XLOC_015009 (sytl1)


Basic Information

Item Value
gene id XLOC_015009
gene name sytl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 42573724 ~ 42588510 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029575
GGGTGTGAAAGTGCCAGTCCTGCCAAATCAGACACAAATGAGTGTCTGTTCACAAACTGACGACAACTAAACTTGGGAAAGAAACAAACACCGGAATaaactatgcagaagacattagATGAGGTGTGTCTGTAATGGAAAAGGAACCTGTACTAGATCTGTGTCACCTGACGGAGGTGGAGCAAACGGTAATCCTCAATGTTTTGCTGAGAGATGCTGAACTCCGCAGCCGAGAGGAAGGTAGAGTCCGAAAGCTTCAGCAGACGGTGTCAGACCCGGTGCATCTGCGCTCACTCTCTGGTGCCTGGTTTCACGAAGAACGTTCTAAGAGATACGAGAAAGGAGGAGCTGATGTTGTTCATGCTTCTTTACGCCGTAAGAGGCGAGGAAAAGATTTACCTCTGACGGCAATATTTGATAAAGGTAATAACTCTTCTCATGTACATGAGCAGCAAGAGGAAGACAGGAATGCAGAGAGAGATTTGCAGGGAAATATGAATGAAAGAGAGGACGATAAGCATCAGGAACAGAAGGAAAGCGGACAAGAAGATGGGGAAAGTCTCATTTCTAATGCCATCACTATACCACAATCCAGGACAAGAAACGTCACAAAGAGGAATGAAATATTAGGCAGTGGCTTTGAAGACAGTGTTGAAGAGTcagaaaacaaagaaagaagaaTTTTGCCAAGCACATCACCAACTCTTCAGATTGACTCAGAGGGAGACATTGACTCAGGAAGCACTGAAATAAACTATACTAGATTTGGCTCGGTTACCAGTTTGACTTCCCATCATATGATGAATGGCAGTCTGATGAGCCTGTACAGTGTGGGGGATTTTGGGGATGTTGTCGTATCAGGACGGATCCAGTTCTCACTGCAGTATGATGTCAGGACGGAGGAGCTTTATGTGCACATAATACGCTGCCAAGATCTTGCATCAGCACGCAAAAATCGATCAGATCCATATGTTAAAGTTTACCTTCTCCCCGACAACACTTCCCGTAGTAAGAAAAAGACTGCAGTGAGGAGGAAAACATTAAATCCAGTCTACGATGAAACCATGACgTACAAAGTGCGGCGACTGGACCTCCCGGCTCGCGTGTTGAGTATGTCAGTGTGGCACATGGAGAGAATGAGGAGAAACCTCTTCCTGGGAGAGCTGGAGGTCAGGCTGGGTCAGTGGGACTGGAGCCAGAACCAGCCGACCTGGCAAAACCTTCAGCCAAGAGTTCAGTTGAGTCCGGAAGCCATCATCAGCAGAGGAACCATTCTGTTCTCAATTAAGTTTGTACCTCCTGGTTCAGAGGGACGTGGAAATCCAGCGACTGGTGAACTCCATATTTGGTTGAGAGAGATTGTCGGTTTACTTCCCACAAAACGTGGCGCACCTAACACATATGTAAAAAGTGTGGTTTTACCAGATGAGAGTGGTGTCAGCGGTCAGCAGACTCGTGTGGTCCGTGGTTCTGTCAGCCCAGTGTTCAATCACACCATGGTTTATGACGGCTTTCAGTCCAGTGACCTCATTCAGGCCTGTGCAGAGATAACAGTCTGGAACCCACATCCCTCCGGCTGTCTGGGTGGAGTCCGCCTCAGCACTGGCTCAGGCTTAAGTTACGGTCAGTCTGTTTGCTGGATGGACTCGACAGAAGATGAGATCAATGTGTGGTCAAGTGTGATTCAGAGCCCCAACAGCTGGGTGGACACTAGTCTTCCCATCAGAACCAACCTACAGCTCTGCTCTGACTGACCTTTGCTGAACCTACTCCATGAATTTGCATCACATGACTTTAGATGTGTAAAGTTTCGAGTATGACCTGTTGTACTCTACATGATTTGTGCTCTACATTCTTTTTTATATCACTTGCAGTCTGAAATAACTAGTTGTCAGAGTTCAGACTTTCACAGAAAACACAGTCTTTTGTTTATAGCTTCCATCCATTATATGGATAACAAATATGTTTGAGATTTTGAGTTGATTTTAGAGTACAGGTCTCAacctggattcctggagggccgcagctctgtacagttttgctacaaccctaatcaaacacagctgatccaactaatcaaggtgttcaagactactagagactgtGATTTGGATGGGGTTAGAGCTGAAGGCCCtcctggaattgagtttgagactattGTTTTAGAGCATCATGATGTACATGTCAAAACTCACTCACTGCCATTCACCTTTTAATAATGTAGTAATCAGTACacagtctcagaaataaaggtacgtgagctgtcactggggtggtaccctttcaaaaggtacacatttgtacttaaagggtccacaTTGGTAACTCAGAGTGTATATTAGGatataaaaattttaagaggaacacttttgtactttttaggtactgatATGTACCCTTGAAGTGTTAATGCGGACCTTTTAGATACAAATTTGtaacttttaaaaaggtaccaccccagtgacagctcgcatacctttgtTTTTGAGAGGGTAGGACAGGAATGAGACTGTCGTCCagactttattttctattttgctTGGATTTGATGCAAAATATTCCTCACTCATTTGATATGTATTACATTTTGATGAACTGTGTTGTTGTTAGATTATATATTTTAGGAGTTGTTAAATTCTTAACCTGAGAAGTTCTTAAACTGTGAATTGTAATTGTCATTTTCATGAATgttttgaataattaaat

Function

symbol description
sytl1 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL1 (synaptotagmin like 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-439 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL1 (synaptotagmin like 1).

Ensembl:

ensembl_id ENSDARG00000070094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029575 True 2706 mRNA 0.43 15 42573724 42588510

Neighbor

gene id symbol gene type direction distance location
XLOC_015008 zgc:103438 coding downstream 427 42567539 ~ 42573297 (-)
XLOC_015007 si:dkey-228a15.1 coding downstream 7165 42559143 ~ 42566559 (-)
XLOC_015006 si:dkey-267n13.1 coding downstream 16168 42553029 ~ 42557556 (-)
XLOC_015005 zgc:123103 coding downstream 22386 42547699 ~ 42551338 (-)
XLOC_015004 NA coding downstream 48815 42518577 ~ 42524909 (-)
XLOC_015010 fkbp9 coding upstream 2640 42591150 ~ 42607451 (-)
XLOC_015011 CR749752.2 coding upstream 6758 42595268 ~ 42595384 (-)
XLOC_015012 susd5 coding upstream 41025 42629535 ~ 42651615 (-)
XLOC_015013 BX324146.2 coding upstream 89854 42678364 ~ 42678480 (-)
XLOC_015014 NA coding upstream 97396 42685906 ~ 42688192 (-)
XLOC_014711 CR382300.3 misc downstream 22844969 19728690 ~ 19728755 (-)
XLOC_014994 CU896644.2 non-coding downstream 400496 42173114 ~ 42173228 (-)
XLOC_014992 NA non-coding downstream 842745 41723487 ~ 41730979 (-)
XLOC_014990 NA non-coding downstream 1060466 41512742 ~ 41513258 (-)
XLOC_014989 NA non-coding downstream 1067240 41493777 ~ 41506484 (-)
XLOC_015015 BX324146.1 non-coding upstream 254599 42843109 ~ 42845206 (-)
XLOC_015018 CU207343.2 non-coding upstream 373585 42962095 ~ 42983687 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_01568746_01575755 SYTL1 coding CI01000054 null 1568746 ~ 1575755 (+)