XLOC_015004


Basic Information

Item Value
gene id XLOC_015004
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42518577 ~ 42524909 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029797
atgaagagcacatcagctttcagattaatcagcgcacgtacggcccatgaagagcacatcagctttcagattaataagcgcacgtacggccacctgaccaaccagaggacccagggtccaactgaccagtcagagcacacaaggcaacctgaccgatcagagcaccctagctttgtaacatttagattttatacaccgtttctatttctgcgacacatgattagcttgcgtcgcatgttttggtgcacacttcacattttcgacttttttagagacatttcgattttagacaccgtttctaattagcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgattttttttgtgacatttctattttagacacggtttctatttttgcgacacatgtttagcttgcgtcgcatgttttgtgaaggcacattgtaaggcacttgaccagccagtgcacacagctgcctactgaccaatcagagcaccccaggccaaccggtcgatcaagagagcacatcagctttcagattaatcagcgcacgtacggcccatgaagagcacatcagctttcagattaataagcgcacgtacggccacctgaccaaccagaggacccagggtccaactgaccagtcagagcacacaaggcaacctgaccgatcagagcaccctagctttgtaacgtttagattttatacaccgtttctatttctgcgacacatgattagcttgcgtcgcatgttttggtgcacacttcatattttcgacttttttagagacatttcgattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgattttttttgtgacatttcgattttagacaccgtttctatttttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgattttttttgtgacatttctattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacattttttattttttttgtgacatttctattttagacacggtttctatttttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacaattttgatttttttgggacatttctattttagacacggtttctatttttgcgacacatgtttagcttgcgtcgcatgttttggtgcacacttcacattttcgacttttttagagacatttcgattttagacaccgtttctatttagcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacattttcgatttttttcgtgacatttctattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgatttttttgtgacatttctattttagacacggtttctatttttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgatttttttttgtgacatttctattttagacacggtttctatttttgcgacacttcacattttcgacttttttagagacatttcgattttagacaccgtttctatttagcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgattttttttgtgacatttctattttagacacggtttctatttttgcgacacatgtttagcttgcgtcgcatgttttgtgaaggcacggtgtaaggcacttgaccagccagtgcacacagctgcctactgaccaatcagagcaccccaggccaaccggtcgatcaagagagcacatcagctttcagattaatcagcgcacgtacggcccatgaagagcacatcagctttcagattaataagcgcacgtacggccacctgaccaaccagaggacccagggtccaactgaccagtcagagcacacaaggcaacctgaccgatcagagcaccctagctttgtaacgtttagattttatacaccgtttctatttctgcaacacatgattagcttgcgtcgcatgttttggtgcacacttcacatttttgactttttttagagacatttcgattttagacaccgtttctatttagcgacacatgtttagcttgtgtcgcatgttttgggtgcacttcacattttcgatttttttcgtgacatttctattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgatttttttcgtgacatttctattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacattttttattttttttgtcacatttctattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttggtgcacacttcacattttcgacttttttagagacatttcgattttagacaccgtttctatttagcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacattttcgatttttttcgtgacatttctattttagacacggtttctatatttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgattttttttgtgacatttctattttagacaccgtttctatttttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacttcacatttttgattttttttgtgacatttctattttagacaaggtttctatttttgcgacacatgtttagcttgcgtcgcatgttttgtgaaggcacggtgtaaggcacttgaccagccagtgcacacagctgcctactgaccaatcagagcaccccaggccaaccggtcgatcaagagagcacatcagctttcagattaatcagcgcacgtacggcccatgaagagcacatcagctttcagattaataagcgcacgtacggccacctgaccaaccagaggacccagggtccaactgaccagtcagagcacacaaggcaacctgaccgatcagagcaccctagctttgtgacatttctattttagaaaccgtttttatttttgcgacacatgtttagcttgtgtcgcatgttttgcgtgcacacttcacattttcgatttttttcgtgacatttcaattttagacaccgtttctatttctgcgacacatgattagcttgcgtcgcatgttttggtgcacacttcacattttcgatttttttcatgacatttttattttagacaccgtttctatttttgcggcacatgtttagcttgtgtcacaTGTTTTGCgcgcacttcacatttttgattttttccgtgacatttttattttagacaccgtttctatttagcgacacatgattaccttgtgtcgcatgttttgcgtgcacttcacattttcgatttttttcgtgacatttttattttagacaccgtttctatttttgcggcacatgtttagcttgtgtcgcatgttttgcgcgcacttcacattttcgatttttttcctgacatttcaattttagacaccgtttctatttctgtgaCACATGATTaccttgcgtcgcatgttttggtgcacacttcacattttcgatgtGAAGCTCGCGTCGCATGTTTTTTAAGGGCACAGTGTGAGGCACTCTACCaaccagtgcacacagctgcctttCGACCGATCAAGTGCACGTCAGCTACCTGCTCAGCGCAATCTGGTTGATGAACTCCAGGTGCTTCTCCTCCTCCAGCTATGCGATGCTCTGTTTGctcttctgcagtgtgtgttgggTGTTGTCCAGCTTTTACCGCAGCGACTGGTTCTGCCAACACGCTGATGATCTGACAACACACAGACATTTGCATTATGTATACATAAAAACTGCATTTCCAGtttaatggattttt

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0048857 neural nucleus development biological_process
GO:0048869 cellular developmental process biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0019207 kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029797 True 4017 lncRNA 0.41 2 42518577 42524909

Neighbor

gene id symbol gene type direction distance location
XLOC_015003 zgc:110239 coding downstream 15434 42490936 ~ 42503143 (-)
XLOC_015002 psmb4 coding downstream 56086 42456922 ~ 42462491 (-)
XLOC_015001 zgc:153441 coding downstream 93978 42418227 ~ 42424599 (-)
XLOC_015000 vps45 coding downstream 101881 42397287 ~ 42416696 (-)
XLOC_014999 plekho1a coding downstream 127187 42367286 ~ 42391390 (-)
XLOC_015005 zgc:123103 coding upstream 22790 42547699 ~ 42551338 (-)
XLOC_015006 si:dkey-267n13.1 coding upstream 28120 42553029 ~ 42557556 (-)
XLOC_015007 si:dkey-228a15.1 coding upstream 34234 42559143 ~ 42566559 (-)
XLOC_015008 zgc:103438 coding upstream 42630 42567539 ~ 42573297 (-)
XLOC_015009 sytl1 coding upstream 48815 42573724 ~ 42588510 (-)
XLOC_014711 CR382300.3 misc downstream 22789822 19728690 ~ 19728755 (-)
XLOC_014994 CU896644.2 non-coding downstream 345349 42173114 ~ 42173228 (-)
XLOC_014992 NA non-coding downstream 787598 41723487 ~ 41730979 (-)
XLOC_014990 NA non-coding downstream 1005319 41512742 ~ 41513258 (-)
XLOC_014989 NA non-coding downstream 1012093 41493777 ~ 41506484 (-)
XLOC_014987 NA non-coding downstream 1049598 41445594 ~ 41468979 (-)
XLOC_015011 CR749752.2 non-coding upstream 70359 42595268 ~ 42595384 (-)
XLOC_015013 BX324146.2 non-coding upstream 153455 42678364 ~ 42678480 (-)
XLOC_015014 NA non-coding upstream 160997 42685906 ~ 42688192 (-)
XLOC_015015 BX324146.1 non-coding upstream 318200 42843109 ~ 42845206 (-)
XLOC_015018 CU207343.2 non-coding upstream 437186 42962095 ~ 42983687 (-)

Expression


Co-expression Network