XLOC_014963 (col16a1)


Basic Information

Item Value
gene id XLOC_014963
gene name col16a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38473758 ~ 38611814 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029498
GTGAACCATGTCAAGTGATCTCTTCAGAATCTGGAAACACCTTGGGCTCGCAGAGCAAACAGGGGGCTAAAGGGGAACCGGGTGTTCCAGGCAAATCAGAACAGGGTCCACCTGGCCTTCCAGGAGTGGATGGCAGAACAGGAGAGAAGGGGGAGGCAGGGGTCGATGGAGCCAAAGGTGAAAAGGGTGAACCATGTTCCGGCTGTCCATCCAATGGACTAAATCCAGCAGGCATTTTGAAGCAGACTCAAAAGGGAGAGAAGGGAGATCCTGGTGTTGGGCAGAAAGGAGAGCAGGGAGAACCAGGACAGATTGGCTTTGGTGGACTTAAAGGAGAAAAGGGCAATGCTGCGTCAGCCAGTCTGATGCTTTTACACTTTGCACTTTATCCTCTCATTGTCACTCCCtcggtctgtatgtgtgtgtgtgagtgtgcgcaaGGATGGAGAGAATGAATCTCAATCTGTATTAGGAGGATAGCTGAAAAGTTTTACGCAGAGCCATTTACAATTGTCAAATTATGCAGCTTTCATGAACG
>TCONS_00029499
gtgtcaTTTGCCCGTCCATACAGGTAGAAGACTGGAAGTTTCCTCAAACTGCCAGACACAACATTACAGGTTTCAATCTGGCACGCCGATTCTCTCTGCTGATGAACAGTGAGGTCAAGAAAATCCGAAACCCAAGAGGTCCTGTCATCCTCCGCCTAGGCAAAGTCCAACTCATCCAACCCACAAATCAAGTGTTTCCTCATGGACTTCCAGAGGAGTTCACCCTGGTCTTCACCCTGCTGCTAAAGAAGAAATCATTGAATGAGAGCATTTACCTGTTCCAGATATCTGATGAGCACGGATATCCTCAGTTCTCACTGGACTGGAATGGTCCAGATGGCAACCTGGCCCTGCGGGCGAGAGGAGCCGACCCTGAAGGGCCCATGGTGGGCTGTGTGTTCGACGGAGATGGTGTGGAATCCCTGATGGACAAGCGCTGGCATAAGGTTGCTCTGAGTCTGCAGAGAGAGTCTGCCTCTTTGCACGTGGACTGCAGCTCCATTGAGAACAAGCCTCTGGAGCTCCGCGGCCAGTTGCCCATCAGTGGACACACACTGTTGGGGATGAGGGCTACTGATGCTGCCCCTGTGGAGATTGACATCCAGCAAGTGATGGTGTATTGTGACCCCTCTCTGGCAATCCAGGAAGCCTGCTGTGAGATTCCTGGAGCTCGGTGCCCGCCTGATGCTCCAAAGAGTCGCCGAGCTGCAGAGAACCAGGTGGAGTTTGTGCCCAACCCCTTCAGTCAGGCAATCCTCGGATCCAAAGAACTGGCGGAAAAATGTGCAGGCTGTGTACTGCTCAGTGAGGAATCGAGTGTTATCCAGGAGGGTCAGTCTGGACTCAAGGGAGAAAAAGGAGATCGGGGTTTGGACTGCACAGGTGCTGGAGTTCCTGGACGATGCTTGGAAGGTGCTAAAGGGGAGAAAGGAGAGAAGGGAGAGTCGGGTCTGGCTGCCAACTGGGGGGAAGCTGTAGGAGTGAAGGGGGTAAAAGGGCAGAAGGGAGAAGTCGGAGCCCCAGGTCTGGCTGGTAGTCCGGGAAGAGATGGTCGAGCTAATCCTATTTGTGTGGTGGGCCCTAAAGGACAAAAGGGCGCTCCTGGTGTGGTCGGTCCAGAGGGGCTCGCAGGAGAACCAGGCCAGCCAGGATTTCCAGGACTACCTGGTGTTGGGAAACCGGGACTACCTGGGCCCCCTGGTGGATCTTCAGGTTCTAAAGGAGAGAAAGGGGATTCTGGGACACCTGGAGAAGACGGAAAGCCTGGAGAACCCGGTCCGAGAGGCCCTTGGGGACCTAAAGGCGAGAAGggagAACCGTGTGAACCATGTCAAGTGATCTCTTCAGAATCTGGAAACACCTTGGGCTCGCAGAGCAAACAGGGGGCTAAAGGGGAACCGGGTGTTCCAGGCAAATCAGAACAGGGTCCACCTGGCCTTCCAGGAGTGGATGGCAGAACAGGAGAGAAGGGGGAGGCAGGGGTCGATGGAGCCAAAGGTGAAAAGGGTGAACCATGTTCCGGCTGTCCATCCAATGGACTAAATCCAGCAGGCATTTTGAAGCAGACTCAAAAGGGAGAGAAGGGAGATCCTGGTGTTGGGCAGAAAGGAGAGCAGGGAGAACCAGGACAGATTGGCTTTGGTGGACTTAAAGGAGAAAAGGGCAATGCTGGCAGCAGAGGAAATGAGGGTAAAACTGGCAAACCTGGTCCAAGAGGGCCAAGTGGGAAAGATGGAAATAAAGGAGCCAAGGGTGACACTGGCCTACCTGGTATAGGGACACCTGGTCTAAAAGGTGAAAAGGGGGACTCGTGTGGGGCATGCCAGTCCTCTCCCTCTGAAGTGGGAAGTGGCCCACCTACAATAAAATTGACAGGAGAACGTGGACCTCCAGGACCCGCAGGCCCACCAGGAGAAGGAGCTGAGGGCAAACAGGGGCCACCAGGTCTTCAAGGATTCAAAGGAGAGAAAGGTGATCAGGGTTTACAAGGAGACTCAGGTACACCTGGTACACCTGGAGTCGCAGGACCTCAAGGAGAGCCAGGCAGGAACGGTCTTAATGGACTAAAAGGAGAAAAGGGAGATGCTTGCGACAGCTGTCCGTCACTCCCTGAAGGAAATGGAGATGTTGTTGGCTTACCGGGACCTAAGGGAGAGAGAGGAGAGCCGGGTTTGCCAGGCGAGGGCCGAGAAGGGAAACAGGGTCGACCAGGCCCACCTGGTGTTCAGGGACCTCCAGGACTCAAAGGAAGTCAGggGGATTCTGGGCCTGCAGGTATTGGCCTTCCAGGACCACAGGGCGAGCAGGGACCTAGAGGCTTTCCTGGAGCTGCTGGTCCAGAAGGACGTTCAGGACTCATAGGGCCAATGGGACCATCAGGACTAAGGGGTCCAAAGGGAGAGATAGGACCACCGGGGCCACAGGGGCCAATGGTAACAGGACCAGTCGGACCACCGGGTCGGGATGGTACAGCCGGATTCCCTGGAATACCAGGACAAGATGGGGCTCCCGGAGTCAAGGGGCCCAAGGGTGACAAGGGTGAACCAGGAGAGTGCAACTGTTTGCATAATATGTTTCCTGGAACTGGCGGACCTggagTCCCAGGTGGTGAAAACAGGGTACAGCCAGGTCCTCAGGGGCCTCCTGGACCACCGGGCCCTCCAGGTCCTCCAGGCCCCCAGGGCTTTACTGGAATCCCAGGCCCACAGGGTATCCCTGGCAACGATGGCTTACCAGGGAAAGCGGGTCCACCGGGCCAAGCAAATCTCCTTCCTCAGGATTCAGCTTCTCCAGGAAAGGAAGGCTGTGGCGATTGTTCCAAGGGTCTACCAGGTGTGCCTGGCACGGTTGGTGCAAAGGGCGAGAAGGGAGATCAGGGCAAACCTGGCGTTGTGCCCTTGGAAGGATGCGAACGGTGTTTTGAGCTGCAGAGAGAGGAAACACCAAGCGGACCTACGGGTAACAGCGGTCCGTGTGTTGGCACACCGGGGGCACCTGGATTCCCAGGACAACCAGGAGTTAAAGGAGAGCCAGGTCCTAGAGGGGAGAGAGGACCTCCTGGTACTCCTGGAAACCCGGGCAATATTGGTTTCCCTGGTCCTCAAGGGCCTCCAGGCTTGTCCGGTCAGCAAGGTCAAAGAGGGACAGATGGGAATCCAGGACTGAAGGGCGAACAGGGTCCACCAGGAAGTCCTGGCTATCCTGGAACTATGGGACCACCCGGTCTCCCTggACTTAAAGGAGAGCGAGGCAGTCCAGGCACTGTGGGGCTGAAAGGAGAATCAGGCCCACCGGGATCTCCAGGTTATCAAGGACCAGTCGGTCCGGCAGGTCCTAAAGGGGAAGCTGGAGCATCGGGACCTGGGGGAGCAAAGGGAGATCAGGGCTTTCAAGGATCTCCGGGATTTCCAGGACAACAGGGTCCTCCAGGTTTCCCAGGGAAAGCAGGACCtccaggccctccaggaccacaGGCTGAGAAGGGTGTTGCTGGAGTTGCAGGCCCACAGGGGCCCACAGGTCCTCCAGGATCACCAGGGTCCCCAGGCATGCCTGGACCACCTGGAATGGAAGGACTTGATGGCAAAGATGGAAAACCAGGTTTAAGGGGTGAACCAGGACCAGCTGGCCAGCCTGGACTCAGGGGAATCCCGGGTTTCAAGGGCATCAAAGGACACACGGGTCTCCCTGGAATGAAAGGAGAAAGAGGACCACAGGGACCAGCCGGAGCCTCAGGAAGGCCTGGTCTTGAGGGTGATCTTGGTCCCCCTGGACCTCAGGGACCACCTGGAGCTCCAGGACATTTGGGTGCTGTCGGACCCGTAGGGCCACCGGGACCAGTTGGGCCACCTGGAGCTGGCACTAAGGGAGACAAAGGTGAGCCAGGAGAGAGAGGACAGGGTGGATTacctggccctccaggacttcCAGGTCACCCAGGACTGATGGGTGAACCAGGAAGTGACGGATCTGCAGGTAAAGATGGAGCCCCGGGCCTGCCAGGAGAGCCTGGTCCACAGGGAGTAAAGGGTGATGCAGGGGCTGAGGGGCAGAGGGGGCCCCCGGGAGAGCGTGGACGTCCCGGACCACCAGGAGGAGGCTTAGGTTTTGGCTCCAAAGGACCAGAAGGGATCATAGGGCCAGCCGGGCCCCGTGGTGAGAGGGGAAGCCCTGGTTCACCCGGACAAGCTGGTGCCCCTGGATTACCAGGAATACCAGGGAAtgatGCTGTTGTGAACTATGATGAGCTAAGATCCTTCATCAGACAGCAGGTCATAAAGATATTTGACGAGCGCATGGGTTACTACATGTCACGAATGCAGATGCCTGTGGAGATGGTTGCATCCCCCGGACGACCGGGACCCCCGGGTAAAGATGGAAATCCAGGCCTTCCAGGTCCTGCAGGGATGCCAGGCCGTCCTGGGCAGATTGGGCGTGAAGGAAGGCAGGGACCCATGGGTCCGCCCGGTGGTCCTGGAGTGAAGGGAGAGAAAGGAGATAAGGGTGTTGGAGAAATGGGAGACAGTggtcctcctggtgctccagGTCTCCCTGGTCCTCCTGGTTATGGAAAGATGGGACCACCAGGTCCTTCTGGTCAACAGGGAGTCCCTGGCATTCCTGGACCTCCAGGACCATCAGGACAGAAGGGCAAGGATGGCCGCTGTCATCCATCGGACTGTATGAGTATGCCTATGGAATACAATCCCAAGGGTCCACCTCCCAAAGGTCCCATGTACTAAAAGAGATTTTAAGAGAAGTAAAAGCTGGAGGATGGTACCCAAATATTAACATTCACACAATTACCTACCTGCACCTGCTCTAAGGCTCCACGGAGAACCAAAGGATTGATGTGCATTTCCGTTCCGCAAAGCCAAAACACTGGTTCTCCACCAATGGGGAATTTAATATAGTCTGGCATTAACACCACTACAATAAGTGCCACATTCCAAACCTGAGTGCCTTAACCTCTGAGTAATGCTACACTTGCAGTAGAGATGGTGCTTTTACTGTTGCAGTAAATTGAAGACCTCTAGATTCCTGGACATATAAGGCTTTGACAGTTGTTATTAATTTCCAGATTTATTCAGAATTCAGCATTTTTAATTTCTTACTAACCCCCCACAGGATATTAGTTTCTCAATGTCACATCAAGGCCATTTGTTATCTATTAAAGCAATATCCTTGAGTTAAATGCAAGTTAAAATCATCTACAGCATGCCGTTTGTTAAAGCAGGAATTATTTTGGCATAAATTATAGTGGAACTCCATGGGCTAAGTGTATAcggatttttctttttaatttagtatAAAATTAGGTACGAGTGAAAATGATTTTCCACTGAGATTGACTTCATGCCAGTGATGCTGTTGGTAGTGCTTGTATTAAATCCAAAATATTCGTTTAACTATA
>TCONS_00029500
ctttctccagaagataaaaatattttcagatgtactgtgaaaatgtacttgctttgtcaaacatcatttgggaaatatttaaaaaagaaaaaatattaaagggggctaataattctcagaaagaagagtgtttcccagtgatgggttgcagctggaagggcatctgctgtgtaaaacacatgctggataagttggcggttcattccgctgtagcaacccctgattaataaagggactatactgaaaagcaaatgaatataatatataatcctGATTTGCTGTGATGTTCCACAATCTGAAACATTTTTATGGCTTTTAATTCCATTTTCTtcctctatgttaagctgctttggcacattctacattgtaaaaataaaaaaataaagatgaatttaattaaactgaatttaaTAATAGCTGTATAAATTGTTATTACTGTATCTTTAAATAATCAAACATTTCTTTCTGTTTCTCTCTGCGTTTTATTCTCACAATCAAACAGGGTGAACCAGGACCAGCTGGCCAGCCTGGACTCAGGGGAATCCCGGGTTTCAAGGGCATCAAAGGACACACGGGTCTCCCTGGAATGAAAGGAGAAAGAGGACCACAGGGACCAGCCGGAGCCTCAGGAAGGCCTGGTCTTGAGGGTGATCTTGGTCCCCCTGGACCTCAGGGACCACCTGGAGCTCCAGGACATTTGGGTGCTGTCGGACCCGTAGGGCCACCGGGACCAGTTGGGCCACCTGGAGCTG
>TCONS_00029501
GGAGAGTGCAACTGTTTGCATAATATGTTTCCTGGAACTGGCGGACCTggagTCCCAGGTGGTGAAAACAGGGTACAGCCAGGTCCTCAGGGGCCTCCTGGACCACCGGGCCCTCCAGGTCCTCCAGGCCCCCAGGGCTTTACTGGAATCCCAGGCCCACAGAATCTCCTTCCTCAGGATTCAGCTTCTCCAGGAAAGGAAGGCTGTGGCGATTGTTCCAAGGGTCTACCAGGTGTGCCTGGCACGGTTGGTGCAAAGGGCGAGAAGGGAGATCAGGGCAAACCTGGCGTTGTGCCCTTGGAAGGATGCGAAC

Function

symbol description
col16a1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Is expressed in dermis. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-351 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be active in extracellular matrix and extracellular space. Is expressed in dermis. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain).

Ensembl:

ensembl_id ENSDARG00000009194

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029498 False 538 mRNA 0.50 7 38473758 38539670
TCONS_00029499 False 5413 mRNA 0.55 69 38474567 38611814
TCONS_00029500 False 752 lncRNA 0.42 5 38482489 38487275
TCONS_00029501 True 313 mRNA 0.59 5 38508289 38517343

Neighbor

gene id symbol gene type direction distance location
XLOC_014962 BX276085.2 coding downstream 9345 38464295 ~ 38464413 (-)
XLOC_014961 BX276085.1 coding downstream 9509 38464127 ~ 38464249 (-)
XLOC_014960 smap2 coding downstream 54183 38387255 ~ 38419575 (-)
XLOC_014959 NA coding downstream 100760 38323275 ~ 38372998 (-)
XLOC_014958 BX530058.1 coding downstream 411634 38062000 ~ 38062124 (-)
XLOC_014964 NA coding upstream 69085 38680899 ~ 38688614 (-)
XLOC_014965 adgrb2 coding upstream 154799 38766613 ~ 38872650 (-)
XLOC_014966 CABZ01048582.1 coding upstream 591804 39203618 ~ 39203735 (-)
XLOC_014967 CT583726.2 coding upstream 815366 39427180 ~ 39579002 (-)
XLOC_014968 CT583726.1 coding upstream 976782 39588596 ~ 39589155 (-)
XLOC_014711 CR382300.3 misc downstream 18745003 19728690 ~ 19728755 (-)
XLOC_014957 BX571820.1 non-coding downstream 445140 38028498 ~ 38028618 (-)
XLOC_014969 NA non-coding upstream 983615 39595429 ~ 39602691 (-)

Expression


Co-expression Network