XLOC_014948


Basic Information

Item Value
gene id XLOC_014948
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36710498 ~ 36731093 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030303
AACACACCTGCTGCCCATCAACAATACAGAACCACACACTTCACCTGCTAGATGATCTCTGCGAGTTCCGGTATTGCATTTGTGCAGAGCTGGAGGCTCACTTGAAGATTTAAATGACAGAAGGCCGCACACTCCCTGCGTGTCAGAGTTCTGCATGTCAGACGGCAGGAGGCATTGAGGGAGATTCGATCCCGAACACTACAAACTGACCACAACAGAAAAGTTGCCCATATGGACATTTGCAGGAtggtgtctgaaatcttctgatgCTGCCAGAACATTATCGGAGGGAAAATCTGATTGCAACGGGCACCAAGCGGCTGTTTGAACATTTTAgcaatcttttaggatttcccaaatttatCTCAATGACAAAATCATGGCTGTTGATATTGAGCTCatagtgtgagcagggctttagtcgaaggaaaatgaatgaattttgataTTGTTGCAAACTTCTTGTTTAGTGCCTGTAATGACCTTTTTGTTGAGTGCTCTATTTAAAGTTAATAGCTTTTTTAGTATGTATTTGTATGAAATCATGACTCACTTGAAAGAAcagagacccactttatattgtgtatCTATCAGGAAGTGAAGAtcaaagatttttaaagaaatcagaccttaaacgtggcCGTTTAATAACCGGAAGTGttgaggctggctggctgaaatttaAAGTCTATGAGCATATACCCTGTTCAGGAAATCCCACTATCAATTCTTTTTATGCTTGTGTAAGTTCAGAGGATGTCAGTATTATCTGCAATTCACCATTTGCCTAGTAATaatcttttattataatttattatatagttTTACTGTTTGCACAtgaatttgttttataattatgcGGCTTGCCCTTACCTTGTGTGTATTTTCTGTGCATATTTAAGATTCCCTGCTTGCTACTCAAATTCAAATCACTTAATATGAATATTCATTTCAGTAATATAGCTGAATTGGAGGGTTTAAATTCCAAAAAAaaggtcatttatttattaaataaatattactaagTTCATATTAAACTGaatcaaaactaaaataaaaattgcaacgTTGGTTACATAAAACTCATAAGAGGGTTATTTTTGTGGCACTTAAGTGATTCATCCTTGACTTCtgcgagagaaaaaaaataagtagTCATATAATGTGATCATTTTTGAGCTGAATGCTGTGTACATGTGCTGACATTTATTCCAAATAGCTTGTTTTGTACCTGTAGCTTTTCCCAATGGTCTTTTCATTGAGCACTCAATTTCAGGTTAATAGCTTCTtcttttttacagtatgtattgGATGACTTTTAATTCTATAATTTcagtgtaaaaaaagaaaacatgattcACTTTTTGGCACAACATCTCCGACGCTTCCCTTAAAATGTTGTCCCATTATCTTTAATTGCAAGCCCACAGCAACTCGGCGGCGGAGAGTTTTAAATGGCTTTCATCTCCTCTGAACAAGCAGAATTAGGAATTTTTACCTTGGACAAGTGCATAAGTGCTGAGTTGAAAGGCTTTAAAAGGAACATAATCGCATGTGTCATTCACAACTCGGCACATCTTGCGAATGGAATTAGCCCCTAGTcacactttcaaaaaaaaaaaaaaaaaagacaatgcaAGGTTACGAACGTCACAGTGCGCATTCTCATACTTGAGCAAGCGTGTTTTTGCTTGGCAGGGGCTTCATTGTGAAACACAGATGACCCGTGAAATTTGATGTAACACACTTCACCTCACCTTCTCACTGATGCGGACCGCGCTACAATTTTCCCCTCAAAGAACAGAGCAAATCAACCTTACCGTTTGCCGGGCACGGGAAGCCCTGTCTGCCCGCTGCTGATGGATTTACATTGTCTGGAAAATTGACACTGCGGGTATAAGATAAGAAGGAAAATTAACATTAATTCCACACTGGAGGTGTGTAGTGTGGATAAACAAAGGCTCAAACTGAGAGATGTCTTGTTAAATCGCTGATTTGTGGATAGATTTGAGGGGCTTCTGACATTGCTCTTGAATCTATGTAATTACTGTTTCCATTCAGCAGTGACGGGAATATTATTGAATCTGATCCTCGTGAGCTCTTAAATGCGCTGTTGAACCAAAATTTGGATATTcctaggcatagctgaataaaATTAATTCAGTACATGGAAAGGCATACTGTGAGggattttgcatcataggtgccgTTTAGCATATT
>TCONS_00030304
AACACACCTGCTGCCCATCAACAATACAGAACCACACACTTCACCTGCTAGATGATCTCTGCGAGTTCCGGTATTGCATTTGTGCAGAGCTGGAGGCTCACTTGAAGATTTAAATGACAGAAGGCCGCACACTCCCTGCGTGTCAGAGTTCTGCATGTCAGACGGCAGGAGGCATTGAGGGAGATTCGATCCCGAACACTACAAACTGACCACAACAGAAAAGTTGCCCATATGGACATTTGCAGGTCTGACAACATGGAGGTTGTGAGTAAACCTTGCTCCATTTGAAGGTGTGTAAAGGCATTTAGCCTAAAGAAGCCAAAGCAACACGTAACATGAAGGAAACCACAGCAGCATCTCTTCGAGATTGCACCGATTGCAGCTTGCACCAATCGAGAGCTGATATGtgcacaattaaaattaatgtattcatttgatGTCAAGCGCTTTAAATATTTCAGACACTGGAGGGCAGGGGAAGACGATCTGAACAGCACTGCAAGGGCGCTGTATTATTGATTGATCGCGCGCTCAGCTCGTCACGGCCGCTGTTCAGGTGTGCATCTGCGCTCCGGGTTATTAGCGTCCCTGCTGCAGATGGAGAGATCAACTGTGTACTTTTGTGTGCACGATGATGAAATTTTTGCTCAGGGAGAAACTCATCCAAAAAGAAAGGCTGAAAGGGCACTTAGTCTGAAAAGATGTTACAGGGATTCCCATTGTGACCCATGGTGTTGTCCTGCTCAGGGCCATGTTGTGAACACTGTGTTttggagatgtttttttttttttaaggaattg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030303 False 2220 lncRNA 0.38 4 36710498 36731093
TCONS_00030304 True 801 lncRNA 0.46 4 36716146 36731093

Neighbor

gene id symbol gene type direction distance location
XLOC_014947 csmd2 coding downstream 35475 36114846 ~ 36675023 (-)
XLOC_014946 trappc3 coding downstream 977097 35722902 ~ 35733401 (-)
XLOC_014945 col8a2 coding downstream 1114291 35496282 ~ 35596207 (-)
XLOC_014944 ptp4a2b coding downstream 1217714 35455172 ~ 35492784 (-)
XLOC_014943 anln coding downstream 1259641 35433155 ~ 35450857 (-)
XLOC_014949 NA coding upstream 97858 36828951 ~ 37120328 (-)
XLOC_014950 cx39.4 coding upstream 422316 37153409 ~ 37154436 (-)
XLOC_014951 BX571837.1 coding upstream 496817 37227910 ~ 37228025 (-)
XLOC_014952 ilf2 coding upstream 770559 37501652 ~ 37508571 (-)
XLOC_014953 NA coding upstream 791484 37522577 ~ 37569033 (-)
XLOC_014711 CR382300.3 misc downstream 16981743 19728690 ~ 19728755 (-)
XLOC_014942 BX957241.1 non-coding downstream 1289547 35420835 ~ 35420951 (-)
XLOC_014929 NA non-coding downstream 2022946 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 2427490 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 2480213 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 2732504 33977878 ~ 33977994 (-)
XLOC_014954 NA non-coding upstream 838531 37569624 ~ 37571866 (-)
XLOC_014955 NA non-coding upstream 846759 37577852 ~ 37578715 (-)

Expression


Co-expression Network