XLOC_014984 (pdk4)


Basic Information

Item Value
gene id XLOC_014984
gene name pdk4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41190258 ~ 41213718 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029531
cgTTAATCTTTGATGGCAGCACCAATCCAGCCCACCCCAAACACATTGGCAGTATCGACCCAAACTGTGACGTTGTAGAGGTCGTCAGAGATGCCTATGAAAGCTCCAAGATGCTGTGTGATCAGTACTACTTGACCTCTCCTGAAGTGGAAATCAAACAAGTGAACATTAAAGGACCCAGTGACCCTATACATATAGTTTATGTGCCTTCTCATCTCTACCACATGCTCTTTGAGCTTTTCAAGAATGCAATGAGAGCAACTGTGGAAACCCACGAGACCAGCCTTCATCTCCCACCAATCAAAGTGAGAGTTTCTCTAGGAACAGAAGATCTGACTATTAAGATGTCTGACAGAGGCAGTGGAGTTCCTTTGAGGAAAATTGAACGACTTTTTAGCTACATGTATTCAACTGCGCCGAGTCCTGTGGCTGAAGACACTCGCAATGCTCCCCTGgcTGGTTTTGGCTATGGTCTTCCTATCTCTCGTCTCTATGCTAAATACTTCCAGGGAGATCTGCAGCTCTACTCTATGGAGGGATATGGCACATCTGCAGTCATTTATCTAAAGGCCTTATCCACTGAATCAATAGAGAGGCTTCCTGTCTTCAACAAGTCAGCCTTAAGGCACTATCAAACCAGCACAGAAGCGGATGATTGGTGCATCCCGAGCAGCGAGCCCAAGAAACTAGGAAAGTATGAGTTCAGCGTTTGAGAAACTCATTAGATAAGCAGCATATGGACTGAACGCAGCTAGGAATGACCCATAGTGGAGGAGGCCTCGAGTTCATTTGGGTAACTATATATGTGACTCTTCAGGTATTTCAGAAGAATGGTGTAATCAAATGATTGATAATTGACTTGATGAATGTTACAGTCTAAACAACAAAACACCAAGGGCATTTTTGTCTTCCACGTTGCTTATAATACACCACACAAGCTTCATTTGCAGTGCTAACTCTTTCATTTAGAGTTTCTACGGGATAAAGTAAAGTACATTTCTTCCGAGACGTCAGAGACTTAAGTAGAGTTGTTGTTTGAGCATGTGTTGATTTCTACACATTACCACTGATTTTGAACTGATTCTGTAAGTGTGTTTCAGTGTATACGCAAACTTGTGTTTTAGTCTATGGGGCCAAGTTACCAGCTTTGTGTTGAGTTATAGCATGCACATATTTGGAAAAAGCAACCAAAAGTAGCCAAGGCTGTGTTTACGTCCTTGGTTGAAAATGCATTTGCAATGCAACCCTTAGAATGACCATAGTTGTGTGTGTATTGCTTGATTGTGAACTTGAAATGTTCCAGTAACCGTTGGACCTACTGTCTAACACTCCATTTCGTTTGAAATGTAAATGCATGTCCTTATCATTGAGGCCAAATCATTTCATCCACTTCTAAGAAGGGGttatatattgaatttaaaaacCCTTAATACTAGTGCCACCAGTGGTCATTAAGTGATCTGCAGCCAGCAACTAACTGAATTCTTGTATTAGCGTGCAtgtaaaatacaatagaatatatacagtagaagtcagaatgatgttaaaatttgtacatttttttccccaatatctgatTAAcgtagaagatttttttcaacacatttctaaacataactcatttctaataactggtttctttaactttgtcatgatgacagaatattttaacacatatgtttttaatatactagtattcggcttaaagtgacatttaaaagcttaactaggcaagtttgtgtaattgggcaagtcattgtatgaaagtggtttgttctgtagccagttgaaaataaaaactaaaaaataaataatactttttctagaagaaaaaaaaatcattggaaattatttaaaaattaaggtATGTCtgatagggttgggcga
>TCONS_00029532
CCCTGTTTTGTGCCTTGTGCTGCTCATTATTTCAACGCAATGACAAATTAAACTGGATTAGAGTGATTCGGGAGGACTCTTCGTCTGACAGGATTTCTGCGATGATAAAGTAACAGGCTGCTCGAGAATGTCAAACTTTGCCAACTGCATCTGATGAGACAAGGACGAAAACATTTGCAACATCTGTGGATTAAACTTGAAGATCAAGATGAAGTTCGCCCAGATCATGCTGAAGAACAGCTCGAAGCTGAACATACCCAAGCAAGTGGACAGATTTTCTAAATTCTCCCCGTCGCCGCTGTCAATGAAGCAGTTCATAGACTTTGGATCTGCCAATGCGTGTGAGAAGACCTCCTTCATGTTTCTGAGGCAGGAGCTTCCCGTCCGGCTAGCGAACATCATGAAGGAGATCGACTTTCTTCCGGACAAACTGCTCGGCACTCCTTCACTGAAGCTGCTGCAGAGCTGGTACGCTCAGAGTCTAATGGAGCTGGTGGACTTTTTGGAGAAAGACCCTGATGATAAAAAAATCCTGACTAAATTCACAGAAACACTGATCAATGTCAGGAACAGGCATAATAATGTGGTCCCCACCATGGCACAGGGGGTGCTGGAGTACAAGGAGGCCTTTGGCGTGGATCCAGTGACCAATCAGAACGTCCAGTATTTTCTGGACCGCTTCTACATGAGCCGAATCTCCACACGCATGTTGATGAATCAGCACAcgTTAATCTTTGATGGCAGCACCAATCCAGCCCACCCCAAACACATTGGCAGTATCGACCCAAACTGTGACGTTGTAGAGGTCGTCAGAGATGCCTATGAAAGCTCCAAGATGCTGTGTGATCAGTACTACTTGACCTCTCCTGAAGTGGAAATCAAACAAGTGAACATTAAAGGACCCAGTGACCCTATACATATAGTTTATGTGCCTTCTCATCTCTACCACATGCTCTTTGAGCTTTTCAAGAATGCAATGAGAGCAACTGTGGAAACCCACGAGACCAGCCTTCATCTCCCACCAATCAAAGTGAGAGTTTCTCTAGGAACAGAAGATCTGACTATTAAGATGTCTGACAGAGGCAGTGGAGTTCCTTTGAGGAAAATTGAACGACTTTTTAGCTACATGTATTCAACTGCGCCGAGTCCTGTGGCTGAAGACACTCGCAATGCTCCCCTGgcTGGTTTTGGCTATGGTCTTCCTATCTCTCGTCTCTATGCTAAATACTTCCAGGGAGATCTGCAGCTCTACTCTATGGAGGGATATGGCACATCTGCAGTCATTTATCTAAAGGCCTTATCCACTGAATCAATAGAGAGGCTTCCTGTCTTCAACAAGTCAGCCTTAAGGCACTATCAAACCAGCACAGAAGCGGATGATTGGTGCATCCCGAGCAGCGAGCCCAAGAAACTAGGAAAGTATGAGTTCAGCGTTTGAGAAACTCATTAGATAAGCAGCATATGGACTGAACGCAGCTAGGAATGACCCATAGTGGAGGAGGCCTCGAGTTCATTTGGGTAACTATATATGTGACTCTTCAGGTATTTCAGAAGAATGGTGTAATCAAATGATTGATAATTGACTTGATGAATGTTACAGTCTAAACAACAAAACACCAAGGGCATTTTTGTCTTCCACGTTGCTTATAATACACCACACAAGCTTCATTTGCAGTGCTAACTCTTTCATTTAGAGTTTCTACGGGATAAAGTAAAGTACATTTCTTCCGAGACGTCAGAGACTTAAGTAGAGTTGTTGTTTGAGCATGTGTTGATTTCTACACATTACCACTGATTTTGAACTGATTCTGTAAGTGTGTTTCAGTGTATACGCAAACTTGTGTTTTAGTCTATGGGGCCAAGTTACCAGCTTTGTGTTGAGTTATAGCATGCACATATTTGGAAAAAGCAACCAAAAGTAGCCAAGGCTGTGTTTACGTCCTTGGTTGAAAATGCATTTGCAATGCAACCCTTAGAATGACCATAGTTGTGTGTGTATTGCTTGATTGTGAACTTGAAATGTTCCAGTAACCGTTGGACCTACTGTCTAACACTCCATTTCGTTTGAAATGTAAATGCATGTCCTTATCATTGAGGCCAAATCATTTCATCCACTTCTAAGAAGGGGttatatattgaatttaaaaacCCTTAATACTAGTGCCACCAGTGGTCATTAAGTGATCTGCAGCCAGCAACTAACTGAATTCTTGTATTAGCGTGCAtgtaaaatacaatagaatatatacagtagaagtcagaatgatgttaaaatttgtacatttttttccccaatatctgatTAAcgtagaagatttttttcaacacatttctaaacataactcatttctaataactggtttctttaactttgtcatgatgacagaatattttaacacatatgtttttaatatactagtattcggcttaaagtgacatttaaaagcttaactaggcaagtttgtgtaattgggcaagtcattgtatgaaagtggtttgttctgtagccagttgaaaataaaaactaaaaaataaataatactttttctagaagaaaaaaaaatcattggaaattatttaaaaattaaggtATGTCtgatagggttgggcga

Function

symbol description
pdk4 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK4 (pyruvate dehydrogenase kinase 4).

GO:

id name namespace
GO:1904183 negative regulation of pyruvate dehydrogenase activity biological_process
GO:0042593 glucose homeostasis biological_process
GO:0016310 phosphorylation biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-754 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK4 (pyruvate dehydrogenase kinase 4).

Ensembl:

ensembl_id ENSDARG00000054848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029531 False 1887 mRNA 0.39 7 41190258 41199944
TCONS_00029532 True 2612 mRNA 0.41 11 41190258 41213718

Neighbor

gene id symbol gene type direction distance location
XLOC_014983 sgce coding downstream 120557 41038668 ~ 41069701 (-)
XLOC_014981 NA coding downstream 204939 40909775 ~ 40985319 (-)
XLOC_014982 NA coding downstream 268066 40921152 ~ 40922192 (-)
XLOC_014980 bet1 coding downstream 284097 40899910 ~ 40906161 (-)
XLOC_014979 tfpi2 coding downstream 335152 40848109 ~ 40855106 (-)
XLOC_014985 slc25a13 coding upstream 76995 41290713 ~ 41371990 (-)
XLOC_014986 sem1 coding upstream 187415 41401133 ~ 41405315 (-)
XLOC_014987 NA coding upstream 231876 41445594 ~ 41468979 (-)
XLOC_014988 dlx5a coding upstream 256498 41470216 ~ 41472228 (-)
XLOC_014989 NA coding upstream 280059 41493777 ~ 41506484 (-)
XLOC_014711 CR382300.3 misc downstream 21461503 19728690 ~ 19728755 (-)
XLOC_014978 dre-mir-489 non-coding downstream 408987 40781168 ~ 40781271 (-)
XLOC_014976 CT027724.1 non-coding downstream 553567 40636572 ~ 40636691 (-)
XLOC_014975 NA non-coding downstream 861674 40323961 ~ 40328584 (-)
XLOC_014990 NA non-coding upstream 299024 41512742 ~ 41513258 (-)
XLOC_014992 NA non-coding upstream 509769 41723487 ~ 41730979 (-)
XLOC_014994 CU896644.2 non-coding upstream 959396 42173114 ~ 42173228 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02417068_02430580 PDK4 coding CI01000054 null 2417068 ~ 2431316 (+)
bowfin (Amia calva) AMCG00021539 pdk4,LOC107722149 misc CM030130.1 CM030130.1 20908817 ~ 20912002 (+)