XLOC_014940 (rnf19b)


Basic Information

Item Value
gene id XLOC_014940
gene name rnf19b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35379899 ~ 35400819 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029469
GAAATGGGATCCGAAAAGGACTCTGAATCCCCCCACTCCTCGGTTAGTGGCATTCCCAATCCCAAATGTCGTGGACCGGGCAAGAAGCAAGGCAGGATCTCTTTTCATAGCCTCTTCCATAGCAAACGTGGGCCTAGGGGGAGCAAGGCTAATGTGGGCACTCCTCTCGCTCAACAGCTGCACCAACAGCAGCAAATCCAGCAGCAGCAGCTTCTGCAGCCCCCCACGCCCACCAATGTGTCTTCAGACCCTTCAACGGCAGATCCCGCCGAGCCACTCTCCACTAGCCAGGCCTCTCTGGGAGGTCAAGAACTTCTAGAATGCCCCCTGTGCCTGGTGCGGCAACCTGCGGAGCAGCTTCCCGAGCTCCAGGGATGCAGCCATCGCTCTTGCCTGTGCTGTCTACGGCAGTATTTGCGGATCGAAATCACAGAGAGCCGAGTGCAGCTCAGCTGCCCAGAGTGCGCTGAGAGACTTGCCCCATGGCAGGTGGCCCTCATCCTGGATGATCCTAACCTGATGGAGAAGTATGAAGAGTTCCTGCTGCGCCGCTGCCTGGCGTCAGACCCTGACTGCCGATGGTGTCCCGCTCCAGACTGTGGTTTCGCAGTCATTGCCTCCGGATGTGCCAGTTGCCCCAGGTTGGTGTGCCGAAGAGAAGGGTGTGGTGCCGAGTTCTGTTACCACTGCAAGCAAGCGTGGCATCCTAACCAGACATGTGACTCTGCCCGCCAACAGAGAGCGCTGTCCTTGAGAACGCACAGTAACCATTCACCCAGCTACACAGCCGAGCAGGGGCACACTGATGACATCAAGCCTTGTCCTCGATGCGGTGCCTACATCATCAAGATGAACGACGGCAGCTGTAACCACATGACCTGTGCTGTGTGCGGCTGTGAGTTCTGCTGGCTCTGTATGAAGGAGATTTCAGACCTGCACTACCTCAGtCCATCAGGTTGTACATTCTGGGGAAAGAAGCCATGGAGTCGCAAGAAGAAGATTCTGTGGCAGCTGGGCACTTTGATTGGTGCACCGGTGGGCATCACTCTTATCGCTGGCATTGCTGTTCCTGCTATGGTTATCGGCATTCCTGTTTACATTGGGCGCAAGATCCACTCGCACTATGAGGGCAAGAAAACCTCTCATCACAGGAGGAATCTGGCCATCACTGGAGGTGTGGCGCTGTCGATCATCACAGCTCCAGTCATCGCTGCTGTCAGTGTGGGCATCGGTGTGCCCATCATGCTGGCGTATGTGTATGGTGTCGTGCCCATCTCTCTGTGCCGCGGCGGGGGCTGTGGGGTCAGCCGGGGCAAAGGAAGAGGAGTTAGAATAGACTTCGATGAGGATGATGGACCTATTAcagTTGCGGACGCGTGGCGAGCTCTGAAGTCCCCCAGTTTGGGCGAGAGCAGTCTGGAGGGAGCAGCCAGTGGCCTCAGCACCACCTCCCCCAGTGAGGGTCTCTCTGTTGCTCCTGGAGGTTTGGGAGACACGCCCCACTTCAACACACTGGCCGGAGGAGCTCTGGGCGCCAGGACTGGAAAATACAGCAGGCTGGAGGTGCAGGGGACGGAGCTGGGAAAGGAAGTTGCTGGCAGGGAGACGGGCAGCTTGGGGGCAGCCAGTGATTGTGCCAGTACGAGAGGCATGGCTGGATCAATCACATCCTCTTACACCTTACCTGACAGAGAGGGCACTAACCTTGAGATCCAGGTGGACATTGAAACCAAACCGAGCCATCTGTGTCTGACCACTGAAGAGGATCTGGCTCCGCCCACTGCTGCCATGGCGCCCGGCGTGGGGGAGGAGCCTCAGGACTGCAGTTCTCGCCGGAGCAGGACGGTCATGGATTCCCCGCTGGGCCTTTCTCCAGGGATGTCACTCAGGGAGGGTCTCCGAGATGTCACCCTTGCTCAGCCCGAAAGCATCCGCAGCGACCTGGAGATGTCTGACACGCAGTCCGACGACATCGCCGAGCTCACGTCCGATGACTGTGACTCGCCTCATCCCAAAAGCTGCCACGGAGCGCCCCCGCAGGCCACCTGCAGAGCCTTGAACCCCACCGACAGCCTGCACTGTCCCGACAATGTCATCCTGTACGTGTGA

Function

symbol description
rnf19b Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF19B (ring finger protein 19B).

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060503-281 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF19B (ring finger protein 19B).

Ensembl:

ensembl_id ENSDARG00000060926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029469 True 2109 mRNA 0.58 9 35379899 35400819

Neighbor

gene id symbol gene type direction distance location
XLOC_014939 ndufs5 coding downstream 18343 35357196 ~ 35361556 (-)
XLOC_014938 macf1a coding downstream 39872 35039902 ~ 35340027 (-)
XLOC_014937 bmp8a coding downstream 344042 35019304 ~ 35035857 (-)
XLOC_014936 si:rp71-45k5.4 coding downstream 369557 35001253 ~ 35010342 (-)
XLOC_014935 zgc:113424 coding downstream 380520 34998029 ~ 34999379 (-)
XLOC_014941 ak2 coding upstream 17864 35418683 ~ 35428914 (-)
XLOC_014942 BX957241.1 coding upstream 20016 35420835 ~ 35420951 (-)
XLOC_014943 anln coding upstream 32336 35433155 ~ 35450857 (-)
XLOC_014944 ptp4a2b coding upstream 54353 35455172 ~ 35492784 (-)
XLOC_014945 col8a2 coding upstream 95463 35496282 ~ 35596207 (-)
XLOC_014711 CR382300.3 misc downstream 15651144 19728690 ~ 19728755 (-)
XLOC_014929 NA non-coding downstream 692347 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 1096891 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 1149614 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 1401905 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1593196 33782783 ~ 33786703 (-)
XLOC_014948 NA non-coding upstream 1309679 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1428132 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 1827091 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2121758 37522577 ~ 37569033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011118 NA coding CM030133.1 CM030133.1 11839260 ~ 11853897 (-)