XLOC_015031


Basic Information

Item Value
gene id XLOC_015031
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43897940 ~ 43901052 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030344
agaaaacaaaaacaaataaagaccttattttttttatattccaaACCAGATACACTCTTTCACGGTGCACAATGCTGCCACACACAGGCTAGCCTAGTATAGGCTATTATATATTTCCACTTAATATCGTTATAGaaggtatttttttattataacggGATTTTGtcaagacatattttcctcattgAAGCCGGTTATATGGAACAACATAACTGATGTAGTATTTGCAGTGCTGAAcagttttctgaaaataaagtttACTGTTAAAAATCACTTCCACTTCAGAAGTGACAGTAACATTGAGCATTCGTTTGGAATCATTGCTCATCTCTCCGTGTTAAATATTAAACTTATGGATAGATCCCCTGTAGAGGGGTGATGATGCATGCACACAACGGCAAGCTTAGCGATAGTCCGCTTTTGAAAGACACGGGATCCTTACCAGGGTGTTTGTGCAGCATGCCTCCTTTCAGATAAAATTCTTCATTTTAATTCATGAAATTATTGAAATGTGCGTAACGAACAACTGTATTAATGCCTCTctcaaacgtaaaaaaaaaagtattcatgGTAAAACTTCGGGAAGTGGAAGTATTATggttttaacaatattaaaactgTTAAAGTGTTTAGTAAAGCAACCTAGCGCTTGCATGTAATGTCAAAATAAAGGTTGTTTCATTTAAAACAtcctaacaaaaaataaatatatagcctATAACCGACCCTTATATGAGAAATGCCTTGTCTTAATAAGGGAAAATATGTCTTGACAAAATAAAGAACATACCTTTTATAACGATATTAAGTGGAAATAAATAATAGCCTATAGTAGGCTAGCCTGTGTGTGGCAGCATTGCGTCGCCGTAAATGAGTCGGCCTATCTGGTTTcggaatctaaaaaaaaaattcttcattcatttttgttttctcatgattttattttttgtaatttgaaataaaaaaaaattcaaacaaataattttttgcgTTTTGCTTTTCACCATAAGAACGAAAAACgagtcattttttatatttttatttcaaaattcaAAACCATTCGAAAATCAAGTCGTTAGCGAGTCGACATATGGTGCTGTAGCACTTCAGGGTGTCCCGAGTTCGAAACccggcttgaggacatttcctGTCCCTAacccccctctctctcccacttcgcttcctgtctggaatactgtcctatccacttaaaaaaggcaaaaaggccaaaaataaatcttaaaaaaaaaaaaaaaaaacgaaaataaaaaaaaacgcaatAAATTTCAATTTTCGACTTTTAATTTTATAACGAAAATCAAAAAACGactcatttttaatttttcaatacCCGTTTCTGAAGGTAAATAGTCCTTATGTGGTTAATcatgaaatatttaaatgaaaatgagagtGGCCGTCTAACTAATGACGCATTGTGATTGACTATAGAATAAAGGGGTGGAGTTAGAGGATTGTATCACACACTGAGGCAGGCATTGTGCTGtaacatttgtgtttttaaatcacCTGAagactttaaaaagaaaaacggTACGAAGCAACTACTTGATGTTCTTcgtgaatcattacctttttcATTATcggtttctaaaatgaaaatccaatgaccaaaagatacactgaccGGTGAAAGCATGCAGAGCAGCGTCACGTGATGGAGATCACTCCAGACGCACCGCACATCTCCCATCTAGTAAAATCTTACCTGCATTgcttatgaagaaaaaaaagaaattttggaAAAAGAGAGAGATACAGGGAAACATTTTAAGATTTAATGCTTACAGGAATGTAAAATGAAGAATctcccttaaaaataaaaataataataagaataatttcaTGATGTTAAAGTGTGCATTgaaaccaaataataataataagattttaaTTCAATAAACGTCTACTGATGAATGAGATCAAAAACAAAAGGCGTGAGATGAGATGATAGGGTATGCATGTGATGCATGTTCACAGTATGTACAACTGAcgcgcatgtatgtgtgtgtgtggtttgcagGGGGATCATGGCTGTTTCCTGTGGGAGAATGGCCGGTCGGAGGTGAGAGttttggaGATTCACCACATTCGCGCCCAGCCTGCCATACTAAGCAAAGCAAAGAGGGTTgatgttccgccacaag

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030344 True 2168 lncRNA 0.35 2 43897940 43901052

Neighbor

gene id symbol gene type direction distance location
XLOC_015030 klhl43 coding downstream 78330 43790932 ~ 43819610 (-)
XLOC_015029 ppt1 coding downstream 140372 43736269 ~ 43757568 (-)
XLOC_015028 NA coding downstream 186647 43704915 ~ 43711293 (-)
XLOC_015027 si:ch211-193k19.2 coding downstream 238161 43654238 ~ 43659779 (-)
XLOC_015026 fam83hb coding downstream 258609 43612179 ~ 43639331 (-)
XLOC_015032 uqcrb coding upstream 148449 44049501 ~ 44065581 (-)
XLOC_015033 rad21b coding upstream 167198 44068250 ~ 44091405 (-)
XLOC_015034 csmd3a coding upstream 222566 44123618 ~ 44955710 (-)
XLOC_015035 NA coding upstream 1102749 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 coding upstream 1256450 45157502 ~ 45244708 (-)
XLOC_014711 CR382300.3 misc downstream 24169185 19728690 ~ 19728755 (-)
XLOC_015024 NA non-coding downstream 355372 43429805 ~ 43542568 (-)
XLOC_015023 NA non-coding downstream 615142 43272241 ~ 43282798 (-)
XLOC_015022 NA non-coding downstream 646190 43250524 ~ 43251750 (-)
XLOC_015020 CU207343.1 non-coding downstream 867052 43029382 ~ 43030888 (-)
XLOC_015038 NA non-coding upstream 1788185 45689237 ~ 45690415 (-)
XLOC_015045 NA non-coding upstream 2511561 46412613 ~ 46420558 (-)
XLOC_015047 NA non-coding upstream 2590531 46491583 ~ 46492033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G283423 NA non-coding CI01000071 null 4962938 ~ 4965441 (+)