XLOC_014977 (calcr)


Basic Information

Item Value
gene id XLOC_014977
gene name calcr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40716975 ~ 40826024 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029519
GGGGCTCAAAGTGCTGTCTACTAAGGCAGCTCACTAGGATTTAAAACACAGCCCGAATGTGTGCGTTGAGCGCAATGGAGCCGCTGTCAGAGACTCGAGGAGGAGCCCACACACTCCACATGCTCGCCGACAGATGAGCTGAGCGCCAGTTAGATGCACTTGGATTACCGGCTGCTGAACTGAAACAACGTCTCTGCccataaaaaaatatgttaaacagtGACGTTTCTGATTACACTTCTTTTTAATGACAGGATATATCTCCGACGGAGATAAAACACAAGATGCTGTGAATGCATCACTTGTTTTAGTGCCAGACGATGGAATTCAGTTTGAGGAGCCCAGCGTAAGAAAGTGAAGTACGGATTTACATTCTCATCTGCGTAAAGATAAAGTCAGGATTTGAGAGCATGGGTTGGCAAGAGACCCTATGGCTTTTGACATCATTTATCCTGAGCATAACAAAAGCTGGAACAACAGAGACGAAAGCAGATCCCGGAGCTGACTTATCACTTTCTCCTGTCATGATGGCAATGGAGAGAGAAAGGCTGATCATGACTCAGTCTCAGTACAAATGTCTGGAGCTGCTGAGCCGAGATGGATCCCATAATAAAACAGGATCGTTCTGCAGCAGATTCTGGGACGGTTTGCTTTGTTGGGATGAAACTCCAGCTGGAACCTTTGCCTCACAAAACTGCCCCGATTACCCCAGCTTTGACCCCTTGGAAAAAGTAACCAAATACTGTGACGAATCTGGCAACTGGGTACACAGCGCATCCATCAATAAAACATGGTCCCACTGCCTCACGTTCTCAAAGGataaaattaagACGTTACCAGTTCACGGCTTTTCAGAGACAGAGACGGAGCTGGATCCCACAGCGGAGAGCAAGGTCAGCCCTGTAGTGATTCAGAAAGCGGAGGAGAGGAAGATGATCATCGACGGTCAATATAAATGCTTTGAGAAAATGAACAGGGACCAGCCTTACAACAAATCAGGTTTATACTGTAACCGCACGTGGGACGGCTGGCTGTGCTGGGACGATACTCCAGCAGGGACGTTCACGTCGCAGTACTGCCCCAATTACTTTGCTGACTTTGACTCCACTGAAAAGGTTACCAAGTATTGTGATGAGACTGGCAACTGGTTCAGACACCCTGAGACCAACAGGACATGGTCAAACTACACCCTCTGCATCGCTCACACCAAGGACAAGCTCAAGATGGCGTATATTTTGTATTACATGGCGATTGTGGGTCACGCTCTTTCTATAGTGTCTCTCCTCATCTCGCTGGCCATTTTCTTCTATTTCAGGAGTCTGAGCTGTCAGAGAATCACACTCCACAAGAACCTGTTCTGCTCGTATGTGCTCAACTCAGCCTTCACCATCGTCAACCTCATCACGGTGGTCAACAACCCTAAAGTGGTCCAGAGGAACCCGATCAGCTGCAAGGTGCTGCACTTCTTCCACATGTACATGCTGGGCTGTAACTATTTCTGGATGCTCTGTGAAGGGATTTACCTGCACACACTGATCGTGGTGGCTGTGTTCGCAGAGGAGCAGCACCTACACTGGTATTATCTTTTGGGCTGGGGATTCCCCCTGGTGCCTGCATCCATCCATGCTGTGGCGAGGAAGAAATACTTTGATGACAACTGCTGGATGAGTGTGGAGACGCATCTGCTCTACGTGGTTCACGGCCCCATTATGGCAGCTTTATTAgtcaatttattttttctactgAACATAGTACGGGTTTTGGTGACTAAACTGAGAGATACGCACCGAGCGGAGTCTAACATGTACATGAAGGCAGTGAGAGCCACTCTCATTCTGGTGCCCTTATTGGGCATTCAGTTCGTCATTATCCCTTGGCGACCGGAGAACCGCTTGGCGGGAGAGATATATGATTACATCATGCACATATTAATGCACTACCAGGGTCTGCTGGTGGCAACCATATTCTGCTTTTTCAACGGAGAGGTCCAGGGAGCTTTGAAAAGGCAGTGGATGCAATATAAAGCGCAGTGGGGTCAGAGACGGCGTGAACACTGCTCCATGAGATCTACATCCTACACCGCAACCTCCATCACTGAGGTGCCTGCGTTCATGTTTCACCACGACTGCAACAGCGAACACTTGAACGGTAAACAAACAGAGGACTCCGAGCTCGTGGCTCTCAAGACGGGCGAAACGTACGCGTGAACAAAACAGATAATACTAGGAAAAGAAGTGATTCAATCAAACCAGAGACGGCAGACTCCTTTCTGACTGAACGTTCGTAAACTCCCCCATCTCAGCACTTAGAGAGCCGACAGCAGAACATTCACAGTCTGCGTGTTGGCAAATCTGTTGAAATATTACACCAGGCTTTGTTTATACTCTCTGCAGCTCTGCTTCTGTGAGGGAAAATGCAAAGGAAATCTGAAAAATAATGACTTTTCggaaaatatgtcattttaaagCTGCTAGTTTTCACATCCTTTTGGGGTCTGTGGccgcaaacaaacaaaaaaagttactttGCAAAAACCAAAGGATGTGCGGATTTGTGGGACTCCGAGACTGTTTCGCTACAGCTACTGGGAAATGGTTCTCTAGAGGACAAGCTTCGCTCATGCGTCTGCGTCTCTGAACAAAGGAAAGTTCTTCTGTGCCTGAATCCTGTTCCCGATGCCGTTTGATGGTCATTTCGCATCTGAAAATAGCTTTTTATCTGTGTTGCAAGATTTTTATGACtgctttattgtttttgcagCTGTGCTTTTCTGCCTTTTCTTTGTCTTGAGAGCGGGTGTGGAGGGAAAGGATGAACAACGTGGACCATTTAAAAG
>TCONS_00029520
ggatatttttttacagtaggatttcatttaaaatgtcaaaatataagtaattacagaattttcatttctgtATTCTGGGACGGTTTGCTTTGTTGGGATGAAACTCCAGCTGGAACCTTTGCCTCACAAAACTGCCCCGATTACCCCAGCTTTGACCCCTTGGGTAAGAATCAGGTCGATCATGAGCTGGAGTTAATCACTGAAAAAGTAACCAAATACTGTGACGAATCTGGCAACTGGGTACACAGCGCATCCATCAATAAAACATGGTCCCACTGCCTCACGTTCTCAAAGGataaaattaagACGTTACCAGTTCACGGCTTTTCAGAGACAGAGACGGAGCTGGATCCCACAGCGGAGAGCAAGGTCAGCCCTGTAGTGATTCAGAAAGCGGAGGAGAGGAAGATGATCATCGACGGTCAATATAAATGCTTTGAGAAAATGAACAGGGACCAGCCTTACAACAAATCAGGTTTATACTGTAACCGCACGTGGGACGGCTGGCTGTGCTGGGACGATACTCCAGCAGGGACGTTCACGTCGCAGTACTGCCCCAATTACTTTGCTGACTTTGACTCCACTGAAAAGGTTACCAAGTATTGTGATGAGACTGGCAACTGGTTCAGACACCCTGAGACCAACAGGACATGGTCAAACTACACCCTCTGCATCGCTCACACCAAGGACAAGCTCAAGATGGCGTATATTTTGTATTACATGGCGATTGTGGGTCACGCTCTTTCTATAGTGTCTCTCCTCATCTCGCTGGCCATTTTCTTCTATTTCAGGAGTCTGAGCTGTCAGAGAATCACACTCCACAAGAACCTGTTCTGCTCGTATGTGCTCAACTCAGCCTTCACCATCGTCAACCTCATCACGGTGGTCAACAACCCTAAAGTGGTCCAGAGGAACCCGGTCTGCAAGGTGCTGCACTTCTTCCACATGTACATGCTGGGCTGTAACTATTTCTGGATGCTCTGTGAAGGGATTTACCTGCACACACTGATCGTGGTGGCTGTGTTCGCAGAGGAGCAGCACCTACACTGGTATTATCTTTTGGGCTGGGGATTCCCCCTGGTGCCTGCATCCATCCATGCTGTGGCGAGGAAGAAATACTTTGATGACAACTGCTGGATGAGTGTGGAGACGCATCTGCTCTACGTGGTTCACGGCCCCATTATGGCAGCTTTATTAgtcaatttattttttctactgAACATAGTACGGGTTTTGGTGACTAAACTGAGAGATACGCACCGAGCGGAGTCTAACATGTACATGAAGGCAGTGAGAGCCACTCTCATTCTGGTGCCCTTATTGGGCATTCAGTTCGTCATTATCCCTTGGCGACCGGAGAACCGCTTGGCGGGAGAGATATATGATTACATCATGCACATATTAATGCACTACCAGGGTCTGCTGGTGGCAACCATATTCTGCTTTTTCAACGGAGAGGTCCAGGGAGCTTTGAAAAGGCAGTGGATGCAATATAAAGCGCAGTGGGGTCAGAGACGGCGTGAACACTGCTCCATGAGATCTACATCCTACACCGCAACCTCCATCACTGAGGTGCCTGCGTTCATGTTTCACCACGACTGCAACAGCGAACACTTGAACGGTAAACAAACAGAGGACTCCGAGCTCGTGGCTCTCAAGACGGGCGAAACGTACGCGTGA
>TCONS_00029521
tgtttaacagagcaaagaaattttcacagtatgtctgataatattttttcttctggagaaagtcttatttgttttatttcagctagaattaaaagagtttttaatattttaaaaaccattttagggacaaaattattagaccctttaaGATCGTTCTGCAGCAGATTCTGGGACGGTTTGCTTTGTTGGGATGAAACTCCAGCTGGAACCTTTGCCTCACAAAACTGCCCCGATTACCCCAGCTTTGACCCCTTGGGTAAGAATCAGGTCGATCATGAGCTGGAGTTAATCACTGAAAAAGTAACCAAATACTGTGACGAATCTGGCAACTGGGTACACAGCGCATCCATCAATAAAACATGGTCCCACTGCCTCACGTTCTCAAAGGataaaattaagACGTTACCAGTTCACGGCTTTTCAGAGACAGAGACGGAGCTGGATCCCACAGCGGAGAGCAAGGTCAGCCCTGTAGTGATTCAGAAAGCGGAGGAGAGGAAGATGATCATCGACGGTCAATATAAATGCTTTGAGAAAATGAACAGGGACCAGCCTTACAACAAATCAGGTTTATACTGTAACCGCACGTGGGACGGCTGGCTGTGCTGGGACGATACTCCAGCAGGGACGTTCACGTCGCAGTACTGCCCCAATTACTTTGCTGACTTTGACTCCACTGAAAAGGTTACCAAGTATTGTGATGAGACTGGCAACTGGTTCAGACACCCTGAGACCAACAGGACATGGTCAAACTACACCCTCTGCATCGCTCACACCAAGGACAAGCTCAAGATGGCGTATATTTTGTATTACATGGCGATTGTGGGTCACGCTCTTTCTATAGTGTCTCTCCTCATCTCGCTGGCCATTTTCTTCTATTTCAGGAGTCTGAGCTGTCAGAGAATCACACTCCACAAGAACCTGTTCTGCTCGTATGTGCTCAACTCAGCCTTCACCATCGTCAACCTCATCACGGTGGTCAACAACCCTAAAGTGGTCCAGAGGAACCCGGTCTGCAAGGTGCTGCACTTCTTCCACATGTACATGCTGGGCTGTAACTATTTCTGGATGCTCTGTGAAGGGATTTACCTGCACACACTGATCGTGGTGGCTGTGTTCGCAGAGGAGCAGCACCTACACTGGTATTATCTTTTGGGCTGGGGATTCCCCCTGGTGCCTGCATCCATCCATGCTGTGGCGAGGAAGAAATACTTTGATGACAACTGCTGGATGAGTGTGGAGACGCATCTGCTCTACGTGGTTCACGGCCCCATTATGGCAGCTTTATTAgtcaatttattttttctactgAACATAGTACGGGTTTTGGTGACTAAACTGAGAGATACGCACCGAGCGGAGTCTAACATGTACATGAAGGCAGTGAGAGCCACTCTCATTCTGGTGCCCTTATTGGGCATTCAGTTCGTCATTATCCCTTGGCGACCGGAGAACCGCTTGGCGGGAGAGATATATGATTACATCATGCACATATTAATGCACTACCAGGGTCTGCTGGTGGCAACCATATTCTGCTTTTTCAACGGAGAGGTCCAGGGAGCTTTGAAAAGGCAGTGGATGCAATATAAAGCGCAGTGGGGTCAGAGACGGCGTGAACACTGCTCCATGAGATCTACATCCTACACCGCAACCTCCATCACTGAGGTGCCTGCGTTCATGTTTCACCACGACTGCAACAGCGAACACTTGAACGGTAAACAAACAGAGGACTCCGAGCTCGTGGCTCTCAAGACGGGCGAAACGTACGCGTGA

Function

symbol description
calcr Predicted to enable calcitonin receptor activity. Predicted to contribute to amylin receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0097643 amylin receptor activity molecular_function
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004948 calcitonin receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04380 Osteoclast differentiation
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-060503-420 Predicted to enable calcitonin receptor activity. Predicted to contribute to amylin receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor).

Ensembl:

ensembl_id ENSDARG00000028845

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029519 False 2836 mRNA 0.47 16 40716975 40826024
TCONS_00029520 False 1680 mRNA 0.48 15 40717604 40776267
TCONS_00029521 True 1773 mRNA 0.47 15 40717604 40776608

Neighbor

gene id symbol gene type direction distance location
XLOC_014976 CT027724.1 coding downstream 80284 40636572 ~ 40636691 (-)
XLOC_014975 NA coding downstream 388391 40323961 ~ 40328584 (-)
XLOC_014974 grn2 coding downstream 517877 40196462 ~ 40199098 (-)
XLOC_014973 grn1 coding downstream 524726 40186677 ~ 40192249 (-)
XLOC_014972 efcab1 coding downstream 530647 40182641 ~ 40186328 (-)
XLOC_014979 tfpi2 coding upstream 22085 40848109 ~ 40855106 (-)
XLOC_014980 bet1 coding upstream 73886 40899910 ~ 40906161 (-)
XLOC_014981 NA coding upstream 83751 40909775 ~ 40985319 (-)
XLOC_014982 NA coding upstream 95128 40921152 ~ 40922192 (-)
XLOC_014983 sgce coding upstream 212644 41038668 ~ 41069701 (-)
XLOC_014711 CR382300.3 misc downstream 20988220 19728690 ~ 19728755 (-)
XLOC_014970 NA non-coding downstream 958115 39754692 ~ 39758860 (-)
XLOC_014969 NA non-coding downstream 1114284 39595429 ~ 39602691 (-)
XLOC_014968 CT583726.1 non-coding downstream 1127820 39588596 ~ 39589155 (-)
XLOC_014987 NA non-coding upstream 619570 41445594 ~ 41468979 (-)
XLOC_014989 NA non-coding upstream 667753 41493777 ~ 41506484 (-)
XLOC_014990 NA non-coding upstream 686718 41512742 ~ 41513258 (-)

Expression


Co-expression Network