XLOC_014965 (adgrb2)


Basic Information

Item Value
gene id XLOC_014965
gene name adgrb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38766613 ~ 38872650 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029502
AGAGGCTGGCGAAGAAAACTGGGACGCAGAGAGCTGCCAAACGCTCCCATCGCCGGCAGTCTCCCACACCAAATGTCTGTGCAGCAAGCTGTCCACCTTTGCAGTGTTAGCGCAGAAAGCTAAAGAACCGGGTATGGGGCCCTCCAGTATGCCGTCTGTACCCCTGATGGTGGGCTGTGGCATATCGTGTACGGCCCTGCTCATTCTGCTGCTCATCTACGCTGCCTTCTGGAGGTACATTCGTTCAGAGAGGTCCATCATCTTGGTGAACTTCTGTCTGTCCATACTGGCCTCCAATGTGCTTATACTGGTGGGACAGTCCCAAACGCTCAGTAAGGGACTGTGCACTGTGACTGCTGCCTTTTTACACTTCTTCTTTCTGGCCTCTTTCTGCTGGGTTTTGACGGAGGCCTGGCAGTCCTACCTGGCCGTGATTGGCAAGATGAGATCTCGCCTCATTCGAAAGCGTTTCCTGTGCCTCGGCTGGGCCTTAGTAGTAGCTGTATCTGTGGGTTTCACACGGGCTAGAGGTTACGGCACGCCAAGTTATTGCTGGTTGTCTCTGGAAGGGGGGCTGCTTTATGCGTTCGTCGGTCCTGCTGCTGTCATTGTCCTGGTAAACATGCTGATAGGAATCGTGGTCTTCAACAAGCTCATGTCTAGAGACGGCATCTCAGACAAGTCCAAAAAGCAGAGAGCAGGGCTGCTCCTGAAATGCTCCAAGTGTGGGGTGATCTCCAGTACTGCCCTGTCCAGCTCTACCGCCAGCAGCGCCATGGCATCTTTATGGAGCTCTTGTGTGGTTCTCCCTCTGCTGGCCCTCACATGGATGTCAGCTGTTCTGGCCATCACAGATCGCCGCTCGACCCTCTTTCAGGTGCTCTTCGCGGTCTTTGACTCCGTCCAGGGATTCGTCATCATCACTGTGCATTGTGCCATGCGGAGAGAGGTGCAGGACGCAGTGCGCTGCAGGATGGGTGGCTGCAAAGACGACAGTGAAAACTCTCCGGATTCCTGCAAGAACGGCCAGACGGACTTTGAGAAAGATGTGGACCTGGCATGCCAAACAGTCATCTTTAAGGAGGTGAACACCTGTAACCCTGCCACCATAACCGGAACCCTATCTCGCATCTCCCTGGATGACGAGGATGATCCCAAGTTGGCAGCTCATCAGGAAGGCGTTAATTTCAGCAGTTTGCCTGGAAACATCCCACCCCCTAACCTCCTGGTACAGGTACCTCCGTTGGGTCCCCTAAACGAGCTCAGCGAGCAGCCACTGAAGAAAGAGGTCAATGTGGAGCAACAAGGTCAGCATCAGCGATCTGGACCCATCTATCTGTGCACAGAGAGTGGGTTGGGTTGGGCCCGACCTAATCCTTCTTCCACCCAGGATTCAACTGGTGGAGGAGGTGGGGAAGGGGATTACATGGTGTTGCCACGTCGAACAGTCAGTCTAAAGCCCCCTCCTCCACCCCAGGATGAGGGGAAACCCCTAAACATTACAGTAGATGACCCCCCTTTTCCCCCACCCCCTTCACCAATGACTCTGCATCCAGCCGAGAGTGAAGCATACCCTGCAGACTTTGCAGCTACAGACCACATCAGCATGAACTTAAACCGCTCCTACAGCACGCTCAAACAGTTACCGGCCCATGCCggacacacacactcccacaccAACACCCACACTCTGCAGGTCAAGCAGAATCGTCCTTCTGTCCGGCAGATCCTCACCTCGGGAACGGTGGAGCGCACCAGAACCCTTCCCCGCAACCTGGGCAGCACCAACACCAGCATCTCGGCTGGATCTTTGGAAAGGAAAAGAGTACGGTACTCTGAGCTGGACTTTGAGAAAGTGATGCACACTCGCAAAAGACACTCAGAGCTGTACCATGAACTCAACC
>TCONS_00029503
ATGGGGCCCTCCAGTATGCCGTCTGTACCCCTGATGGTGGGCTGTGGCATATCGTGTACGGCCCTGCTCATTCTGCTGCTCATCTACGCTGCCTTCTGGAGGTACATTCGTTCAGAGAGGTCCATCATCTTGGTGAACTTCTGTCTGTCCATACTGGCCTCCAATGTGCTTATACTGGTGGGACAGTCCCAAACGCTCAGTAAGGGACTGTGCACTGTGACTGCTGCCTTTTTACACTTCTTCTTTCTGGCCTCTTTCTGCTGGGTTTTGACGGAGGCCTGGCAGTCCTACCTGGCCGTGATTGGCAAGATGAGATCTCGCCTCATTCGAAAGCGTTTCCTGTGCCTCGGCTGGGGTCTTCCAGCCTTAGTAGTAGCTGTATCTGTGGGTTTCACACGGGCTAGAGGTTACGGCACGCCAAGTTATTGCTGGTTGTCTCTGGAAGGGGGGCTGCTTTATGCGTTCGTCGGTCCTGCTGCTGTCATTGTCCTGGTAAACATGCTGATAGGAATCGTGGTCTTCAACAAGCTCATGTCTAGAGACGGCATCTCAGACAAGTCCAAAAAGCAGAGAGCAGGGGCATCTTTATGGAGCTCTTGTGTGGTTCTCCCTCTGCTGGCCCTCACATGGATGTCAGCTGTTCTGGCCATCACAGATCGCCGCTCGACCCTCTTTCAGGTGCTCTTCGCGGTCTTTGACTCCGTCCAGGGATTCGTCATCATCACTGTGCATTGTGCCATGCGGAGAGAGGTGCAGGACGCAGTGCGCTGCAGGATGGGTGGCTGCAAAGACGACAGTGAAAACTCTCCGGATTCCTGCAAGAACGGCCAGGTGCAGATCATGGTGAATAGCATTCCATTCCATCTCATCTCACGGGGGACACTAAAGGGGATTTTTCACTGA
>TCONS_00029504
atgcttagaaatgtgttgaaaaaaatcttctttccattatacagaaattggggaaaaaaatatatacagggggctaataattctgtatttaACTATGAGGAGTTCTCATTactgtttttcttcttttctgtGCAGGGTATGGGGCCCTCCAGTATGCCGTCTGTACCCCTGATGGTGGGCTGTGGCATATCGTGTACGGCCCTGCTCATTCTGCTGCTCATCTACGCTGCCTTCTGGAGGTACATTCGTTCAGAGAGGTCCATCATCTTGGTGAACTTCTGTCTGTCCATACTGGCCTCCAATGTGCTTATACTGGTGGGACAGTCCCAAACGCTCAGTAAGGGACTGTGCACTGTGACTGCTGCCTTTTTACACTTCTTCTTTCTGGCCTCTTTCTGCTGGGTTTTGACGGAGGCCTGGCAGTCCTACCTGGCCGTGATTGGCAAGATGAGATCTCGCCTCATTCGAAAGCGTTTCCTGTGCCTCGGCTGGGGTCTTCCAGCCTTAGTAGTAGCTGTATCTGTGGGTTTCACACGGGCTAGAGGTTACGGCACGCCAAGTTATTGCTGGTTGTCTCTGGAAGGGGGGCTGCTTTATGCGTTCGTCGGTCCTGCTGCTGTCATTGTCCTGGTAAACATGCTGATAGGAATCGTGGTCTTCAACAAGCTCATGTCTAGAGACGGCATCTCAGACAAGTCCAAAAAGCAGAGAGCAGGTCCACCGCTGGAAGCGCGTAGCAGGCTGCTCCTGAAATGCTCCAAGTGTGGGGTGATCTCCAGTACTGCCCTGTCCAGCTCTACCGCCAGCAGCGCCATGGCATCTTTATGGAGCTCTTGTGTGGTTCTCCCTCTGCTGGCCCTCACATGGATGTCAGCTGTTCTGGCCATCACAGATCGCCGCTCGACCCTCTTTCAGGTGCTCTTCGCGGTCTTTGACTCCGTCCAGGGATTCGTCATCATCACTGTGCATTGTGCCATGCGGAGAGAGGTCAGTGTGTTATACAGTATACTTGTGAAGCAACTAGTATATGTCTCACTATAA

Function

symbol description
adgrb2 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and peripheral nervous system development. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; cell surface receptor signaling pathway; and negative regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; heart; and pleuroperitoneal region. Orthologous to human ADGRB2 (adhesion G protein-coupled receptor B2).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-060503-573 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and peripheral nervous system development. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; cell surface receptor signaling pathway; and negative regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; heart; and pleuroperitoneal region. Orthologous to human ADGRB2 (adhesion G protein-coupled receptor B2).

Ensembl:

ensembl_id ENSDARG00000025667

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029502 False 1904 mRNA 0.55 14 38766613 38872650
TCONS_00029503 False 903 mRNA 0.54 8 38783225 38830582
TCONS_00029504 True 1041 mRNA 0.50 8 38793238 38830720

Neighbor

gene id symbol gene type direction distance location
XLOC_014964 NA coding downstream 77999 38680899 ~ 38688614 (-)
XLOC_014963 col16a1 coding downstream 154799 38473758 ~ 38611814 (-)
XLOC_014962 BX276085.2 coding downstream 302200 38464295 ~ 38464413 (-)
XLOC_014961 BX276085.1 coding downstream 302364 38464127 ~ 38464249 (-)
XLOC_014960 smap2 coding downstream 347038 38387255 ~ 38419575 (-)
XLOC_014966 CABZ01048582.1 coding upstream 330968 39203618 ~ 39203735 (-)
XLOC_014967 CT583726.2 coding upstream 554530 39427180 ~ 39579002 (-)
XLOC_014968 CT583726.1 coding upstream 715946 39588596 ~ 39589155 (-)
XLOC_014969 NA coding upstream 722779 39595429 ~ 39602691 (-)
XLOC_014970 NA coding upstream 882042 39754692 ~ 39758860 (-)
XLOC_014711 CR382300.3 misc downstream 19037858 19728690 ~ 19728755 (-)
XLOC_014959 NA non-coding downstream 393615 38323275 ~ 38372998 (-)
XLOC_014958 BX530058.1 non-coding downstream 704489 38062000 ~ 38062124 (-)

Expression


Co-expression Network