XLOC_015006 (si:dkey-267n13.1)


Basic Information

Item Value
gene id XLOC_015006
gene name si:dkey-267n13.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42553029 ~ 42557556 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029562
ACCCGGAATCAAAGTCATCTATCAGTTTCCAGACTCCCAGAAGGCTATAAATAGGACTTCGTGTCCACTTTCCTACTCTATAATAGATGTTGCGGTAGTTCTGACAGTGAAAGACGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAaATGATCCCTAAAGCTTTATAAGCAAATGCCCTGCAAAAatcaaacctaaaatcaactttACTGAGCTCAAGATGCTGTCACTGGGACGGTTCTATTTAAAAAGTTACACCATATTGGGGTTATTCTGGTACCTCAAAGACACATTAAAAGTCAAACCAGATGATGACAGGACAGTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTGTGATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGAGGAACAGAAGTCGAATCGACTACTATAATGGTACAGTGTGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTATCAAATCAGACCAGTCCTTCCTACCAATGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACAGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGGATGTTTGGCCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGAAGGAGCACGAGAAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACTAACAGAAAAGGTTTGTCATTCACCGTTGGTATCAATGACCGCGCCGATTGGTCAAGGGCAGAAACAAGAAAGTACTGTTAAAATGTCATTGTTGGTTATCTAAACTGACTGAAAAACTAGGTAAATGTTTTAtaggtaaattatatatatatatataatatcactaTTACGTGAAAAAAGTGACTTATGTATTATGTTGTGATAAAAATAAAGTGATAAATTGTGTA
>TCONS_00029563
TCCTACTCTATAATAGATGTTGCGGTAGTTCTGACAGTGAAAGACGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAaAAGTCAAACCAGATGATGACAGGACAGTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTGTGATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGAGGAACAGAAGTCGAATCGACTACTATAATGGTACCAAAGAGGAACCGATACAGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGGATGTTTGGCCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGAAGGAGCACGAGAAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACTAACAGAAAAGGTTTGTCATTCACCGTTGGTATCAATGACCGCGCCGATTGGTCAAGGGCAGAAACAAGAAAGTACTGTTAAAATGTCATTGTTGGTTATCTAAACTGACTG
>TCONS_00029564
ATGCTGTCACTGGGACGGTTCTATTTAAAAAGTTACACCATATTGGGGTTATTCTGGTACCTCAAAGACACATTAAAAGTCAAACCAGATGATGACAGGACAGTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTGTGATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGAGGAACAGAAGTCGAATCGACTACTATAATGGTACAGTGTGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTATCAAATCAGACCAGTCCTTCCTACCAATGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACAGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGGATGTTTGGCCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGAAGGAGCACGAGAAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACTAACAGAAAAGGTTTGTCATTCACCGTTGGTATCAATGACCGCGCCGATTGGTCAAGGGCAGAAACAAGAAAGTACTGTTAA
>TCONS_00029565
ATGGCGCAGAAGATGACAaAAGTCAAACCAGATGATGACAGGACAGTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTGTGATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGAGGAACAGAAGTCGAATCGACTACTATAATGGTACAGTGTGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTATCAAATCAGACCAGTCCTTCCTACCAATGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACAGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGGATGTTTGGCCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGAAGGAGCACGAGAAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACTAACAGAAAAGGTTTGTCATTCACCGTTGGTATCAATGACCGCGCCGATTGGTCAAGGGCAGAAACAAGAAAGTACTGTTAA
>TCONS_00029566
AATAGATGTTGCGGTAGTTCTGACAGTGAAAGACGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAaAAGTCAAACCAGATGATGACAGGACAGTTCCTGATTTTGGAAAGATGTATCATGTCAAAGGTGTGATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGAGGAACAGAAGTCGAATCGACTACTATAATGGTACAGTGTGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTATCAAATCAGACCAGTCCTTCCTACCAATGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACAGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGGATGTTTGGCCCCTTTAAGGAGAAGTTTAATCGACAGTATAAA
>TCONS_00029567
GACTACAAGGcaggatccaaatgcagatttattaGAATGTTCAGTCTGGAAAGGTTCAAACGGGGACAAACGGTAGCATGAAGATAATCCACAAGAGTAGTCGATAAAACAGGCGAATGGTCGAGGCATGcggcaaaacaaacaaataatataaacaaacaaaggtAAAAACACGGCTAGACtaaaaaagtaatgtgattttgttttgagAGATtgtgtgataataaaaatgtgcataatgGGATAGCATCaaatctttgtttgttttgtagtttgaGAAGATGGATTATCACAAAGGTTCACGGTGTGAGGTGTGGAAAACCGTCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCTGCACACAATCTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGGAGCATCAAATATTAGCCAATCCCATTCAAGACTAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-35 No description available

Ensembl:

ensembl_id ENSDARG00000035665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029562 False 1312 mRNA 0.41 8 42553029 42557556
TCONS_00029563 False 874 mRNA 0.44 7 42553145 42557486
TCONS_00029564 False 936 mRNA 0.44 7 42553175 42556086
TCONS_00029565 False 879 mRNA 0.44 7 42553175 42557416
TCONS_00029566 False 791 mRNA 0.44 6 42554346 42557475
TCONS_00029567 True 593 lncRNA 0.42 2 42554421 42555109

Neighbor

gene id symbol gene type direction distance location
XLOC_015005 zgc:123103 coding downstream 1691 42547699 ~ 42551338 (-)
XLOC_015004 NA coding downstream 28120 42518577 ~ 42524909 (-)
XLOC_015003 zgc:110239 coding downstream 49886 42490936 ~ 42503143 (-)
XLOC_015002 psmb4 coding downstream 90538 42456922 ~ 42462491 (-)
XLOC_015001 zgc:153441 coding downstream 128430 42418227 ~ 42424599 (-)
XLOC_015007 si:dkey-228a15.1 coding upstream 1587 42559143 ~ 42566559 (-)
XLOC_015008 zgc:103438 coding upstream 9983 42567539 ~ 42573297 (-)
XLOC_015009 sytl1 coding upstream 16168 42573724 ~ 42588510 (-)
XLOC_015010 fkbp9 coding upstream 33594 42591150 ~ 42607451 (-)
XLOC_015011 CR749752.2 coding upstream 37712 42595268 ~ 42595384 (-)
XLOC_014711 CR382300.3 misc downstream 22824274 19728690 ~ 19728755 (-)
XLOC_014994 CU896644.2 non-coding downstream 379801 42173114 ~ 42173228 (-)
XLOC_014992 NA non-coding downstream 822050 41723487 ~ 41730979 (-)
XLOC_014990 NA non-coding downstream 1039771 41512742 ~ 41513258 (-)
XLOC_014989 NA non-coding downstream 1046545 41493777 ~ 41506484 (-)
XLOC_015013 BX324146.2 non-coding upstream 120808 42678364 ~ 42678480 (-)
XLOC_015014 NA non-coding upstream 128350 42685906 ~ 42688192 (-)
XLOC_015015 BX324146.1 non-coding upstream 285553 42843109 ~ 42845206 (-)
XLOC_015018 CU207343.2 non-coding upstream 404539 42962095 ~ 42983687 (-)

Expression


Co-expression Network