XLOC_015003 (zgc:110239)


Basic Information

Item Value
gene id XLOC_015003
gene name zgc:110239
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42490936 ~ 42503143 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029559
CTTCTGCTGTTTTATAGGAACTTGGCGCGTGTGTGTCCTCCGTGGCGGAAACATTTCTAGATTGTCTTGTTTTCTTTCGGGACTTTCTATTGTGCAGATGAATGTTCGTCAGCATCTGTAGCGGTTGACTGTCTGGCTTCTTTAGACATGTGGTTTTTTCTAGCTGGATTCGTGCTTCTGTGTGCTGCAGATGCCACACCGGTTGCAGAGAGGACAGTTCCTGAGTTTGGAAAGACTTATCATGTCAAAGGTTTGCTTTCTTTGCCTTATGCTGAGATAAAGGAGCCATTTGAAGCTTGGTACGACCTGACGGGGAAAAGAAGTCGAATCGACTATTACCATGGTCAAGTTTGCACTTTCTTCATTGGAAATGACTTGGACTATGGTGCCGTTTACAAGATCACACCAGTCACCACTGAGACCGAATTCAATACTATGAAGTGTTTCCAGCTTAACGGCACCAAGGATGAACCAATAATTCCTCAGATAGCACTGCCTGATGTGCAAGGCTTTGAATTTGAGAAGATTGAATACTACGCAGGCGTTCTGTGCGAGGTCTGGAAAAATGTCACAACGGTTGGCCATAAGAAAAACACATACCGTCTGTGGGTCACCCGTCCAGAGGGAATAGATTCTTCAGCCATGCCGCACCACTATGAGATGATGGGCTTCAATACTCTTTTGGGCTCCCACTATGATAAATATATTGTCGATTACAGCGACTTCAGCTCTCAGGTTGATccaaacatttttaaactacCTGGAGgaatgTCCTGTGGTGGCTTTCCTGGTCCTGGTGTAGAGCATCATTTACTAGCCAATCCCATTCAAGATTTTGTAGAAACCTCCCCAGTTAGCCACGCCCACCGAATGTTTGGCCACTATAAGGAGAAGTTTAATCGTCAGTATGACAACGAGATGGAGCACGAGGAACGTGAGCACAACTTTGTGCATAATATTCGaTATGTGCACTCTATGAACAGAGCTGGCCTTTCATTCTCTCTCTCAGTCAACCACCTGGCCGATCGCTCTCAGAAAGAGCTGTCAATGATGAGAGGATGTCAAAGGACTCACAAGGTTCATAGAAAAGCCCAGCCTTTCCCCTCGGAAATCCGGTCTATAGCCACTCCAAACTCTGTAGACTGGAGACTCTACGGTGCTGTGACGCCAGTGAAAGACCAGGCTGTGTGTGGATCCTGCTGGAGCTTTGCCACCACTGGAACACTAGAGGGAGCACTTTTCCTGAAGACAGGACAGCTGACATCACTGTCCCAGCAGATGCTGGTGGACTGCACATGGGGATTTGGCAATAATGGTTGCGATGGAGGAGAGGAATGGAGAGCTTTTGAGTGGATCATGAAGCATGGTGGCATTTCTACAGCTGAGAGCTATGGAGCATACATGGGCATGAATGGTTTGTGTCATTACGATAAGACCTCCATGGTGGCTCAGTTGACTGGTTACACTAACGTGACCAGTGGTGATATTCTAGCACTGAAGGCTGCGATCTTTAAATTTGGGCCTGTAGCAGTGAGCATCGACGCTGCACACCGATCCTTCGCCTTCTACAGCAATGGAGTCTACTATGAACCAGAGTGCAAAAATGGGATAAATGACTTGGATCATGCGGTGCTGGCAGTCGGTTATGGGATAATGAACAACGAGTCCTACTGGTTAGTGAAGAACTCCTGGTCCTCTTACTGGGGCAATGATGGTTATATTCTGATGTCCATGAAAGACAACAACTGCGGTGTGGCTACTGATGCCATTTATGCCACATtagcctaaaacacacacacacacacacacacacacacacacacacacacacacacacctatcacAAGAGCCAAAAGAAGAATTACTTGTCAGTTTTATTGCAGATTTTGAATGCTGGACAGTTGATCACAGTTTTATTGTGTTTCTTTTTGAATGTCAATAAATGGAAATTCTTAATAACAAA

Function

symbol description
zgc:110239 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in several structures, including optic vesicle; pigment cell; retina; vasculature; and yolk syncytial layer.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-107 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in several structures, including optic vesicle; pigment cell; retina; vasculature; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000077664

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029559 True 1963 mRNA 0.46 11 42490936 42503143

Neighbor

gene id symbol gene type direction distance location
XLOC_015002 psmb4 coding downstream 28445 42456922 ~ 42462491 (-)
XLOC_015001 zgc:153441 coding downstream 66337 42418227 ~ 42424599 (-)
XLOC_015000 vps45 coding downstream 74240 42397287 ~ 42416696 (-)
XLOC_014999 plekho1a coding downstream 99546 42367286 ~ 42391390 (-)
XLOC_014998 si:ch211-191i18.2 coding downstream 199581 42263073 ~ 42291355 (-)
XLOC_015004 NA coding upstream 15434 42518577 ~ 42524909 (-)
XLOC_015005 zgc:123103 coding upstream 44556 42547699 ~ 42551338 (-)
XLOC_015006 si:dkey-267n13.1 coding upstream 49886 42553029 ~ 42557556 (-)
XLOC_015007 si:dkey-228a15.1 coding upstream 56000 42559143 ~ 42566559 (-)
XLOC_015008 zgc:103438 coding upstream 64396 42567539 ~ 42573297 (-)
XLOC_014711 CR382300.3 misc downstream 22762181 19728690 ~ 19728755 (-)
XLOC_014994 CU896644.2 non-coding downstream 317708 42173114 ~ 42173228 (-)
XLOC_014992 NA non-coding downstream 759957 41723487 ~ 41730979 (-)
XLOC_014990 NA non-coding downstream 977678 41512742 ~ 41513258 (-)
XLOC_014989 NA non-coding downstream 984452 41493777 ~ 41506484 (-)
XLOC_014987 NA non-coding downstream 1021957 41445594 ~ 41468979 (-)
XLOC_015011 CR749752.2 non-coding upstream 92125 42595268 ~ 42595384 (-)
XLOC_015013 BX324146.2 non-coding upstream 175221 42678364 ~ 42678480 (-)
XLOC_015014 NA non-coding upstream 182763 42685906 ~ 42688192 (-)
XLOC_015015 BX324146.1 non-coding upstream 339966 42843109 ~ 42845206 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010893 NA coding CM030133.1 CM030133.1 3442441 ~ 3450634 (-)