XLOC_014967 (CT583726.2)


Basic Information

Item Value
gene id XLOC_014967
gene name CT583726.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 39427180 ~ 39579002 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029507
tgATTGGCGGTCCTACCGTCACTCACATTGTTAATCACAAACAGCAAGGCTAGACGCTGAAAACTTTAGCTACGTACGAGTGTTTTAcatagaaaatgtttttaaaacacggATAACACATTCTATACGAGCTGACTGGACACGATGATATACAATACACCGAACAACACTTTTCATCGACAGACAGTAAGACAGGTGTCTCTAGCTGTATGTAGGGACACTTCATATGCTGTCGTTCCTCTCCAGATGTCTGCATAGTGCTTGAAAGAGGTATCGTGTTCGTCTTTTCTTTAAGGGTGACTCAGTCTCCATAGGCATTCACCATGGGGTGTAGACAGTGAGTTACTGCTTTTTTTCCTCTAGGAGAAGAGCTGAAAGGGGCTGCAATGTTATCTCTCTCAGACACACGCAATTTGGCCGGCAGTTTCTCCAGCCACCTTCTGATTCAATCAATAAGCAACAGGTGCCGTGTGCCTCTCCCCCGGGTGCTGCCAGCTTCTGCGGGGCTTTTAAGATCCCACACCATAATTAAGACTGTATCCAGTGAATCAGTCGGCCCAGCGCTCtacagctgacacacacacacacgcatccaAACAGCATCAGAACAAACGTACAGACATCACTTAGCATAAGTGCTACTCAGTTGGAGCCCAGCACTCCAGCTTACTCTAAACTGGTTTTC
>TCONS_00029506
tgATTGGCGGTCCTACCGTCACTCACATTGTTAATCACAAACAGCAAGGCTAGACGCTGAAAACTTTAGCTACGTACGAGTGTTTTAcatagaaaatgtttttaaaacacggATAACACATTCTATACGAGCTGACTGGACACGATGATATACAATACACCGAACAACACTTTTCATCGACAGACAGTAAGACAGGTGTCTCTAGCTGTATGTAGGGACACTTCATATGCTGTCGTTCCTCTCCAGATGTCTGCATAGTGCTTGAAAGAGGAGAAGAGCTGAAAGGGGCTGCAATGTTATCTCTCTCAGACACACGCAATTTGGCCGGCAGTTTCTCCAGCCACCTTCTGATTCAATCAATAAGCAACAGGTGCCGTGTGCCTCTCCCCCGGGTGCTGCCAGCTTCTGCGGGGCTTTTAAGATCCCACACCATAATTAAGACTGTATCCAGTGAATCAGTCGGCCCAGCGCTCtacagctgacacacacacacacgcatccaAACAGCATCAGAACAAACGTACAGACATCACTTAGCATAAGTGCTACTCAGTTGGAGCCCAGCACTCCAGCTTACTCTAAACTGGTTTTC
>TCONS_00030321
ttttaaaacacggATAACACATTCTATACGAGCTGACTGGACACGATGATATACAATACACCGAACAACACTTTTCATCGACAGACAGTAAGACAGGTGTCTCTAGCTGTATGTAGGGACACTTCATATGCTGTCGTTCCTCTCCAGATGTCTGCATAGTGCTTGAAAGAGGAGAAGAGCTGAAAGGGGCTGCAATGTTATCTCTCTCAGACACACGCAATTTGGCCGGCAGTTTCTCCAGCCACCTTCTGATTCAATCAATAAGCAACAGGTCAGAGAGAGATGCCGCTGAGCCGGGTGTTCATTTGCAGGTTCACAGGGGCTGACAGTGTTACAGGTTTAGGAAGGTGCTGAGGAAAGCTCACCTTCACATCTCATTGCAGCATCTGTTTGGAGTCGGGCCTGCCACGCCGCTGCCCTTTCACTGCAGTGTCTTCTTTAATTAGGCCAGAATGCCCAGAGACAACCAATAATCTGTCATCCCATATAAACACGTTCTGGGAAGTTCAATTATTTTAACCCCCTGTCAAATGTAGCTGCAGGCCGACGGGTGCACTGGTGTGTGTCTGTatgagtctctgtgtgtgtgccaGAGACAGACGTGTAAATGAGGTGCATATAAGTGTTTTTGTCACGTTTGGTTGGTTTCAAATATTGGTTGGTTTTAAGCTCAAATTGTGGTGTTGTTTCAGCATTTGCTGTGTTATCTGACAGTTTATGGTACCATTTTGAGCACAATAATGTATTATTTAgagttatatataatatataagtcAGAATATTAGCCCTGCcctggaattattagccccactgttaatttttttccctaattgctgtttaacagagagaaggttttcttaacacattttttaaacataatagttttaataactcatctctaataacagatttgttttatctttgccatgatgacagtacataatattttactagatattttca
>TCONS_00029508
tgATTGGCGGTCCTACCGTCACTCACATTGTTAATCACAAACAGCAAGGCTAGACGCTGAAAACTTTAGCTACGTACGAGTGTTTTAcatagaaaatgtttttaaaacacggATAACACATTCTATACGAGCTGACTGGACACGATGATATACAATACACCGAACAACACTTTTCATCGACAGACAGTAAGGAATTGCTCCAAATGGACTGTGTGCCTTGCCAGGCCTGTTCTCGGCTGTATTGACATGTTTCCAAATGGAAGCGGGTAAGCTGACAATGCACTACAACAGATGAGACTGAGTGCTGCTTGCTGAGACCGAGAGTTTAAGTGCAGCGGTAGAAGAGGAGCTCTTACCAATGAGTAAAAGACACACTGGGAGAAAATTGTTCTCTATAGCGTCTTTTGGCTGAATGGATCTAAAAGGTTCTTGTATAGGGGGAGACCATTGTGGGTGAATCTTGAATTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117395

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029507 False 685 lncRNA 0.46 3 39427180 39579002
TCONS_00029506 False 592 lncRNA 0.47 4 39427180 39579002
TCONS_00030321 False 963 lncRNA 0.41 4 39432317 39578903
TCONS_00029508 True 469 lncRNA 0.43 2 39560710 39579002

Neighbor

gene id symbol gene type direction distance location
XLOC_014966 CABZ01048582.1 coding downstream 223445 39203618 ~ 39203735 (-)
XLOC_014965 adgrb2 coding downstream 554530 38766613 ~ 38872650 (-)
XLOC_014964 NA coding downstream 738566 38680899 ~ 38688614 (-)
XLOC_014963 col16a1 coding downstream 815366 38473758 ~ 38611814 (-)
XLOC_014962 BX276085.2 coding downstream 962767 38464295 ~ 38464413 (-)
XLOC_014968 CT583726.1 coding upstream 9594 39588596 ~ 39589155 (-)
XLOC_014969 NA coding upstream 16427 39595429 ~ 39602691 (-)
XLOC_014970 NA coding upstream 175690 39754692 ~ 39758860 (-)
XLOC_014971 illr4 coding upstream 588361 40167363 ~ 40175800 (-)
XLOC_014972 efcab1 coding upstream 603639 40182641 ~ 40186328 (-)
XLOC_014711 CR382300.3 misc downstream 19698425 19728690 ~ 19728755 (-)
XLOC_014961 BX276085.1 non-coding downstream 962931 38464127 ~ 38464249 (-)
XLOC_014959 NA non-coding downstream 1054182 38323275 ~ 38372998 (-)
XLOC_014975 NA non-coding upstream 744959 40323961 ~ 40328584 (-)
XLOC_014976 CT027724.1 non-coding upstream 1057570 40636572 ~ 40636691 (-)

Expression


Co-expression Network