XLOC_015024


Basic Information

Item Value
gene id XLOC_015024
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43429805 ~ 43542568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029589
CGAATCAAAGCTGGACCCACCCTGTATACTGACTTCCAGCCCATAATTACAACCTCTGACGATATGAAAATGGCACAGGCTTATTTTTCACAACcatttaaaagactttaaaaCTAAAAGCGAAGGCCTAAATTGAGTGAAGCGTTCAGGGCAGAGCAGGAAGTGATTAACGTTAGCTTTAGCAGACTGTCAACTCGCCAACCCAACTGCGGCCATTTCATTATTTACGCAAATAAAAGTGCCTTACCTGGATATACTTAAAGATTTGGCCTTAGATGCCGACGTTTTTCTGGCTTTTTAACTACCTCAGCAGTACCATTCCCTGAGTTTGGTGCCGTCCATAATTTTCTGAGCCGACAAAATGTCCACAAGTACTGTAAGAAGAGCTGTCTCGCATTTGGTAACTTTTCATTGGACGATGCGCGTTAATCCAAACATTTGATTGGCTGGTGCGCCTGTCAATCACCGAAAAATGGGCGGTTGCAGAAAGTGGAATCTTGAAGGCGCAGCTCCACCCTAGCGGCTTGAAAACATCTGTTCACAGTTTCTACACGGAAGGCAGGAATAATCAGCATTCCTGAGCCAGTCCCAACAAATCTGAAACATGGCGAAATTATGCATGGACCACCACAACATGTGATACAAGATAAAGGCTATTGGAGATGGAGCCTCACCCAAAACATAGAAAAGCATGTTTAGTAAGCGTGGAGACTCTAGACTGGAGGAATGAGTCACTGAGGAACTGCTGTGGGGGAGGCAGAGGCGGACAGTCAGACTCACTGACAAACAGAGTTCTCTCCGGGCTGGTACTGGGGCTCGGTGGCGGTGAAGTAATCCTCCAGGAAGCTCTGCAGATACTCGAATGTGTGCCTCTCATCGGGGTCTTTCCTCCAGCACTGAAGCATGAGCTCGTGCAGAGATGCCGGCGAGCCCTGCGGACACGGCATACGGTATCCGCGCTCCACCTGCTCCAGCACCTCTCGGTTGTTCATTCCTGTGCACAAACATTACACACAGAAGAAGTTTGAGtgTCAATGGCTAcctgtttccagcattcttcatcAAAATATCTCTATATTTGCatctttgagtgaactgtccctttaagcaattAACAGGGTTCCCACTCTTCCATAAAAGGAGATTCAAGGACTTCTTAAAGGATTATTCATTTCAAATCAAGCACCTTTTCAATTCACACTGCCAGCAAATACAGCATCATGAAAGTCCATGCTGCACTTAACAGTTCActtacacttcatatttacaTTGAAAGCAGCGATGATGATGTTTTGAATATGTCGTttaccaaaaatgttttaaa
>TCONS_00029798
CGAATCAAAGCTGGACCCACCCTGTATACTGACTTCCAGCCCATAATTACAACCTCTGACGATATGAAAATGGCACAGGCTTATTTTTCACAACcatttaaaagactttaaaaCTAAAAGCGAAGGCCTAAATTGAGTGAAGCGTTCAGGGCAGAGCAGGAAGTGATTAACGTTAGCTTTAGCAGACTGTCAACTCGCCAACCCAACTGCGGCCATTTCATTATTTACGCAAATAAAAGTGCCTTACCTGGATATACTTAAAGATTTGGCCTTAGATGCCGACGTTTTTCTGGCTTTTTAACTACCTCAGCAGTACCATTCCCTGAGTTTGGTGCCGTCCATAATTTTCTGAGCCGACAAAATGTCCACAAGTACTGTAAGAAGAGCTGTCTCGCATTTGGTAACTTTTCATTGGACGATGCGCGTTAATCCAAACATTTGATTGGCTGGTGCGCCTGTCAATCACCGAAAAATGGGCGGTTGCAGAAAGTGGAATCTTGAAGGCGCAGCTCCACCCTAGCGGCTTGAAAACATCTGTTCACAGTTTCTACACGGAAGGCAGGAATAATCAGCATTCCTGAGCCAGTCCCAACAAATCTGAAACATGGCGAAATTATGCATGGACCACCACAACATGTGATACAAGATAAAGGCTATTGGAGATGGAGCCTCACCCAAAACATAGAAAAGCATGTTTAGTAAGCGTGGAGACTCTAGACTGGAGGAATGAGTCACTGAGGAACTGCTGTGGGGGAGGCAGAGGCGGACAGTCAGACTCACTGACAAACAGAGTGAGAGACTCCACTTTGCACATTTTCAATGCTAATGTGTCATGGAGGGATCCCCGATTATTTTGCCAAGTCACTTTTTACATATGTTTTGCAGTCGCTCTATATAAAGCTAAAATTAAAGCTGCA
>TCONS_00030342
TTGCGTGTGAGCGTTTGTGCGTGCAAGCGTTTGTGCATGCAATTGTTTGTGCGTGCAAGCGTTTGTGCATAAACAAACACTTGCACGCACAAACGACTGCACGCACAAACgcttgcacgcacacacaaaatctCGCAGGCACAAACGCTTGCACGCACAAAAGCTTGCACGCACACAAAAACGCTCACTCCATGCACAAATGCCCGAACGCATGCACTCACACATATGCAAACGCTCGCACGCACAAATACTTGCACGCACCACACAAACACGCAACCACAAACTCTCACACAAAACACTTGCGCACACGTACAAACACACACTAGAACAGGATCTCAGTTTACCTTCGGCCACATTGTACAGAGCTCCATGCTCTCTGAAACCGGAGAAGgattaataactaaataattcACTCTCTCATTTAGATTAGGCCttccggacacacacacacacacacacacacacacacacacactttggcccGCTTCCTCTTATTTGCTTTTGGCCACACTGAAAGTAAACAGTAATATGAGAAGTGCGAGTCTAACAGGAATGATCTTGATGTGGTTGCACAGGTGATGAAGATGCTTCAGTCGGACCAGTCATCATCATCAAACTCAGACGAATCATCCTCAGAGTCGCTGCACTCCACGGCGATGCGGCGAGACAGAATGGCCGCCACATCATTACCATTGTGATCCCGCTTCTCCTGCTCTCGTTGCTCCTCCACTTTGCGCAGGCTATTGGAGATGGAGCCTCA
>TCONS_00029590
CTCGAGCACACACAAAACACTTGCGCACACAAGCACAAACGCAAGCACGCACAAACACTCGCACACAAACGCTCACGCACAAACGCTCGCACGCACAAAAGttcgcaaacacacacgcacaaatgcTTGCACGCAATCGGTTGTGCGTGCAAGCGCCCGAGCATTTGTGTGTGCAAGCGTTTTTGCCTGCAAGCGTTTGCGTGTGAGCGTTTGTGCGTGCAAGCGTTTGTGCATGCAATTGTTTGTGCGTGCAAGCGTTTGTGCATgtgtgtttga

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0043412 macromolecule modification biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000035657

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029589 False 1324 lncRNA 0.45 4 43429805 43524057
TCONS_00029798 False 917 lncRNA 0.44 2 43507870 43524057
TCONS_00030342 False 760 lncRNA 0.49 3 43508114 43542056
TCONS_00029590 True 276 mRNA 0.52 4 43517049 43542568

Neighbor

gene id symbol gene type direction distance location
XLOC_015023 NA coding downstream 147007 43272241 ~ 43282798 (-)
XLOC_015022 NA coding downstream 178055 43250524 ~ 43251750 (-)
XLOC_015021 gnrhr1 coding downstream 203681 43213527 ~ 43226124 (-)
XLOC_015020 CU207343.1 coding downstream 398917 43029382 ~ 43030888 (-)
XLOC_015019 zcchc17 coding downstream 425449 42996968 ~ 43004356 (-)
XLOC_015025 gpr186 coding upstream 4897 43547465 ~ 43552252 (-)
XLOC_015026 fam83hb coding upstream 69611 43612179 ~ 43639331 (-)
XLOC_015027 si:ch211-193k19.2 coding upstream 111670 43654238 ~ 43659779 (-)
XLOC_015028 NA coding upstream 162347 43704915 ~ 43711293 (-)
XLOC_015029 ppt1 coding upstream 193701 43736269 ~ 43757568 (-)
XLOC_014711 CR382300.3 misc downstream 23701050 19728690 ~ 19728755 (-)
XLOC_015018 CU207343.2 non-coding downstream 446118 42962095 ~ 42983687 (-)
XLOC_015015 BX324146.1 non-coding downstream 584599 42843109 ~ 42845206 (-)
XLOC_015031 NA non-coding upstream 355372 43897940 ~ 43901052 (-)
XLOC_015035 NA non-coding upstream 1461233 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 non-coding upstream 1614934 45157502 ~ 45244708 (-)
XLOC_015038 NA non-coding upstream 2146669 45689237 ~ 45690415 (-)

Expression


Co-expression Network