XLOC_014970


Basic Information

Item Value
gene id XLOC_014970
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 39754692 ~ 39758860 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029792
ACTGCAACAGCTCTGCAAAGCTTTGGTCTTTGACCAAGACTTTGGTCAGGAACCCAAAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGtagcagaagcaaagacaacaaaaaacagaAGTGATGTGGATGTCTTCGTCATATGGCATGactctgctgacccagcaacaaagaggagggtgtttaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaATTCAACATGTGGCCTAAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagCTGATGAGTATACCATTGACTGtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataaccaaattgttgtctcttttttttttttaaatacatagatatgtacagtatgtaagcattcctctaaaatcagtcag
>TCONS_00030323
tactttaaaaatccaattttgttttctaataagcaAAAAGTTAAATCACTTTACCcatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGCCCTTGCTCCAGTGACTGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACTGCAACAGCTCTGCAAAGCTTTGGTCTTTGACCAAGACTTTGGTCAGGAACCCAAAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGtagcagaagcaaagacaacaaaaaacagaAGTGATGTGGATGTCTTCGTCATATGGCATGactctgctgacccagcaacaaagaggagggtgtttaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaATTCAACATGTGGCCTAAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagCTGATGAGTATACCATTGACTGtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatc
>TCONS_00030324
gttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACTGCAACAGCTCTGCAAAGCTTTGGTCTTTGACCAAGACTTTGGTCAGGAACCCAAAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGtagcagaagcaaagacaacaaaaaacagaAGTGATGTGGATGTCTTCGTCATATGGCATGactctgctgacccagcaacaaagaggagggtgtttaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaATTCAACATGTGGCCTAAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagCTGATGAGTATACCATTGACTGtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatc
>TCONS_00030325
cattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACTGCAACAGCTCTGCAAAGCTTTGGTCTTTGACCAAGACTTTGGTCAGGAACCCAAAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGcagaagcaaagacaacaaaaaacagaAGTGATGTGGATGTCTTCGTCATATGGCATGactctgctgacccagcaacaaagaggagggtgtttaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaATTCAACATGTGGCCTAAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagCTGATGAGTATACCATTGACTGtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatc
>TCONS_00030326
taaaaacaacacattctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtaagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagtggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataagtatgttatcatttactttatatttaatgagtgaaaatataatcgtttgtccagtttagggtaactatgtctaataaaactttgattcattcatattatttattatttttttactttaaaaaatattacatttcaagtactaagtttagaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttctcacatataacgttggtcatgcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgttttccacaatagaaatcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcataattgtttcaatattaaagaacatcaagtgtttccaatggtttattgtaaaaacaattattttccatgcctttaaaggaaaaaagtcagaaattttgcccgtctgagcacattttattcattgtaaaacacaaaactaaacaaaaaacagtttaatctaccacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaggtgtaaattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagattactttaaaaatccaattttgttttctaataagcaAAAAGTTAAATCACTTTACCcatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTAAAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACTGCAACAGCTCTGCAAAGCTTTGGTCTTTGACCAAGACTTTGGTCAGGAACCCAAAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGcagaagcaaagacaacaaaaaacagaAGTGATGTGGATGTCTTCGTCATATGGCATGactctgctgacccagcaacaaagaggagggtgtttaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaATTCAACATGTGGCCTAAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctacaaggtacctgcaagttttggctggagcagagaacatacattttttaaataaagctccagCTGATGAGTATACCATTGACTGtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatc
>TCONS_00029793
ggtaaaaacaacacattctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtaagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagtggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataagtatgttatcatttactttatatttaatgagtgaaaatataatcgtttgtccagtttagggtaactatgtctaataaaactttgattcattcatattatttattatttttttactttaaaaaatattacatttcaagtactaagtttagaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGA
>TCONS_00029794
ggtaaaaacaacacattctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtaagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagtggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataagtatgttatcatttactttatatttaatgagtgaaaatataatcgtttgtccagtttagggtaactatgtctaataaaactttgattcattcatattatttattatttttttactttaaaaaatattacatttcaagtactaagtttagaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGA
>TCONS_00029795
ggtaaaaacaacacattctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtaagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagtggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataagtatgttatcatttactttatatttaatgagtgaaaatataatcgtttgtccagtttagggtaactatgtctaataaaactttgattcattcatattatttattatttttttactttaaaaaatattacatttcaagtactaagtttagaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGCCCTTGCTCCAGTGA

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029792 False 700 lncRNA 0.39 4 39754692 39755650
TCONS_00030323 False 1065 lncRNA 0.40 7 39754776 39757506
TCONS_00030324 False 911 lncRNA 0.41 7 39754776 39758129
TCONS_00030325 False 957 lncRNA 0.41 7 39754776 39758178
TCONS_00030326 False 2444 lncRNA 0.35 6 39754776 39758858
TCONS_00029793 False 934 lncRNA 0.37 3 39755827 39758860
TCONS_00029794 False 937 lncRNA 0.37 3 39755906 39758860
TCONS_00029795 True 973 lncRNA 0.38 3 39756742 39758860

Neighbor

gene id symbol gene type direction distance location
XLOC_014969 NA coding downstream 152001 39595429 ~ 39602691 (-)
XLOC_014968 CT583726.1 coding downstream 165537 39588596 ~ 39589155 (-)
XLOC_014967 CT583726.2 coding downstream 175690 39427180 ~ 39579002 (-)
XLOC_014966 CABZ01048582.1 coding downstream 550957 39203618 ~ 39203735 (-)
XLOC_014965 adgrb2 coding downstream 882042 38766613 ~ 38872650 (-)
XLOC_014971 illr4 coding upstream 408503 40167363 ~ 40175800 (-)
XLOC_014972 efcab1 coding upstream 423781 40182641 ~ 40186328 (-)
XLOC_014973 grn1 coding upstream 427817 40186677 ~ 40192249 (-)
XLOC_014974 grn2 coding upstream 437602 40196462 ~ 40199098 (-)
XLOC_014975 NA coding upstream 565101 40323961 ~ 40328584 (-)
XLOC_014711 CR382300.3 misc downstream 20025937 19728690 ~ 19728755 (-)
XLOC_014964 NA non-coding downstream 1066078 38680899 ~ 38688614 (-)
XLOC_014976 CT027724.1 non-coding upstream 877712 40636572 ~ 40636691 (-)
XLOC_014978 dre-mir-489 non-coding upstream 1022308 40781168 ~ 40781271 (-)
XLOC_014981 NA non-coding upstream 1150915 40909775 ~ 40985319 (-)
XLOC_014982 NA non-coding upstream 1162292 40921152 ~ 40922192 (-)

Expression


Co-expression Network