XLOC_014968 (CT583726.1)


Basic Information

Item Value
gene id XLOC_014968
gene name CT583726.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 39588596 ~ 39589155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029509
CCAGACACTGAGTCCTCACATGCAGAATCACACCACATGCTGcatttgtatatactgtaaatactgtatatagttCTAGAGCAAGTTTACAAGTGGTTTTCTGAGCGGTTGTTCTCATGTCGCTGGTCGGTCGCTGGACTCCTCTGGGTGTTTCGATGCGTTTAGTGATTCGCGGTGTCtggtaggttaggttagggtccctcacacggtttgcagcttgacgtgctgtgagggcttgtgtgcatcagtgatgctgagagcttcaccactggtacttcacagataccggcagggtcacccatagtggacaggtctcagctgagatgcccgactaagacaaaccGGCAGATTCTGGACCACAGAAGATCATACACTGAAGACAATGCCAACAACATCAGAATTAAGAAGACACAGGTGGAAGTGGAACAATCGACTgtacaagacaaaataaaataaa

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0035270 endocrine system development biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0021508 floor plate formation biological_process
GO:0021510 spinal cord development biological_process
GO:0021511 spinal cord patterning biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029509 True 457 lncRNA 0.47 2 39588596 39589155

Neighbor

gene id symbol gene type direction distance location
XLOC_014967 CT583726.2 coding downstream 9594 39427180 ~ 39579002 (-)
XLOC_014966 CABZ01048582.1 coding downstream 384861 39203618 ~ 39203735 (-)
XLOC_014965 adgrb2 coding downstream 715946 38766613 ~ 38872650 (-)
XLOC_014964 NA coding downstream 899982 38680899 ~ 38688614 (-)
XLOC_014963 col16a1 coding downstream 976782 38473758 ~ 38611814 (-)
XLOC_014969 NA coding upstream 6274 39595429 ~ 39602691 (-)
XLOC_014970 NA coding upstream 165537 39754692 ~ 39758860 (-)
XLOC_014971 illr4 coding upstream 578208 40167363 ~ 40175800 (-)
XLOC_014972 efcab1 coding upstream 593486 40182641 ~ 40186328 (-)
XLOC_014973 grn1 coding upstream 597522 40186677 ~ 40192249 (-)
XLOC_014711 CR382300.3 misc downstream 19859841 19728690 ~ 19728755 (-)
XLOC_014962 BX276085.2 non-coding downstream 1124183 38464295 ~ 38464413 (-)
XLOC_014961 BX276085.1 non-coding downstream 1124347 38464127 ~ 38464249 (-)
XLOC_014975 NA non-coding upstream 734806 40323961 ~ 40328584 (-)
XLOC_014976 CT027724.1 non-coding upstream 1047417 40636572 ~ 40636691 (-)
XLOC_014978 dre-mir-489 non-coding upstream 1192013 40781168 ~ 40781271 (-)

Expression


Co-expression Network