XLOC_015022


Basic Information

Item Value
gene id XLOC_015022
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43250524 ~ 43251750 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030340
ATATAAAACTCCCAGACAATCACAAAACACTCCCAGGCATTCATAAACACTCTCAACCAATCATAAACACTCTCAATTAATCATGAAACgctctcagccaatcacagaACACTACCAGTCCATCATGAAGTACTCTCAGCCAATCACAAACATTCCCAGCCAATTACAAAACACTCCCGGCCAATAACAAACACTCCCAGCCAATCACAAAACACAGTCAAATACAGTCTCAGCCAATGATAGAATgctctcagccaatcacagaATACTACCAGTCAATCATGAAGTTCTCTCAGCCAATCACAAACACTCCCAGCCAATTACAAAACAGTCTCAGCCAATCGCAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCCCAGCCAATTACAAACCCTCCCAGCCAATGACAAACACTCCAAGCCAATGACAAACCCTTCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAAAACTCCAAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGCCAAACTCTCCCAGCCAATCAAATAACAGTTCAAGTCAATCACAAAAAAACTGCCAGCCAATCATATAAAACTCCCAGACAATCACAAAACACTCCCAGGCATTCATAAACACTCTCAACCAATCATAAACACTCTCAATTAATCATGAAACgctctcagccaatcacagaACACTACCAGTCCATCATGAAGTACTCTCAGCCAATCACAAACATTCCCAGCCAATTACAAAACACTCCCGGCCAATAACAAACACTCCCAGCCAATCACAA
>TCONS_00030339
ATATAAAACTCCCAGACAATCACAAAACACTCCCAGGCATTCATAAACACTCTCAACCAATCATAAACACTCTCAATTAATCATGAAACgctctcagccaatcacagaACACTACCAGTCCATCATGAAGTACTCTCAGCCAATCACAAACATTCCCAGCCAATTACAAAACACTCCCGGCCAATAACAAACACTCCCAGCCAATCACAAAACACAGTCAAATACAGTCTCAGCCAATGATAGAATgctctcagccaatcacagaATACTACCAGTCAATCATGAAGTTCTCTCAGCCAATCACAAACACTCCCAGCCAATTACAAAACAGTCTCAGCCAATCGCAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGACAAACACTCCCAGCCAATCACAAACCCTCCCAGCCAATGACAAACACTCCCAGCCAATCACAAACACTCTCAGCCAATGCCAAACTCTCCCAGCCAATCAAATAACAGTTCAAGTCAATCACAAAAAAACTGCCAGCCAATCATATAAAACTCCCAGACAATCACAAAACACTCCCAGGCATTCATAAACACTCTCAACCAATCATAAACACTCTCAATTAATCATGAAACgctctcagccaatcacagaACACTACCAGTCCATCATGAAGTACTCTCAGCCAATCACAAACATTCCCAGCCAATTACAAAACACTCCCGGCCAATAACAAACACTCCCAGCCAATCACAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030340 False 1016 lncRNA 0.44 2 43250524 43251750
TCONS_00030339 True 756 lncRNA 0.43 2 43250524 43251750

Neighbor

gene id symbol gene type direction distance location
XLOC_015021 gnrhr1 coding downstream 24400 43213527 ~ 43226124 (-)
XLOC_015020 CU207343.1 coding downstream 219636 43029382 ~ 43030888 (-)
XLOC_015019 zcchc17 coding downstream 246168 42996968 ~ 43004356 (-)
XLOC_015018 CU207343.2 coding downstream 266837 42962095 ~ 42983687 (-)
XLOC_015017 dclk3 coding downstream 304559 42938754 ~ 42945965 (-)
XLOC_015023 NA coding upstream 20491 43272241 ~ 43282798 (-)
XLOC_015024 NA coding upstream 178055 43429805 ~ 43542568 (-)
XLOC_015025 gpr186 coding upstream 295715 43547465 ~ 43552252 (-)
XLOC_015026 fam83hb coding upstream 360429 43612179 ~ 43639331 (-)
XLOC_015027 si:ch211-193k19.2 coding upstream 402488 43654238 ~ 43659779 (-)
XLOC_014711 CR382300.3 misc downstream 23521769 19728690 ~ 19728755 (-)
XLOC_015015 BX324146.1 non-coding downstream 405318 42843109 ~ 42845206 (-)
XLOC_015014 NA non-coding downstream 562332 42685906 ~ 42688192 (-)
XLOC_015013 BX324146.2 non-coding downstream 572044 42678364 ~ 42678480 (-)
XLOC_015028 NA non-coding upstream 453165 43704915 ~ 43711293 (-)
XLOC_015031 NA non-coding upstream 646190 43897940 ~ 43901052 (-)
XLOC_015035 NA non-coding upstream 1752051 45003801 ~ 45007057 (-)

Expression


Co-expression Network