XLOC_015007 (si:dkey-228a15.1)


Basic Information

Item Value
gene id XLOC_015007
gene name si:dkey-228a15.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42559143 ~ 42566559 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029568
GACAGTGAAGGAAGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAAATGTCAATCCAGCTGGTAACAGGACAGTTCCTGATTTTGGAAAGATGTATTATGTCAAAGGTGTAATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGGGGAACAGAAGTCGCATCGACTACTATAATGGTACAACGCGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTACCAAATCAAACCAGTCCTTCCTCCCAGCGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACGGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGTTTGAGAAGATGGAGGATTGCAAAGGTGCTCAGTGTGAGGTCTGGAAAACCATCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCAGCTCACAAACTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGCAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGAATGTTTGGTCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGGAGGAACACCAAGAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACGAACAGAAAAGGTCTGTCATTCACCGTGGGTATCAATAAACGAGCGGACTGGTCAAGAGCAGAAACAAGAAAGTCTAAAATTCCATTGGTTATCTAAGCTGTGACTGAAAACCTAGGTAAATAAATATCACTCTTAAGTGATATATGTATTATTAAGCTATTATgataaaaaataacacatttatttctACTAACTTATGAAACGTCAAGGTGttgttgtgtatatatacaaaAGATAAAGGGCATTTGGGTAAAATCACCAAAGAATAACAACAATGTCTGTTGCAAATCATGCTTTAAACTGGCTGTGCTATATTTAGAATGTCCACATTAATAATAACTAGAGCTGCATATAATACTGGAAAACTGTGCAATACTGTTTTTGAGTATTGCCATAATCATATTTCTTATTTAACATTTCGATAGAAAACATGCTATTTTTGTGAGCTATTAGCTATGAttataaatgatttgtttaatGACATTAAACTAAACATGTAATAGAAATAATTCAGATCTAATTATTCTAGTTTAGACTAAAAAACTGAgtcagggttagggttagtgcagCGGATATCCTGACTTtgactattgttgttgtttttattttttaattgattttgtcTCTGACTTACTcttgttgttttagttttgtgAAGCACATTGGTCAACTTGAGTTGTCTTTAATTGTGCTATATGAATAAACTGTCATTCATTAATTGTC
>TCONS_00029569
TCCAACTCTATAATAGACGTTGCGGTAGTTTTGACAGTGAAGGAAGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAAATGTCAATCCAGCTGGTAACAGGACAGTTCCTGATTTTGGAAAGATGTATTATGTCAAAGGTGTAATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGGGGAACAGAAGTCGCATCGACTACTATAATGGTACCAAAGAGGAACCGATACGGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGTTTGAGAAGATGGAGGATTGCAAAGGTGCTCAGTGTGAGGTCTGGAAAACCATCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCAGCTCACAAACTGAGCCTGATGTTTTCACTCCACCTGCAGGATTTACCTGTGAAGAGTTTCCTGATCCTCCTGAGCAGCATCAAATATTAGCCAATCCCATTCAAGACTATGTCAGCACCAACCCTGTTAGCCACGCCCACCGAATGTTTGGTCCCTTTAAGGAGAAGTTTAATCGACAGTATAAAAGCGAGGAGGAACACCAAGAGCGTGAAATCAACTTTGTACAATCTTTTAGGTTTGTGAACTCTACGAACAGAAAAGGTCTGTCATTCACCGTGGGTATCAATAAACGAGCGGACTGGTCAAGAGCAGAAACAAGAAAGTCTAAAATTCCATTGGTTATCTAAGCTG
>TCONS_00029570
AGACGTTGCGGTAGTTTTGACAGTGAAGGAAGCTTCAATTCTGATTACTGCAGAGGATGGCGCAGAAGATGACAAATGTCAATCCAGCTGGTAACAGGACAGTTCCTGATTTTGGAAAGATGTATTATGTCAAAGGTACACTACcagtcgatcccagttgtaagagtaacaaataatagcttgacttctagttaatcatttgaaaagtggcagaaggtggattttttcagatgaatcatctgttgaactgcatcccaatcatcacacatactgcagaagacctgttacctccacatcaaagttgctgaaagcaaagaaggtcaaagttctccaggattggccagctcagtcaccagaaatgaacattattgagcatgtcttgggtaagatggaggaggcattgaagatgaatccaaagaatcttgatgaactctgggagtcctgcaaGTGTAATTTCATTGCCTTCCTATGAGATAGAAGAACCTTTTGAAGCTTGGTACGACTTTGAGGGGAACAGAAGTCGCATCGACTACTATAATGGTACAACGCGCACATTTCTGATTGGAAATGACTTGGATTATGGGGCCATTTACCAAATCAAACCAGTCCTTCCTCCCAGCGATATTAAGTGTTTCCAGCTTAAAGGTACCAAAGAGGAACCGATACGGCCACAGTCAGCAATGCCTGATGTACAGGGATTTGAGTTTGAGAAGATGGAGGATTGCAAAGGTGCTCAGTGTGAGGTCTGGAAAACCATCACAGAGGCTGGCCATAAGAAGAACACATACCGTCTGTGGGTCACACGTCCAGAGGGAAATGATGCTCCAGCCACACCACACCGCTTTGAGATGGAGGGCTTCAACACTCTTCTAGATTCCCACAATGACAAATACAGCATTGAGTACAGTGACTTCAGCTCACAAACTGAGCCTGATGTTTTCACT

Function

symbol description
si:dkey-228a15.1 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in extracellular space and lysosome.

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-344 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDARG00000095698

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029568 False 1559 mRNA 0.38 7 42559143 42566527
TCONS_00029569 False 863 mRNA 0.44 7 42559766 42566559
TCONS_00029570 True 944 lncRNA 0.44 5 42560842 42566545

Neighbor

gene id symbol gene type direction distance location
XLOC_015006 si:dkey-267n13.1 coding downstream 1587 42553029 ~ 42557556 (-)
XLOC_015005 zgc:123103 coding downstream 7805 42547699 ~ 42551338 (-)
XLOC_015004 NA coding downstream 34234 42518577 ~ 42524909 (-)
XLOC_015003 zgc:110239 coding downstream 56000 42490936 ~ 42503143 (-)
XLOC_015002 psmb4 coding downstream 96652 42456922 ~ 42462491 (-)
XLOC_015008 zgc:103438 coding upstream 980 42567539 ~ 42573297 (-)
XLOC_015009 sytl1 coding upstream 7165 42573724 ~ 42588510 (-)
XLOC_015010 fkbp9 coding upstream 24591 42591150 ~ 42607451 (-)
XLOC_015011 CR749752.2 coding upstream 28709 42595268 ~ 42595384 (-)
XLOC_015012 susd5 coding upstream 62976 42629535 ~ 42651615 (-)
XLOC_014711 CR382300.3 misc downstream 22830388 19728690 ~ 19728755 (-)
XLOC_014994 CU896644.2 non-coding downstream 385915 42173114 ~ 42173228 (-)
XLOC_014992 NA non-coding downstream 828164 41723487 ~ 41730979 (-)
XLOC_014990 NA non-coding downstream 1045885 41512742 ~ 41513258 (-)
XLOC_014989 NA non-coding downstream 1052659 41493777 ~ 41506484 (-)
XLOC_015013 BX324146.2 non-coding upstream 111805 42678364 ~ 42678480 (-)
XLOC_015014 NA non-coding upstream 119347 42685906 ~ 42688192 (-)
XLOC_015015 BX324146.1 non-coding upstream 276550 42843109 ~ 42845206 (-)
XLOC_015018 CU207343.2 non-coding upstream 395536 42962095 ~ 42983687 (-)

Expression


Co-expression Network