XLOC_014974 (grn2)


Basic Information

Item Value
gene id XLOC_014974
gene name grn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40196462 ~ 40199098 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029515
CAGCAGAAGCATCCCGAACAGAAGGAAAACCAGCCAGAAAGATGTTCCCAGTGTTGATGTTACTCATGGCGGCTCTGGTGGCTGCAGATGAGCCTCTGCTGGATCTGTCCATTCCGATGGAGACTGAAGACGTCTCTGCCTCTGTGATTCACTGCGATGCTCGAACTGTGTGTCCAGATAGAACAACATGCTGTCGGACTCCATATGGCAAATGGACATGTTGTCCATTCCCAATGGGTCAGTGTTGCAGGGATGGGATTCACTGCTGTCGACACGGTTATCGTTGCAATTTCGCCTCCACCCGATGCCTGCGAGGCTGGCTGTCACTGCCATCGTCCTTCCAGGAGGCCACCAGAACCTTCGAGAAAGATCAGACCCAGGCTGAGACTGTCCAATGTGAAGGAAATTTCTACTGCCCGGCTGAGAAGTTTTGCTGCAAGACTGGAACTGGCCAGTGGGGCTGCTGCAGCGAGTTGGAGTTGTAAGCAAACAACCACTGTTACACTGGTTCACCTCTTACTGAAGACTGTCAAAATGCAAGAGGCTCCAAACTTCATTCATGTTTCAGGCTATAGTTTACTCTTACTGAATtagtgtgaaataaaaactaaaagaatTACTGTCAAAATGCACCGTCATTTAATAAATCTTTGTGATTAGTGGGAAAA
>TCONS_00029516
CAGAATGACACAGACAGCAGCAGAAGCATCCCGAACAGAAGGAAAACCAGCCAGAAAGATGTTCCCAGTGTTGATGTTACTCATGGCGGCTCTGGTGGCTGCAGATGAGCCTCTGCTGGATCTGTCCATTCCGATGGAGACTGAAGACGTCTCTGCCTCTGTGATTCACTGCGATGCTCGAACTGTGTGTCCAGATAGAACAACATGCTGTCGGACTCCATATGGCAAATGGACATGTTGTCCATTCCCAATGGGTCAGTGTTGCAGGGATGGGATTCACTGCTGTCGACACGGTTATCGTTGCAATTTCGCCTCCACCCGATGCCTGCGAGGCTGGCTGTCACTGCCATCGTCCTTCCAGGAGGCCACCAGAACCTTCGAGAAAGATCAGACCCAGGCTGAGACTGTCCAATGTGAAGGAAATTTCTACTGCCCGGCTGAGAAGTTTTGCTGCAAGACTGGAACTGGCCAGTGGGGCTGCTGCAGCGGTAAAACAGACTTCATATCACTGTATTAATAAGCATGGCTAATCAAGAagcataatataatacaattcacTTACAACCTGTATTTCTGTTGTTTATAGAGTTGGAGTTGTAAGCAAACAACCACTGTTACACTGGTTCACCTCTTACTGAAGACTGTCAAAATGCAAGAGGCTCCAAACTTCATTCATGTTTCAGGCTATAGTTTACTCTTACTGAATtagtgtgaaataaaaactaaaagaatTACTGTCAAAATGCACCGTCATTTAATAAATCTTTGTGATTAGTGGGAAAA
>TCONS_00029517
ATGTTCCCAGTGTTGATGTTACTCATGGCGGCTCTGGTGGCTGCAGATGAGCCTCTGCTGGATCTGTCCATTCCGATGGAGACTGAAGACGTCTCTGCCTCTGTGATTCACTGCGATGCTCGAACTGTGTGTCCAGATAGAACAACATGCTGTCGGACTCCATATGGCAAATGGACATGTTGTCCATTCCCAATGGGTCAGTGTTGCAGGGATGGGATTCACTGCTGTCGACACGGTTATCGTTGCAATTTCGCCTCCACCCGATGCCTGCGAGGCTGGCTGTCACTGCCATCGTCCTTCCAGGAGGCCACCAGAACCTTCGAGAAAGATCAGACCCAGGCTGAGACTGTCCAATGTGAAGGAAATTTCTACTGCCCGGCTGAGAAGTTTTGCTGCAAGACTGGAACTGGCCAGTGGGGCTGCTGCAGCGAGTTGGAGTTGTAAGCAAACAACCACTGTTACACTGGTTCACCTCTTACTGAAGACTGTCAAAATGCAAGAGGC

Function

symbol description
grn2 Predicted to be active in extracellular region. Is expressed in brain; digestive system; gill; pharyngeal arch; and pleuroperitoneal region.

GO:

id name namespace
GO:0051960 regulation of nervous system development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-264 Predicted to be active in extracellular region. Is expressed in brain; digestive system; gill; pharyngeal arch; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000088641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029515 False 668 mRNA 0.48 5 40196462 40199081
TCONS_00029516 False 783 mRNA 0.46 4 40196462 40199098
TCONS_00029517 True 504 mRNA 0.52 4 40196585 40198478

Neighbor

gene id symbol gene type direction distance location
XLOC_014973 grn1 coding downstream 4213 40186677 ~ 40192249 (-)
XLOC_014972 efcab1 coding downstream 10134 40182641 ~ 40186328 (-)
XLOC_014971 illr4 coding downstream 20662 40167363 ~ 40175800 (-)
XLOC_014970 NA coding downstream 437602 39754692 ~ 39758860 (-)
XLOC_014969 NA coding downstream 593771 39595429 ~ 39602691 (-)
XLOC_014975 NA coding upstream 124863 40323961 ~ 40328584 (-)
XLOC_014976 CT027724.1 coding upstream 437474 40636572 ~ 40636691 (-)
XLOC_014977 calcr coding upstream 517877 40716975 ~ 40826024 (-)
XLOC_014978 dre-mir-489 coding upstream 582070 40781168 ~ 40781271 (-)
XLOC_014979 tfpi2 coding upstream 649011 40848109 ~ 40855106 (-)
XLOC_014711 CR382300.3 misc downstream 20467707 19728690 ~ 19728755 (-)
XLOC_014968 CT583726.1 non-coding downstream 607307 39588596 ~ 39589155 (-)
XLOC_014967 CT583726.2 non-coding downstream 617460 39427180 ~ 39579002 (-)
XLOC_014966 CABZ01048582.1 non-coding downstream 992727 39203618 ~ 39203735 (-)
XLOC_014981 NA non-coding upstream 710677 40909775 ~ 40985319 (-)
XLOC_014982 NA non-coding upstream 722054 40921152 ~ 40922192 (-)

Expression


Co-expression Network