XLOC_014949


Basic Information

Item Value
gene id XLOC_014949
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36828951 ~ 37120328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030305
cagacaaACTACTCACCACTTAAAGATGACCTTTCTGCACTCCAAAGGGGAATCCTGTTTGCCCTTCACACCCAGAAGCACATTATCATCGCTTTTATGACATTTGTAATGGACATGTAGATCACTGTCCAACACAATTACACCAGGATAGCCTTTATAGACACCGGGCATCCAGGAATATGCAGCTCGGAAAGAGCCAGTGTACAGAAAGT
>TCONS_00030306
gttcttcacaagactcaaaccctgtcgtcgcAGTTAACTCCTCTCTGCCTCTCAAGTCCCCTGACGTACGGAGCgaaccactggacaaactggtatcaGCGGTAATGCCGTCCACAGGGAGacaaACTACTCACCACTTAAAGATGACCTTTCTGCACTCCAAAGGGGAATCCTGTTTGCCCTTCACACCCAGAAGCACATTATCATCGCTTTTATGACATTTGTAATGGACATGTAGATCACTGTCCAACACAATTACACCAGGATAGCCTTTATAGACACCGGGCATCCAGGAATATGCAGCTCGGGTGAGTTATGCTTTTCACAGCAGAACTAATCACATTACAAACACAAGCCACGATAAGAGAACATCAGTATGGAAATAAGCAGAACACAGTCTGATGCTTCATGCACAAAGAGCCCATGCAGGTATTGTACATCCAAGCACATCTGGTCTTCCGTGCGCCTGAGAGCCTCCATCATGTTTCATTCATAGCCTGAAGAGAAACCCTTACATCACAGAAATAATGCAGGAGGAGAGGGTTATTTAGAAAGAGACCAGATAAGAACGAGAAATGTAAAGCGATACATGGG
>TCONS_00030307
CACGTTTTGTTGTAGTTACCATGTTTATAAAGGAGGATAGATATAATATGTAAGCTAACACTCAGGACCCGCTGACTGTTGATGCCCCTCCTGAGGTTTGGGGCCACAGATGAGCGGAGCGTGTCTTTTAAAGCCTGAAAAGACTGCTTACCATGTGGATTGATTAGTTGAGACAGAAGCCCGTGGTCTGGATCCTGAGGTGCCTTCTTCATGGCTGGAAGGACCGAAGGGgagtgattatgacgtagtgccaGTTGTTTGTATCCTgtggggaaatcctcttgccgacaccggacaacagttcatcaaactgggcctggtgcagtcagaagcaccgttgaaCGCCTTTATCATCCATCACCCAGacaaACTACTCACCACTTAAAGATGACCTTTCTGCACTCCAAAGGGGAATCCTGTTTGCCCTTCACACCCAGAAGCACATTATCATCGCTTTTATGACATTTGTAATGGACATGTAGATCACTGTCCAACACAATTACACCAGGATAGCCTTTATAGACACCGGGCATCCAGGAATATGCAGCTCGGGTGAGTTATGCTTTTCACAGCAGAACTAATCACATTACAAACACAAGCCACGATAAGAGAACATCAGTATGGAAATAAGCAGAACACAGTCTGATGCTTCATGCACAAAGAGCCCATGCAGGTATTGTACATCCAAGCACATCTGGTCTTCCGTGCGCCTGAGAGCCTCCATCATGTTTCATTCATAGCCTGAAGAGAAACCCTTACATCACAGAAATAATGCAGGAGGAGAGGGTTATTTAGAAAGAGACCAGATAAGAACGAGAAATGTAAAGCGATACATGGG
>TCONS_00030308
atggagtTGGAGATGAAGTTGGACAAGAAAACAACTTACTATGGTTCCAGCAAGATTAAAAGTGAATAAAGATTATAGAAGCTAACACTCAGGACCCGCTGACTGTTGATGCCCCTCCTGAGGTTTGGGGCCACAGATGAGCGGAGCGTGTCTTTTAAAGCCTGAAAAGACTGCTTACCATGTGGATTGATTAGTTGAGACAGAAGCCCGTGGTCTGGATCCTGAGGTGCCTTCTTCATGGCTGGAAGGACCGAAGGGTTCAGTGGTGGATGGAGCAGCTCTaaccataatagaagaagctgtggattgtgagttCCAACCTTGATGTGATTCTCCTTTAGTTTAAACCCccagagagaaagacagacagg
>TCONS_00030309
aagaaatggagtTGGAGATGAAGTTGGACAAGAAAACAACTTACTATGGTTCCAGCAAGATTAAAAGTGAATAAAGATTATAGAAGCTAACACTCAGGACCCGCTGACTGTTGATGCCCCTCCTGAGGTTTGGGGCCACAGATGAGCGGAGCGTGTCTTTTAAAGCCTGAAAAGACTGCTTACCATGTGGATTGATTAGTTGAGACAGAAGCCCGTGGTCTGGATCCTGAGGTGCCTTCTTCATGGCTGGAAGGACCGAAGGGatttttcatacaATAACCTATGCTGCAGTGCGGGAATCACTGACCGTTTGCTATATagggagcagcagagactattttgtatgggactttgtctgtaacttttacagttcatatggaccagtttattcttcctccag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030305 False 212 lncRNA 0.44 2 36828951 36862051
TCONS_00030306 False 594 lncRNA 0.46 2 36861576 36938485
TCONS_00030307 False 838 lncRNA 0.46 4 36861576 37120328
TCONS_00030308 False 371 lncRNA 0.46 4 36886296 37099270
TCONS_00030309 True 400 lncRNA 0.45 3 36987484 37099275

Neighbor

gene id symbol gene type direction distance location
XLOC_014948 NA coding downstream 97858 36710498 ~ 36731093 (-)
XLOC_014947 csmd2 coding downstream 153928 36114846 ~ 36675023 (-)
XLOC_014946 trappc3 coding downstream 1095550 35722902 ~ 35733401 (-)
XLOC_014945 col8a2 coding downstream 1232744 35496282 ~ 35596207 (-)
XLOC_014944 ptp4a2b coding downstream 1336167 35455172 ~ 35492784 (-)
XLOC_014950 cx39.4 coding upstream 33081 37153409 ~ 37154436 (-)
XLOC_014951 BX571837.1 coding upstream 107582 37227910 ~ 37228025 (-)
XLOC_014952 ilf2 coding upstream 381324 37501652 ~ 37508571 (-)
XLOC_014953 NA coding upstream 402249 37522577 ~ 37569033 (-)
XLOC_014954 NA coding upstream 449296 37569624 ~ 37571866 (-)
XLOC_014711 CR382300.3 misc downstream 17100196 19728690 ~ 19728755 (-)
XLOC_014942 BX957241.1 non-coding downstream 1408000 35420835 ~ 35420951 (-)
XLOC_014929 NA non-coding downstream 2141399 34660712 ~ 34687552 (-)
XLOC_014928 NA non-coding downstream 2545943 34281886 ~ 34283008 (-)
XLOC_014927 NA non-coding downstream 2598666 34188192 ~ 34230285 (-)
XLOC_014955 NA non-coding upstream 457524 37577852 ~ 37578715 (-)
XLOC_014956 CR735126.1 non-coding upstream 517046 37637374 ~ 37637493 (-)

Expression


Co-expression Network