XLOC_015027 (si:ch211-193k19.2)


Basic Information

Item Value
gene id XLOC_015027
gene name si:ch211-193k19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43654238 ~ 43659779 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029594
AGATTAAAATTATTCTGTAATGGCAGCTGTAGCTGTTCTGCGAGTCCTTTTTGGTGACGAGTCTGACTCAAGAAAATTATCCCTAGCCTCTGGAATTCCAGCAACAGTGGAACAACTGCACACATCAGTAAAGACATTCTTTGGATTGCAACAGGATTTCCGTTTGCAATATATGGATGCTGACTTGAATGGTTTTGTGAACCTAACTTCAGTGTCTGAAATTGCTAACAAAAGCACATTGAGAGTAATATACTATCCTGTCTTGTCACCCGACTTATCTGGTGAGACCTCACTTACCAGTTGCCCAGATCCTCAAACTCCTGCTTCATCAATAGCCTCATCCAGCAGCaataatacactctatacatcAACCCCACATTCATCCCCAGAAACTCAGCCCTCAGGACTTTCTTCCTGGCCCAAAGTGTTTCAGATCCCTAAATTCACCTATGAGGCTGAATTTGAGCTGCAACAAAAAAATATAGAGTTTGAGACAAACGGCACATACTTCAACCCTGGTTTTAAGCTGAAAGGAATTCTCCTTGACGGCCTAGCCCAAGAAatgataaaatacacaaaatacccAAAAGACTATCAATGTGAAGAGGTAGCAGCAGCTCTGACAAGGGCACATCCTTGTTTGGGTCAGCTAGGTTCTAAAACAGGATTTTGGGGTTGGAAACAGTCTCTGAAgtacaaaatgcaaaactacagaACAAAGCTTGGGCGACTTGGACATCCTGAAATCCGTGTTAACTCATTGAAGCACAAAAGAGAAGGCCAAGGCAAATCTGCAGCCAACATCAAGAAACCAAGAAAAGCCGAAGTCAACTACATTCCTTTGCACCCAAAAGGGGAAACAACAGAAAGCTTGGAAAATGAAAGAATTTCTTTATTGTGTGAAGTGAAAAAGCGTGACAATGAAGCAGTCATAAAAGCAAAAATGGAAAAAACGTTCTCTCTCAGACGTCTTGAAATTGTGCAGCAGAGGCCAATGATAGAAGAGTTCAAAAACAGATGGCCTGCCCTGTTTGAAGAGAATGAAGTGAATGCAGAGTTCCTGCGAATCACCACTAAGCCACTACAATCAAAGTTCTTGTCACAGCTGGATCACTTCTCTGACAAGCTGATGCAGGTCTTCAAGAAGAAAGGAGGAATGAAGGGGCAAAGGATCAAGGATGTCCTGGCGATTAATGATGTGTGTGATGACATCAACACCAGAAGGGAGTGCATTCTGAGAAGCCTTGTCATTTACCTCAATGAAGATCCTGATTCATTCTTCAAGGCAAATTTGGCCTCTGGCACTGATGATGTGGAGAGGGGCATCTCAAGCACAGTCATGGGGATTTACATAATCAGAAGTTATGACAACGGGAAGCCACAGGATGTGGGAATTGTGATCGAAGGCATTAAAGTTCTGACCAACGTTGGCAGTGTCATCATGGGTTTTGTTGTGCTGTTTGGGCTCATTTATGCCCTTGATCTGAGATTTCCAGAAAACCTCAAGTACACCTTTGAGTTCATCCAGAAAATCATAATGAATCTGGATGGACACAAGCTCAATCCAAAGATACAGCAGCTGaaaatcaaattgttttcttAAAGTGAACACCAGATGACAAATAAATGAAGTTTCTTTACGCTTTTCGTATTTGGGATTCATTTGTCTTTTCAATCTTCTGCCATCTTTCATCTACTAAACCAACAACACTGAACTCATGGATGTTTTCCATGTGACATTTTACATTGTGGCTAAGCTACAAAAAGGAAGCATGtggacaagtaaaaaaaaaaaaaaaattggacatacaaatgcaaaataatgtttttatcatAAATGTTTTCTATGCAGCCAGGGTGATGGAGTGACTTGGTGTGATAATTGATACCCCTTACAAACTAATGGTTGATGAGGTTTTAAGTTTGGATTTCCCAatgcaactttttttatttatttatttattattttttgggaTGCCAACATCTGCACATCATAGCTTATTCATGTACAGTATAGTGTCAACAACTGTCTCCATTACTCTCGTACCTGTCAGGTAATTACTTGACGCAACACTTGTTAAAATGAACTTGACctaatgctttgttttgttttgtttttttctgaatttttgaCGTTCAGATTATTGAATTATGACTGGCCAGAGCAAGTCACATGTTCAGAAATTGTTCTAGTTTTGGTGACAATGGGTCTCCTTGTTATCAAACTGTCTTGGTATGTTTTCACCTTCCTATAGTCCAAATTTGGTCCCCAcagcctttttttttgtttgaattgaCCATTTGTACTACACAGATTAAAAATGCTGTACCTCTCGAGTAGCCAGGcatttttcatattattgttcTCAGGTTATGCCCTTTTAAGAAACGTTACAAAGTTTGCTGCttcacattttattaaatgtgcTCTGTTTTAggtataatttcatttatttatttgtgcatcttTAACATACAAGACTGTTTTTATATCTTCTGGTTTTAAGGTCTGACAGATACTAAAAACTGTCTGTTACAATTCAAATTAGTCAAGTAAAACAAGCACTAGTTTCAGCCTCTATTGTTCAAcgt
>TCONS_00029595
CTGCATTGCGTTTCTCCGTCCACCATCCACCTGTGGCCTGCAGACGAGTTGATGAGACGCTCCCGATTACAAGAAGTCATTTCTTTGGCCTCTGGCACTGATGATGTGGAGAGGGGCATCTCAAGCACAGTCATGGGGATTTACATAATCAGAAGTTATGACAACGGGAAGCCACAGGATGTGGGAATTGTGATCGAAGGCATTAAAGTTCTGACCAACGTTGGCAGTGTCATCATGGGTTTTGTTGTGCTGTTTGGGCTCATTTATGCCCTTGATCTGAGATTTCCAGAAAACCTCAAGTACACCTTTGAGTTCATCCAGAAAATCATAATGAATCTGGATGGACACAAGCTCAATCCAAAGATACAGCAGCTGaaaatcaaattgttttcttAAAGTGAACACCAGATGACAAATAAATGAAGTTTCTTTACGCTTTTCGTATTTGGGATTCATTTGTCTTTTCAATCTTCTGCCATCTTTCATCTACTAAACCAACAACACTGAACTCATGGATGTTTTCCATGTGACATTTTACATTGTGGCTAAGCTACAAAAAGGAAGCATGtggacaagtaaaaaaaaaaaaaaaattggacatacaaatgcaaaataatgtttttatcatAAATGTTTTCTATGCAGCCAGGGTGATGGAGTGACTTGGTGTGATAATTGATACCCCTTACAAACTAATGGTTGATGAGGTTTTAAGTTTGGATTTCCCAatgcaactttttttatttatttatttattattttttgggaTGCCAACATCTGCACATCATAGCTTAT

Function

symbol description
si:ch211-193k19.2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-203 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

Ensembl:

ensembl_id ENSDARG00000077572

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029594 False 2592 mRNA 0.39 4 43654238 43657468
TCONS_00029595 True 795 mRNA 0.38 2 43654828 43659779

Neighbor

gene id symbol gene type direction distance location
XLOC_015026 fam83hb coding downstream 14907 43612179 ~ 43639331 (-)
XLOC_015025 gpr186 coding downstream 101986 43547465 ~ 43552252 (-)
XLOC_015024 NA coding downstream 111670 43429805 ~ 43542568 (-)
XLOC_015023 NA coding downstream 371440 43272241 ~ 43282798 (-)
XLOC_015022 NA coding downstream 402488 43250524 ~ 43251750 (-)
XLOC_015028 NA coding upstream 45136 43704915 ~ 43711293 (-)
XLOC_015029 ppt1 coding upstream 76490 43736269 ~ 43757568 (-)
XLOC_015030 klhl43 coding upstream 131153 43790932 ~ 43819610 (-)
XLOC_015031 NA coding upstream 238161 43897940 ~ 43901052 (-)
XLOC_015032 uqcrb coding upstream 389722 44049501 ~ 44065581 (-)
XLOC_014711 CR382300.3 misc downstream 23925483 19728690 ~ 19728755 (-)
XLOC_015020 CU207343.1 non-coding downstream 623350 43029382 ~ 43030888 (-)
XLOC_015018 CU207343.2 non-coding downstream 670551 42962095 ~ 42983687 (-)
XLOC_015035 NA non-coding upstream 1344022 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 non-coding upstream 1497723 45157502 ~ 45244708 (-)
XLOC_015038 NA non-coding upstream 2029458 45689237 ~ 45690415 (-)

Expression


Co-expression Network