XLOC_014948


Basic Information

Item Value
gene id XLOC_014948
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36710498 ~ 36731093 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030303
AACACACCTGCTGCCCATCAACAATACAGAACCACACACTTCACCTGCTAGATGATCTCTGCGAGTTCCGGTATTGCATTTGTGCAGAGCTGGAGGCTCACTTGAAGATTTAAATGACAGAAGGCCGCACACTCCCTGCGTGTCAGAGTTCTGCATGTCAGACGGCAGGAGGCATTGAGGGAGATTCGATCCCGAACACTACAAACTGACCACAACAGAAAAGTTGCCCATATGGACATTTGCAGGAtggtgtctgaaatcttctgatgCTGCCAGAACATTATCGGAGGGAAAATCTGATTGCAACGGGCACCAAGCGGCTGTTTGAACATTTTAgcaatcttttaggatttcccaaatttatCTCAATGACAAAATCATGGCTGTTGATATTGAGCTCatagtgtgagcagggctttagtcgaaggaaaatgaatgaattttgataTTGTTGCAAACTTCTTGTTTAGTGCCTGTAATGACCTTTTTGTTGAGTGCTCTATTTAAAGTTAATAGCTTTTTTAGTATGTATTTGTATGAAATCATGACTCACTTGAAAGAAcagagacccactttatattgtgtatCTATCAGGAAGTGAAGAtcaaagatttttaaagaaatcagaccttaaacgtggcCGTTTAATAACCGGAAGTGttgaggctggctggctgaaatttaAAGTCTATGAGCATATACCCTGTTCAGGAAATCCCACTATCAATTCTTTTTATGCTTGTGTAAGTTCAGAGGATGTCAGTATTATCTGCAATTCACCATTTGCCTAGTAATaatcttttattataatttattatatagttTTACTGTTTGCACAtgaatttgttttataattatgcGGCTTGCCCTTACCTTGTGTGTATTTTCTGTGCATATTTAAGATTCCCTGCTTGCTACTCAAATTCAAATCACTTAATATGAATATTCATTTCAGTAATATAGCTGAATTGGAGGGTTTAAATTCCAAAAAAaaggtcatttatttattaaataaatattactaagTTCATATTAAACTGaatcaaaactaaaataaaaattgcaacgTTGGTTACATAAAACTCATAAGAGGGTTATTTTTGTGGCACTTAAGTGATTCATCCTTGACTTCtgcgagagaaaaaaaataagtagTCATATAATGTGATCATTTTTGAGCTGAATGCTGTGTACATGTGCTGACATTTATTCCAAATAGCTTGTTTTGTACCTGTAGCTTTTCCCAATGGTCTTTTCATTGAGCACTCAATTTCAGGTTAATAGCTTCTtcttttttacagtatgtattgGATGACTTTTAATTCTATAATTTcagtgtaaaaaaagaaaacatgattcACTTTTTGGCACAACATCTCCGACGCTTCCCTTAAAATGTTGTCCCATTATCTTTAATTGCAAGCCCACAGCAACTCGGCGGCGGAGAGTTTTAAATGGCTTTCATCTCCTCTGAACAAGCAGAATTAGGAATTTTTACCTTGGACAAGTGCATAAGTGCTGAGTTGAAAGGCTTTAAAAGGAACATAATCGCATGTGTCATTCACAACTCGGCACATCTTGCGAATGGAATTAGCCCCTAGTcacactttcaaaaaaaaaaaaaaaaaagacaatgcaAGGTTACGAACGTCACAGTGCGCATTCTCATACTTGAGCAAGCGTGTTTTTGCTTGGCAGGGGCTTCATTGTGAAACACAGATGACCCGTGAAATTTGATGTAACACACTTCACCTCACCTTCTCACTGATGCGGACCGCGCTACAATTTTCCCCTCAAAGAACAGAGCAAATCAACCTTACCGTTTGCCGGGCACGGGAAGCCCTGTCTGCCCGCTGCTGATGGATTTACATTGTCTGGAAAATTGACACTGCGGGTATAAGATAAGAAGGAAAATTAACATTAATTCCACACTGGAGGTGTGTAGTGTGGATAAACAAAGGCTCAAACTGAGAGATGTCTTGTTAAATCGCTGATTTGTGGATAGATTTGAGGGGCTTCTGACATTGCTCTTGAATCTATGTAATTACTGTTTCCATTCAGCAGTGACGGGAATATTATTGAATCTGATCCTCGTGAGCTCTTAAATGCGCTGTTGAACCAAAATTTGGATATTcctaggcatagctgaataaaATTAATTCAGTACATGGAAAGGCATACTGTGAGggattttgcatcataggtgccgTTTAGCATATT
>TCONS_00030304
AACACACCTGCTGCCCATCAACAATACAGAACCACACACTTCACCTGCTAGATGATCTCTGCGAGTTCCGGTATTGCATTTGTGCAGAGCTGGAGGCTCACTTGAAGATTTAAATGACAGAAGGCCGCACACTCCCTGCGTGTCAGAGTTCTGCATGTCAGACGGCAGGAGGCATTGAGGGAGATTCGATCCCGAACACTACAAACTGACCACAACAGAAAAGTTGCCCATATGGACATTTGCAGGTCTGACAACATGGAGGTTGTGAGTAAACCTTGCTCCATTTGAAGGTGTGTAAAGGCATTTAGCCTAAAGAAGCCAAAGCAACACGTAACATGAAGGAAACCACAGCAGCATCTCTTCGAGATTGCACCGATTGCAGCTTGCACCAATCGAGAGCTGATATGtgcacaattaaaattaatgtattcatttgatGTCAAGCGCTTTAAATATTTCAGACACTGGAGGGCAGGGGAAGACGATCTGAACAGCACTGCAAGGGCGCTGTATTATTGATTGATCGCGCGCTCAGCTCGTCACGGCCGCTGTTCAGGTGTGCATCTGCGCTCCGGGTTATTAGCGTCCCTGCTGCAGATGGAGAGATCAACTGTGTACTTTTGTGTGCACGATGATGAAATTTTTGCTCAGGGAGAAACTCATCCAAAAAGAAAGGCTGAAAGGGCACTTAGTCTGAAAAGATGTTACAGGGATTCCCATTGTGACCCATGGTGTTGTCCTGCTCAGGGCCATGTTGTGAACACTGTGTTttggagatgtttttttttttttaaggaattg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030303 False 2220 lncRNA 0.38 4 36710498 36731093
TCONS_00030304 True 801 lncRNA 0.46 4 36716146 36731093
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_014947 csmd2 coding downstream 35475 36114846 ~ 36675023 (-)
XLOC_014946 trappc3 coding downstream 977097 35722902 ~ 35733401 (-)
XLOC_014945 col8a2 coding downstream 1114291 35496282 ~ 35596207 (-)
XLOC_014944 ptp4a2b coding downstream 1217714 35455172 ~ 35492784 (-)
XLOC_014943 anln coding downstream 1259641 35433155 ~ 35450857 (-)
XLOC_014949 NA coding upstream 97858 36828951 ~ 37120328 (-)
XLOC_014950 cx39.4 coding upstream 422316 37153409 ~ 37154436 (-)
XLOC_014951 BX571837.1 coding upstream 496817 37227910 ~ 37228025 (-)
XLOC_014952 ilf2 coding upstream 770559 37501652 ~ 37508571 (-)
XLOC_014953 NA coding upstream 791484 37522577 ~ 37569033 (-)
XLOC_014711 CR382300.3 misc downstream 16981743 19728690 ~ 19728755 (-)
XLOC_014942 BX957241.1 non-coding downstream 1289547 35420835 ~ 35420951 (-)
XLOC_014929 NA non-coding downstream 2022946 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 2427490 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 2480213 34188192 ~ 34230285 (-)
XLOC_014924 CU928445.1 non-coding downstream 2732504 33977878 ~ 33977994 (-)
XLOC_014954 NA non-coding upstream 838531 37569624 ~ 37571866 (-)
XLOC_014955 NA non-coding upstream 846759 37577852 ~ 37578715 (-)

Expression

Expression of XLOC_014948 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network