XLOC_014939 (ndufs5)


Basic Information

Item Value
gene id XLOC_014939
gene name ndufs5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35357196 ~ 35361556 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029468
TGCATTGCGCTCAGTTACGGCAGCTGAGAGGTCGTGAGTGAACTGTGGGCCTTTGGAAGGTTAAAGTGAACCGGACGAATCATGCCGTTCATTGACCTCCAGTCAAAGTTGGGCATCAATGTGGACAAGTGGCTGCTGGCTCAGAGCGGCGAGCAGCCTCGCAAGCGGGCGGCCTTCTGCCATGCCTTTGAGAAGGAGTGGATCGAGTGTTCCCATGCCATCGGCAAGACCCGGGCCAGTAAGGAGTGCAACATTGAGTGGGAAGACTTCTACGAgtgcatgcaccgctttaagactATGAAGCGCTTGAAAGAGATCAGCACGCAGAAAGAAAAGATGATTAAAGAGGGAACTTACACACCTCCTCCACACCACACAGGCAAAGGGGAGCCGCTGTCCTGAACCCAGACGCCACAGACCCAACATACAGTCACCCTCAACACTGTCATGCTGTTGTACAGTTGATTCCTCACTCATGTATTATAATTCTCTTGCTGTATCAACATTGtttaatatacaataaatcaATTGATTCCATGTCA

Function

symbol description
ndufs5 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFS5 (NADH:ubiquinone oxidoreductase subunit S5).

GO:

id name namespace
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-050522-437 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Orthologous to human NDUFS5 (NADH:ubiquinone oxidoreductase subunit S5).

Ensembl:

ensembl_id ENSDARG00000006290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029468 True 542 mRNA 0.50 3 35357196 35361556

Neighbor

gene id symbol gene type direction distance location
XLOC_014938 macf1a coding downstream 17169 35039902 ~ 35340027 (-)
XLOC_014937 bmp8a coding downstream 321339 35019304 ~ 35035857 (-)
XLOC_014936 si:rp71-45k5.4 coding downstream 346854 35001253 ~ 35010342 (-)
XLOC_014935 zgc:113424 coding downstream 357817 34998029 ~ 34999379 (-)
XLOC_014934 si:rp71-45k5.2 coding downstream 361567 34994433 ~ 34995629 (-)
XLOC_014940 rnf19b coding upstream 18343 35379899 ~ 35400819 (-)
XLOC_014941 ak2 coding upstream 57127 35418683 ~ 35428914 (-)
XLOC_014942 BX957241.1 coding upstream 59279 35420835 ~ 35420951 (-)
XLOC_014943 anln coding upstream 71599 35433155 ~ 35450857 (-)
XLOC_014944 ptp4a2b coding upstream 93616 35455172 ~ 35492784 (-)
XLOC_014711 CR382300.3 misc downstream 15628441 19728690 ~ 19728755 (-)
XLOC_014929 NA non-coding downstream 669644 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 1074188 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 1126911 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 1379202 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1570493 33782783 ~ 33786703 (-)
XLOC_014948 NA non-coding upstream 1348942 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1467395 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 1866354 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2161021 37522577 ~ 37569033 (-)

Expression


Co-expression Network