XLOC_015005 (zgc:123103)


Basic Information

Item Value
gene id XLOC_015005
gene name zgc:123103
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42547699 ~ 42551338 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029560
CCCTTTACGCCACACTGGACCCTGGTGTTATATAAAGTCAATGCGAATACAAGCTTCTGTCTATCTTCAGTGGATGTGTCTGGTTGCTGTAGACTACACAATGTGGATTTTTCTAGCTGGGTTTGTGGTTCTGGTGTGTGCTGCAGATGCCACACCAGTTCTTGGCAGAACATTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTGTGCTGTCTTTGCCTCATTCTAAGATAGAGGAGCCGTTTGAAGCTTGGTACGATCTTGATGGGAACAGAAGTCGCATTGACTATCGTAATAGCACAGTGCGCACCTTTCAGATTGGAAATGATTTGGATTTTGGTGCCATTTACAAGATCACACCAGTCATTCCTCCCAGTGTTATTAAGTGTTTCCAGCTTAAAGGAACTAAAGATGATCCAATAGAGCCACAGCAAGCAATCCCTGATGCGCAGAGCTTTGAAtttgAGAAAATGGAGGATTGCAAAGATGCTCAATGTGAGGTCTGGAAAAAAGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTGGAGAGGCAGCTTATTCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACTCTCTTCTGGGATCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCTTCCAAGACTATGTCAACACCCACCCTGTTAGCCACGCCCACCGGATGTTTGGCCCCTTTAAGGAGAAGTTTAATCGTCAGTATGAAAGTGAGAAGGAGCATGAGGAACGAGAGAACCTCTTCCTGCATACTTTCAGGTTTGTGCACTCCAACAACAGAGCTGGTCTTACATACAGTGTTGGTATCAATCACTTCGCAGACAAGACAAAGGAAGAGTTGGCCAGGATGACAGGAGGTTTACTTCCAAAAAAGGAGGAGGATGCAAAATAGTCCACAGAATAGTCCACCTGACAAAATAGTGGCAAACAATTAATTACAGTTTAATAAATGTCTCACTCAACAGATCTAAACAGTTATCTGATGAGAATTGcggtaatttaatattttctaaccATATAACTTGATTAAATTGATTCTGTATCTTCAAGCTTATTTGGCaaacaaatataattttcaaACCCAAATGTATATAAATTCTGATTAAACTATAAATGAAAACCACATGTTTTTCCCCCAATAAAACAAACACAGTTTTTGCTCA
>TCONS_00029561
AATGCGAATACAAGCTTCTGTCTATCTTCAGTGGATGTGTCTGGTTGCTGTAGACTACACAATGTGGATTTTTCTAGCTGGGTTTGTGGTTCTGGTGTGTGCTGCAGATGCCACACCAGTTCTTGGCAGAACATTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTATATTTCTGCCTTATATAGTTCACCCCAGTACAGTGCACTTCTTTTTCAGTGTTTTACGTGTATCTCTTTTATACAGGTGTGCTGTCTTTGCCTCATTCTAAGATAGAGGAGCCGTTTGAAGCTTGGTACGATCTTGATGGGAACAGAAGTCGCATTGACTATCGTAATAGCACAGTGCGCACCTTTCAGATTGGAAATGATTTGGATTTTGGTGCCATTTACAAGATCACACCAGTCATTCCTCCCAGTGTTATTAAGTGTTTCCAGCTTAAAGGAACTAAAGATGATCCAATAGAGCCACAGCAAGCAATCCCTGATGCGCAGAGCTTTGAAtttgAGAAAATGGAGGATTGCAAAGATGCTCAATGTGAGGTCTGGAAAAAAGTCACAGAGGCTGGCCATAAGAAGAACAC

Function

symbol description
zgc:123103 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-105 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver.

Ensembl:

ensembl_id ENSDARG00000099200

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029560 False 1313 mRNA 0.42 6 42547699 42551338
TCONS_00029561 True 583 lncRNA 0.42 3 42548653 42551299

Neighbor

gene id symbol gene type direction distance location
XLOC_015004 NA coding downstream 22790 42518577 ~ 42524909 (-)
XLOC_015003 zgc:110239 coding downstream 44556 42490936 ~ 42503143 (-)
XLOC_015002 psmb4 coding downstream 85208 42456922 ~ 42462491 (-)
XLOC_015001 zgc:153441 coding downstream 123100 42418227 ~ 42424599 (-)
XLOC_015000 vps45 coding downstream 131003 42397287 ~ 42416696 (-)
XLOC_015006 si:dkey-267n13.1 coding upstream 1691 42553029 ~ 42557556 (-)
XLOC_015007 si:dkey-228a15.1 coding upstream 7805 42559143 ~ 42566559 (-)
XLOC_015008 zgc:103438 coding upstream 16201 42567539 ~ 42573297 (-)
XLOC_015009 sytl1 coding upstream 22386 42573724 ~ 42588510 (-)
XLOC_015010 fkbp9 coding upstream 39812 42591150 ~ 42607451 (-)
XLOC_014711 CR382300.3 misc downstream 22818944 19728690 ~ 19728755 (-)
XLOC_014994 CU896644.2 non-coding downstream 374471 42173114 ~ 42173228 (-)
XLOC_014992 NA non-coding downstream 816720 41723487 ~ 41730979 (-)
XLOC_014990 NA non-coding downstream 1034441 41512742 ~ 41513258 (-)
XLOC_014989 NA non-coding downstream 1041215 41493777 ~ 41506484 (-)
XLOC_015011 CR749752.2 non-coding upstream 43930 42595268 ~ 42595384 (-)
XLOC_015013 BX324146.2 non-coding upstream 127026 42678364 ~ 42678480 (-)
XLOC_015014 NA non-coding upstream 134568 42685906 ~ 42688192 (-)
XLOC_015015 BX324146.1 non-coding upstream 291771 42843109 ~ 42845206 (-)
XLOC_015018 CU207343.2 non-coding upstream 410757 42962095 ~ 42983687 (-)

Expression


Co-expression Network