XLOC_014972 (efcab1)


Basic Information

Item Value
gene id XLOC_014972
gene name efcab1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40182641 ~ 40186328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029511
ACACGTTTCCACAGCAACATTCAACCAAAGACTAAAAAGAgagtaaaacatgctgaaaatgTCGGCGATGAACAGAAAATTAATTCAAAACCTCGCCGAGACTTTATGCAGACAAGTCAAACATTTTAATAAAACAGAGACGGAGTGTCTGATAAGGCTGTTCAACAGTCTGCTGGGAGAGCAGGCAGAGAGAAAGACGACTATTGGAGTGGACCGGGCCAAATTCAGAAATATACTGCACCACACTTTCGGGATGACCGACGACATGATGACGGACAGAGTTTGTCGTGTCATTGACAAGGACAACGATGGCTACTTAAGCGTTAAAGAGTGGGTTGAggctctgtctgtctttctaagAGGCACACTGGATGAAAAAATGAAATaCTGTTTTGAGGTGTATGACCTGAACGGGGATGGATACATCTCACGTGAGGAGATGTTTCAGATGCTGAAAGACAGCCTCATCAGGCAGCCCACCGAAGAGGATCCTGATGAGGGGATTAAGGATATTGTGGAGATTGCCTTGAAAAAAATGGATTATGACCATGATGGAAGAGTTTCTTATGCTGATTTTGAGAAGACGGTCATGGATGAAAACCTTTTACTAGAAGCTTTTGGAAACTGCCTTCCTGATGCAAAGAGTGTACTAGCATTTGAGCAACAGGCATTCCAGAAACACGAACACTGCAAAGAATAACCGGATTTTGAGGGAAAACAACAAATTGTCAAACAATATTTGATGCTGAAACTCAATAAATAACCAAAACA
>TCONS_00029512
CGATGAACAGAAAATTAATTCAAAACCTCGCCGAGACTTTATGCAGACAAGTCAAACATTTTAATAAAACAGAGACGGAGTGTCTGATAAGGCTGTTCAACAGTCTGCTGGGAGAGCAGGCAGAGAGAAAGACGACTATTGGAGTGGACCGGGCCAAATTCAGAAATATACTGCACCACACTTTCGGGATGACCGACGACATGATGACGGACAGAGTTTGTCGTGTCATTGACAAGGACAACGATGGCTACTTAAGCGTTAAAGAGTGGGTTGAggctctgtctgtctttctaagAGGCACACTGGATGAAAAAATGAAATGTGTATGACCTGAACGGGGATGGATACATCTCACGTGAGGAGATGTTTCAGATGCTGAAAGACAGCCTCATCAGGCAGCCCACCGAAGAGGATCCTGATGAGGGGATTAAGGATATTGTGGAGATTGCCTTGAAAAAAATGGATTATGACCATGATGGAAGAGTTTCTTATGCTGATTTTGAGAAGACGGTCATGGATGAAAACCTTTTACTAGAAGCTTTTGGAAACTGCCTTCCTGATGCAAAGAGTGTACTAGCATTTGAGCAACAGGCATTCCAGAA

Function

symbol description
efcab1 Predicted to enable calcium ion binding activity. Involved in cilium movement. Orthologous to human EFCAB1 (EF-hand calcium binding domain 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040914-40 Predicted to enable calcium ion binding activity. Involved in cilium movement. Orthologous to human EFCAB1 (EF-hand calcium binding domain 1).

Ensembl:

ensembl_id ENSDARG00000061377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029511 False 771 mRNA 0.42 6 40182641 40186328
TCONS_00029512 True 602 nonsense_mediated_decay 0.44 6 40182734 40186263

Neighbor

gene id symbol gene type direction distance location
XLOC_014971 illr4 coding downstream 6841 40167363 ~ 40175800 (-)
XLOC_014970 NA coding downstream 423781 39754692 ~ 39758860 (-)
XLOC_014969 NA coding downstream 579950 39595429 ~ 39602691 (-)
XLOC_014968 CT583726.1 coding downstream 593486 39588596 ~ 39589155 (-)
XLOC_014967 CT583726.2 coding downstream 603639 39427180 ~ 39579002 (-)
XLOC_014973 grn1 coding upstream 349 40186677 ~ 40192249 (-)
XLOC_014974 grn2 coding upstream 10134 40196462 ~ 40199098 (-)
XLOC_014975 NA coding upstream 137633 40323961 ~ 40328584 (-)
XLOC_014976 CT027724.1 coding upstream 450244 40636572 ~ 40636691 (-)
XLOC_014977 calcr coding upstream 530647 40716975 ~ 40826024 (-)
XLOC_014711 CR382300.3 misc downstream 20453886 19728690 ~ 19728755 (-)
XLOC_014966 CABZ01048582.1 non-coding downstream 978906 39203618 ~ 39203735 (-)
XLOC_014978 dre-mir-489 non-coding upstream 594840 40781168 ~ 40781271 (-)
XLOC_014981 NA non-coding upstream 723447 40909775 ~ 40985319 (-)
XLOC_014982 NA non-coding upstream 734824 40921152 ~ 40922192 (-)

Expression


Co-expression Network