XLOC_015029 (ppt1)


Basic Information

Item Value
gene id XLOC_015029
gene name ppt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43736269 ~ 43757568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029596
ATTGAGATTGAATAATGGCTCCATCGGCTGCTTTTCGTCTGTTGTCTGTCTCTGGATGTCTGCTGTTATTGTGTGGCACATCATGGGCATCTAATGGCACAGTTCCTCTGGTGATTTGGCATGGGATGGgtgaCAGCTGTTGTAATCCTCTGAGTATGGGTGCAATAAAGAAGATGGTGGAGCAGGAAGTCTCAGGAATATATGTGCTTTCCCTCATGATCGGCAAATCTGTTTTTGAGgaCACTGAAAATGGCTTCCTAATGGATGTTAATAAGCAGGTGTCTTTCGTTTGTGACCAACTGGCCAAAGATCCCAAACTAAAGGAAGGCTACAATGCAATGGGCTTTTCACAGGGCGCACAGTTTCTGCGAGCGGTGGCACAGCGCTGTCCAGATCCGCCAATGAGGAACCTCATCTCTGTTGGTGGACAACATCAAGGAGTGTATGGTCTTCCTCGGTGTCCTGGCGAAAGCTCTCATATCTGCGACTGGATCCGCAAGCAGCTCAACTCAGGCGCTTATACAGACGCAGTTCAGAAACACTTAGTTCAGGCGCAATACTGGCACGATCCTCTCAATGACGACCTGTATAAAAAATACAGCCTCTTCCTTGCTGACATCAATCAGGAGCGGGTGGTGAATGAGACGTACAAGAAGAATCTGATGTCTCTGAATAAGTTTGTGATGGTGAAGTTCCTGCAGGACTCCATCGTTGATCCTGTGGACTCTGAGTGGTTTGGCTTTTATAAAGCTGGTCAAGCTGAAGAACTGGAAACACTGCAAGAAAGCCCCATATACAAAGAGGATCGTCTGGGTTTGGCAGCGATGGATTCAGCAGGGAAGCTTGTGTTTCTGGCCTCTGAAGGAGATCATCTGCAGTTCACCCGAGAGTGGTTTAATGAGAATCTGCTGTCCTACTTGCTCTGAAAACACACTTGCTTATTCCCAATAAGAGTTTACACGCAAACGCGCGCACAGTGCTTTTATTTTCTGATTTCAGCATGTTCGTAACTATCGTCTCAGATACATATGCGATGACTTGTATAGAAATGAAGCCAGTCTTGCTTGTTTTATTGCACTGatcttttatttgatttaatggaACCAAGAAATCAGGTTTACCTTGACATTTAGGTTTTAATTATACTAATTACGTACTCTTTTTAGGTCATTTTTGTTAGGCAATAAAAATACAGCGTACAAACCCTGTGGCCTGTGTTGTCATTCACCAAAagaaacaattattatttaaagagGTTAATTTTGAAGTCAATAATAAAGATCCTTTCAttcaagtatatttatttataggcgTTATGGTGGTgcggtgggtagcacgatcacctcacagcaagaaggtcgctggtttgaaccccggctgggccagttggcatttctgtgtggcgtttgcagtTCCTTCGGATGCTCCTGTtatcctcacagtccaaacacatgcgctataggtgaattagataagctaaattgtcggtgggcgaagcagtggtgcagtaggtagcctcacagcaagaaggtcactgggtcgagcctcggctcagttggcgtttctgtgtggagtttgcatgttcttcctgcgttcatgtgggtttcctccgggtgctccggtttcccccacagtcctaagacatgcggtacaggtgaatcgggttggctaaattgcccgtagtgtatgagtgtgtatgtgaatgaatgtgtggatgtttcccagtactgagttgcagctgaaagggcatgtgctgcataaaatataagctggataagatggcggttcattctgcggtggtgacccctgattaataaaggtactatgccgaaaagaaaatgaatgaatgaatatatatttttaatttaacgcTGTGTTGGCAACAATGGCCGTATTTCTTGCAAACCAATCAAATTCCttgtattaaaaaaatcttttttttttttttaaccagagatgtgattttgttttaatactATATATACCATGTTAAATTTTTAACCACTGAATATGTGCAAGTGAACTTGAACACTGAAGTAAGGTACACTGAAAATTCCTTCTCGAatattatatgtaatttttttaaataatacggacaattttttaatataaagagatatacattttaaataagtaattaaggagtttaattaagtttttttttatctgtgttaagaatgaatgaaatttagaCAAAATTATAATAACGCGAGACCGTTAGTGTTGTGTAAAAGGGCACCTACTTTACatctacagcacaggtgtcaaactcagttccaaaagggcggcagctctgcacagtttagttgcaaccctaattaaacacacctgatcaaactaattgagtccttcaggctagtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccaggaattgagtttgacacccctgatctacaaGATATAAGATACGATTTTTGGTGTCTCCAGGATTCCAATgtttaaagtttcagctcaaaattcaGCTCAGACTATTTATTATAGCCCCCAGAATCTGACCATTTTGGTGTCTTGAGTTTATAATCagataatcagttaagataaaataatgtataaactaTATTACATGTTGTTTCAATGATTAACTATagtaattcattttaatgtgacacaatattgtatgcttttttttttttttttgcttttttgacaACAAAGCGATTTTAAGcaagtatgataatattaagatccTGAATTAGTTTATCACACTTAGAcggtctattatgttttcttcCAGTCGCAACCCCATCTCAtaaaatacagacaatttagcctacccaattcacctgtaccgcatgtctttggactatgggggaaaccggagcaccagggagaacatgcaaactccacacaaaaacgccaactgacccagccgaggttcgaacctgcgacccagtgaccttctagctgtgaggcgacagcactacctactgcactgaattttaaatttattttctattaagTGATGAAGCAAATCTTGTATGATTTTCTATAAGTGCAGCGTTAGATTTTAACCACAGTGTTtgtaaaaattaactttaaaagcGAATAGTCAGTCTTAAATATTACAGGTGGCATTTTAAAATATGGACtgctgtatttttaataatgaaataacgtgaaatgttttcacagaataaattTGACCTGTTATAGCTTGAAAATAAAtgcaagttttaaaaatgtaatgcactAAAAAGCATAAGAAATGCATTAAACTGTGCTGTACAATGCATCAAAATGCTATTAATACATGTACAGCTTGTgccatttaataattcattaatatacattaataatatttacaagAGTGTGCAATTTAATGCGTCATTGCAAAATTAGATAGAATAAATCACGTCAAAGACTCAGAAGAAGTGATGTTATTTATTGCAACAATTAGAATGGTGCTTGATCTCCAGTACTAATTCTCGgccaaataaaagcaaataaatcaaAAAGACAAATGATACAAAAGAAACGCCCTCCTCATGGCCTCAACATGATGTCAAGTACAGATTAAGAGTCTGGAATTAAAGCCTAAACTAGTCTAAGCATGGGCAAGAGGTGGACACGAGCCATGTAAAGCCAGAATCTGTACAGCAGACGGTCAGACATGAACAGTACCACAAGCCCAGTTCGAGCCCAAAAAGATGATGTTATCCATCATAACCACGGaatgctcatttatttatttatacagggaatGTGCATGTGCTCTGGAATACGATGAAGAAAAGAGAGAACTCCTAAAGCAACCGCATGTTGATTCAGTGTCATGATTGTAAAATAGTCGCCAATTCCTCCTCTAGATTTGACACAAATCTTCATTCTAATTATCCctagaaaaaaaactattgtaataaaaaataaagaagaattGCAGtaaatgtctgcattggtgttttgaAGAGGGATGTTTGTGTGCTTCAGATCTCAATTGCATATGCTAAACCGAAAATAAATGCAGTGATCCCCTAAAACACACACCACCTGAccataaaaaaaagcaaaacaattataaaaaagatgaaaaacagagagagagagagacagaaaaggCTAAAGAAAGAGGAAGAAAAGCTGCACAAAAAGggtaaaaaagcaaaataaatatgcacaaaaaagagggaaaagctgaaaaaaaaacgaggggaaaaaagcaaaaaaaaaatacttaagaaaaaataaagaaaatgggggaaaaactGGGGGCtgtgagcaaaaaaataaaaaattattaagctttgcaaaaaacaaaacttaaataaaaaaaattacggggaaaaacaccaaaaaaatttaagaaaaaaaaaaaaaaaaaaagagtaaagaaaacgcaaaaaaaaaaccaaacaaaaaaaaaaacgggaaagcaaaaaaaaaaaaaaaaaaaatctagggaaaaagaaagaaaaaaaaaaggggggggcaAAAAACTAAACGTaagaaaaaaaggggaaaaaatcattagaaaaaatatataaataaaaagcaaaaaaaaaaaaaaaaaaacgaggtaaagaaaaaaattcttaggaaaaaaacaaaaaggggAAAAAGcttaacaaaaaaagcaaaaaaaaaaaaaaaaaaaaaatctttgggggaaaaaaagaaaaagggaaaaaataagcACAAAACAAATCTAAAGGCTAAAGATAAAGCaaaaaaagaggggaaaaaaaagcaaaaagacatgcacaaaaaaggaaagaaagttGGGGGGGACGCAAAATCAGCATAAAACAAAAGCATGACTTGCTTCCTCATGTTGGCCGTTCacatgttattttgtttattatggcTGCAAGACATCAAAACGAACATATGAAAACACGTCAACGGTTGGCATTGGTTTTCAAGTGCTAATGTTTGAATGGAGAGAGCGTTCAGCCTGCTGTAGCCGCTGTGATTGGCTACTCGGAGAGTTGACCTGTTGGCATGGACTTGTACAGTGTAGTTTAAGCTGGTCGGTCAGTCAGGTTGGACACTGCATGGGAGGGGGTGGGGGTTCACACAGCGGCTCTTTATCCAGCGATCTCGGTGGCTGTGGTGACCAGTTTACTGCCATCCCATACGGTTTTGAACTGTTCAGGGACTGGGATCTCAGTCTGGAGAGAAACAGAAGCATGAGCAATTATATACGGTCACAGTATTTAGTGCAATATCATACTTTTTCACACATTATGGTTCATTAAAAAAAGCTTGAGTTGACCTCGGATTAATTTGAGAAACAATTAAATATCGGTTAAAACTGGTTTCACttgtatataataaaattaagtaaattaaatatatatgctaATATAATATGTATTACAATATGCATGTTAATTGTGATtaaatcgcatccaaaataaaaaaattatatgcattttttaatatgtatacGTGTATTTGTAACAGATATTTAAACATATAACATGTGTATATGATACAagttatatattttgtgttatttatttattttggggtttttatatatatatttttaggtattttagtttttttatttatatttagataaaacgtgtatataaaaattttatgtctaaatataaattaaaaaacaac
>TCONS_00029597
tagaGTGGGACCAAATACTATCTAAACTGGCTAcattttactcagaggattttgctgtgtaataCGATAATCTCTAATGTGTCAAAAAACAAGCACATTTGGTTTCTCAGTTTATGACCCCTTTAAAGTACCCATAAGATTAGACACTAACCTCCCCGAAACCCTCCAGTGCACGCAGGGCAAACAGCCACTTAGCTCCGAGTTGAGCTGACAGCGGGGTGAGGAGCGTGAGGAGAGCCGTTCCCAGCACACCTCCACCCAGAAACAGGCTTCCTCCAAAGCGACCTGATAAATAACCTCCTGGGATCTGAGTAAACAGGTATCCAAAAAAGAAAGCACCAAGAAGCATTCCCTGTGTCTCTGAATTCCACGGGTATCTCGGAATCTGGGAACAGAAAATTAAAGGATTGAGATTGAATAATGGCTCCATCGGCTGCTTTTCGTCTGTTGTCTGTCTCTGGATGTCTGCTGTTATTGTGTGGCACATCATGGGCATCTAATGGCACAGTTCCTCTGGTGATTTGGCATGGGATGGgtgaCAGCTGTTGTAATCCTCTGAGTATGGGTGCAATAAAGAAGATGGTGGAGCAGGAAGTCTCAGGAATATATGTGCTTTCCCTCATGATCGGCAAATCTGTTTTTGAGgaCACTGAAAATGGCTTCCTAATGGATGTTAATAAGCAGGTGTCTTTCGTTTGTGACCAACTGGCCAAAGATCCCAAACTAAAGGAAGGCTACAATGCAATGGGCTTTTCACAGGGCGCACAGTTTCTGCGAGCGGTGGCACAGCGCTGTCCAGATCCGCCAATGAGGAACCTCATCTCTGTTGGTGGACAACATCAAGGAGTGTATGGTCTTCCTCGGTGTCCTGGCGAAAGCTCTCATATCTGCGACTGGATCCGCAAGCAGCTCAACTCAGGCGCTTATACAGACGCAGTTCAGAAACACTTAGTTCAGGCGCAATACTGGCACGATCCTCTCAATGACGACCTGTATAAAAAATACAGCCTCTTCCTTGCTGACATCAATCAGGAGCGGGTGGTGAATGAGACGTACAAGAAGAATCTGATGTCTCTGAATAAGTTTGTGATGGTGAAGTTCCTGCAGGACTCCATCGTTGATCCTGTGGACTCTGAGTGGTTTGGCTTTTATAAAGCTGGTCAAGCTGAAGAACTGGAAACACTGCAAGAAAGCCCCATATACAAAGAGGATCGTCTGGGTTTGGCAGCGATGGATTCAGCAGGGAAGCTTGTGTTTCTGGCCTCTGAAGGAGATCATCTGCAGTTCACCCGAGAGTGGTTTAATGAGAATCTGCTGTCCTACTTGCTCTGAAAACACACTTGCTTATTCCCAATAAGAGTTTACACGCAAACGCGCGCACAGTGCTTTTATTTTCTGATTTCAGCATGTTCGTAACTATCGTCTCAGATACATATGCGATGACTTGTATAGAAATGAAGCCAGTCTTGCTTGTTTTATTGCACTGatcttttatttgatttaatggaACCAAGAAATCAGGTTTACCTTGACATTTAGGTTTTAATTATACTAATTACGTACTCTTTTTAGGTCATTTTTGTTAGGCAATAAAAATACAGCGTACAAA
>TCONS_00029598
GCGAGCGGTGGCACAGCGCTGTCCAGATCCGCCAATGAGGAACCTCATCTCTGTTGGTGGACAACATCAAGGAGTGTATGGTCTTCCTCGGTGTCCTGGCGAAAGCTCTCATATCTGCGACTGGATCCGCAAGCAGCTCAACTCAGGCGCTTATACAGACGCAGTTCAGAAACACTTAGTTCAGGCGCAATACTGGCACGATCCTCTCAATGACGACCTGTATAAAAAATACAGCCTCTTCCTTGCTGACATCAATCAGGAGCGGGTGGTGAATGAGACGTACAAGAAGAATCTGATGTCTCTGAATAAGTTTGTGATGGTGAAGTTCCTGCAGGACTCCATCGTTGATCCTGTGGACTCTGAGGTGAAATCTGAACTCTCTCTTTACTGAATTAGAAAAGCCGGAACTCTTTCTAACTGGATTGTCTTTGACAGTGGTTTGGCTTTTATAAAGCTGGTCAAGCTGAAGAACTGGAAACACTGCAAGAAAGCCCCATATACAAAGAGGATCGTCTGGGTTTGGCAGCGATGGATTCAGCAGGGAAGCTTGTGTTTCTGGCCTCTGAAGGAGATCATCTGCAGTTCACCCGAGAGTGGTTTAATGAGAATCTGCTGTCCTACTTGCTCTGAAAACACACTTGCTTATTCCCAATAAGAGTTTACACGCAAACGCGCGCACAGTGCTTTTATTTTCTGATTTCAGCATGTTCGTAACTATCGTCTCAGATACATATGCGATGACTTGTATAGAAATGAAGCCAGTCTTGCTTGTTTTATTGCACTGatcttttatttgatttaatggaACCAAGAAATCAGGTTTACCTTGACATTTAGGTTTTAATTATACTAATTACGTACTCTTTTTAGGTCATTTTTGTTAGGCAATAAAAATACAGCGTAC
>TCONS_00029599
GTTGAGTGTTTTGCTAGCTATTCTTAGCATCGCAACATCGACGTTTCCGGGTGCAAATGTTGGAGATAGGAAGTGATAAGAGACGCGTATTGTTATGTAGCAGTGAATCAGGGTTTTTAAATAAGTTTGTGCACCATAAGAAGCTGCGTTTGACATTTAAAAGTGAAGATTGAGATTGAATAATGGCTCCATCGGCTGCTTTTCGTCTGTTGTCTGTCTCTGGATGTCTGCTGTTATTGTGTGGCACATCATGGGCATCTAATGGCACAGTTCCTCTGGTGATTTGGCATGGGATGGgtgaCAGCTGTTGTAATCCTCTGAGTATGGGTGCAATAAAGAAGATGGTGGAGCAGGAAGTCTCAGGAATATATGTGCTTTCCCTCATGATCGGCAAATCTGTTTTTGAGgaCACTGAAAATGGCTTCCTAATGGATGTTAATAAGCAGGTGTCTTTCGTTTGTGACCAACTGGCCAAAGATCCCAAACTAAAGGAAGGCTACAATGCAATGGGCTTTTCACAGGGCGCACAGTTTCTGCGAGCGGTGGCACAGCGCTGTCCAGATCCGCCAATGAGGAACCTCATCTCTGTTGGTGGACAACATCAAGGAGTGTATGGTCTTCCTCGGTGTCCTGGCGAAAGCTCTCATATCTGCGACTGGATCCGCAAGCAGCTCAACTCAGGCGCTTATACAGACGCAGTTCAGAAACACTTAGTTCAGGCGCAATACTGGCACGATCCTCTCAATGACGACCTGTATAAAAAATACAGCCTCTTCCTTGCTGACATCAATCAGGAGCGG
>TCONS_00029600
CCGGTTTTCATGTTTTTGACTATAAAGTATTGATCACATGATATCTAACGTTAGACTTCCTGCTCTTGGAAACAGTAACATATAAACCATTCGGATCGACTGACGGTATCGGTTTCCGTAGAGATATTAAGATATATGACATACAAGTCTGATACCTGCAggcataaacaaacatttttttttacgtgAGCGGTGTTTTCTGAATGTCATGTGATTGAATGAACAGAAAGTTCTCACTATTGAGATTGAATAATGGCTCCATCGGCTGCTTTTCGTCTGTTGTCTGTCTCTGGATGTCTGCTGTTATTGTGTGGCACATCATGGGCATCTAATGGCACAGTTCCTCTGGTGATTTGGCATGGGATGGgtgaCAGCTGTTGTAATCCTCTGAGTATGGGTGCAATAAAGAAGATGGTGGAGCAGGAAGTCTCAGGAATATATGTGCTTTCCCTCATGATCGGCAAATCTGTTTTTGAGgaCACTGAAAATGGCTTCCTAATGGATGTTAATAAGCAGGTGTCTTTCGTTTGTGACCAACTGGCCAAAGATCCCAAACTAAAGGAAGGCTACAATGCAATGGGCTTTTCACAGGGCGCACAGTTTCTGCGAGCGGTGGCACAGCGCTGTCCAGATCCGCCAATGAGGAACCTCATCTCTGTTGGTGGACAACATCAAGGAGTGTATGGTCTTCCTCGGTGTCCTGGCGAAAGCTCTCATATCTGCGACTGGATCCGCAAGCAGCTCAACTCAGGCGCTTATACAGACGCAGTTCAGAAACACTTAGTTCAGGCGCAATACTGGCACGATCCTCTCAATGACGACCTGTATAAAAAATA

Function

symbol description
ppt1 Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and receptor-mediated endocytosis. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 1. Orthologous to human PPT1 (palmitoyl-protein thioesterase 1).

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0002084 protein depalmitoylation biological_process
GO:0005764 lysosome cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0098599 palmitoyl hydrolase activity molecular_function
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2653 Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and receptor-mediated endocytosis. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 1. Orthologous to human PPT1 (palmitoyl-protein thioesterase 1).

Ensembl:

ensembl_id ENSDARG00000039980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029596 False 5631 mRNA 0.37 9 43736269 43750108
TCONS_00029597 False 1609 mRNA 0.45 10 43740697 43757568
TCONS_00029598 False 904 lncRNA 0.44 5 43740700 43748060
TCONS_00029599 False 800 mRNA 0.46 7 43745454 43750389
TCONS_00029600 True 836 mRNA 0.44 7 43745488 43750659

Neighbor

gene id symbol gene type direction distance location
XLOC_015028 NA coding downstream 24976 43704915 ~ 43711293 (-)
XLOC_015027 si:ch211-193k19.2 coding downstream 76490 43654238 ~ 43659779 (-)
XLOC_015026 fam83hb coding downstream 96938 43612179 ~ 43639331 (-)
XLOC_015025 gpr186 coding downstream 184017 43547465 ~ 43552252 (-)
XLOC_015024 NA coding downstream 193701 43429805 ~ 43542568 (-)
XLOC_015030 klhl43 coding upstream 33364 43790932 ~ 43819610 (-)
XLOC_015031 NA coding upstream 140372 43897940 ~ 43901052 (-)
XLOC_015032 uqcrb coding upstream 291933 44049501 ~ 44065581 (-)
XLOC_015033 rad21b coding upstream 310682 44068250 ~ 44091405 (-)
XLOC_015034 csmd3a coding upstream 366050 44123618 ~ 44955710 (-)
XLOC_014711 CR382300.3 misc downstream 24007514 19728690 ~ 19728755 (-)
XLOC_015023 NA non-coding downstream 453471 43272241 ~ 43282798 (-)
XLOC_015022 NA non-coding downstream 484519 43250524 ~ 43251750 (-)
XLOC_015020 CU207343.1 non-coding downstream 705381 43029382 ~ 43030888 (-)
XLOC_015035 NA non-coding upstream 1246233 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 non-coding upstream 1399934 45157502 ~ 45244708 (-)
XLOC_015038 NA non-coding upstream 1931669 45689237 ~ 45690415 (-)
XLOC_015045 NA non-coding upstream 2655045 46412613 ~ 46420558 (-)

Expression


Co-expression Network