XLOC_015035



Basic Information


Item Value
gene id XLOC_015035
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 45003801 ~ 45007057 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00030345
aaaaatatgacgtataaaacaaaatataaaacaaaataaaatacaaacataaaatacaaatataaacaatgatgtaattaaatgaacaaatacaaatctttaaaatataaataaaaaataaaataattaaaaaaatagaaaataaataaataaatactaaaaaaaaataaaataaacatatgtaAATTAGCTGTTCTCTTTAGTAGCTGCAGataattgtatattatatatttttttttatgcaaagttatttgttaggctttttatatttgtggctggtCATTTTTCCCAAGTACcaacaattttatttaatgagacatgtagttatttttttattgtcacaatcatataatattattaaataaaataaataaataaatacaacagtttattattattattattattattatttatttatttatttattcttaatctTTCTGAACTCAAACACGTCATCTTATCAACCATTATCCCTTGCCTTTAAGTTACCCTCCCTCAATCAAAAGActcaatttaatcatttaaaattattattaataaataagcatattTGCTCATATGTGCCGGAACATAGACAATTTCCTTAAATCAATAAGAAATACAAATATTTAGCATGCATATATCAGACCCTATGAAATAAAAGTCTGATGCGATTTATGCTTATAAATGTTTTGACTGAAAGAAATCCAGCTTTCCATACTAAAATGATTGGTGCACATGGCAATTTcaaatacacaatatttataaatTGATAGAACCACATCATGACCAACACACAAGTGACACAGTTTAATTACTAAACAGGCCTTTACTAGCAATTGGTGCTGAGTGTTCCTTTTAagacatgcacaaataaatagatgaatcTATTTCTTGATTTTTAATGTTTCTGAACTCAAACATGGGATCAAATCAACCGTTATTCCTTGCCTTTAATTTCCCTCAACCAAAAGACTCAACTTGATCATTTAAGTGTTTATAACAGTATTCAATATGCGAGGCTTAAATCTGCCGTTACACAATAGGCTAATTGCTGAAGAACGCAACAAAACATGCTCTCTTTAAGACAACATGCTAAATAGCATCAAAACAACGGCTAGCTTTTCTAATAATTACAACGAGAGACATTAATCATTGATGTGTGGCCTTTCTGTAATCTTCTGATTAAAGAGAAATCTAGCAACAAAGGAAGAGAATCAGAATAAAACAGCAATCCTGTTTGTTTTTTAGTGAGATGACAGTCTGATAATGAGGCAAAGGatcttttatttctgttaataTATGCCTGGAATTAGCTTAACaaagccaaataaataaatagaaaggcTTGCTTCTAAATCTAGTCCATCATGAAGAGCATGAGGAATCAAGATGTTTGACTTTAAATGTGCTAGGCTAGTGCTTGAGTTAGCattttgagtgtttgtgtgacaAAGGATCTTTTTTCTGTTAATATatgcatgtaattagCTTAACGaaaccaaataaattaataaaagactTGCTTCTAAATCTAGTCTATCATGAAGAGCATGAGGAGTCAAGATGTTTGACTTTAAATGTGCTAGGCTAGTGCTTGAGTTAGCATTTTGAGTATTTGTGTGACAAAGGATCTTTTTTCTGTTAATATATGCATGTAATTAGCTtaacaaaaccaaataaattaataaaagatttGCTTCTATATCTAGTCTATCATGAAGAGCATGAGGAATCAAGATGTTTGACTTTAAATGTGCTAGGCTAGTGCTTGAGTTAGCattttgagtgtttgtgtgacaAAGGATcttttttctgtaaatatatgCATGTAATTAGCTTAACaaagccaaataaataaatagaaaggcTTGCTTCTAAATCTAGTCCATCATGAAGAGCATGAGGAATCAAGATGTTTGACTTTAAATGTGCTAGGCTAGTGCTTGAGTTAGCATTTTGAGTGTTTGTGTTGAAAATCCGTTGTGTTTAGCGCCAATTGTTTAATGCTCTGTTGTGGTTCATCTCATGTCTGGTTAAAGAAGAAGGCATCTGTAGCTGGAAATGTTGTGCTAGAGATCAAACTCAACCCGTCAGATTCATctgcaaagtcatatttttataattatgttcaGTTGTTGCATATAATGAATGCAGTTTAAGAAAGCGTTACCGTTTGATCGCTACAACACAATTTGAAGCCCCCTACTGTGCAGGATAAAAGCGACGCTGAACCTGTTGCGCACCTATGAGCATTGCAAAAGCCAATGAAAAGTGGCCTCGCTTTCCATGGCAAATTGCTTGAAATGGCAGAAAAttgggctttttttttcttctttttctttttctttttttaccgcCCTCCTTTATTTCTATAAGTGTTTACGTCATTTTTTTCTTGCTCTCCTTTTATGCTTCTTTCTTCAGTAAAGGAGGCCTATGGGCACAGCCTGGTTACCACAGTAACCAGCAGATACCAGCGATGCTGCAGAGACTCTCTAAatgacatgcacacacatatgcatacacacacacacacacacacacacacacacgttttataTGTGATTGAGAACATGATAAAGTTAAATTGAGCAGCTGCTTTGAAGTATTTTAAGCGTGCCCAATTGATCTCAGCTTCCAATCTATATTTGTAATTTTCTCCCCCCATGAAATGAGCGTTTGACATGCAAGATGAGCATGTGTGCACACTTTATAATTCTGTGTTTGAGTAAAATCTATTTTTCTTCCAC

Function


GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0034703 cation channel complex cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00030345 True 2735 lncRNA 0.32 2 45003801 45007057

Neighbor


gene id symbol gene type direction distance location
XLOC_015034 csmd3a coding downstream 48091 44123618 ~ 44955710 (-)
XLOC_015033 rad21b coding downstream 912396 44068250 ~ 44091405 (-)
XLOC_015032 uqcrb coding downstream 938220 44049501 ~ 44065581 (-)
XLOC_015031 NA coding downstream 1102749 43897940 ~ 43901052 (-)
XLOC_015030 klhl43 coding downstream 1184191 43790932 ~ 43819610 (-)
XLOC_015036 FP340497.1 coding upstream 150445 45157502 ~ 45244708 (-)
XLOC_015037 trps1 coding upstream 368612 45375669 ~ 45650994 (-)
XLOC_015038 NA coding upstream 682180 45689237 ~ 45690415 (-)
XLOC_015039 eif3hb coding upstream 849114 45856171 ~ 45960191 (-)
XLOC_015040 si:ch211-153f2.3 coding upstream 976590 45983647 ~ 45985989 (-)
XLOC_014711 CR382300.3 misc downstream 25275046 19728690 ~ 19728755 (-)
XLOC_015028 NA non-coding downstream 1292508 43704915 ~ 43711293 (-)
XLOC_015024 NA non-coding downstream 1461233 43429805 ~ 43542568 (-)
XLOC_015023 NA non-coding downstream 1721003 43272241 ~ 43282798 (-)
XLOC_015022 NA non-coding downstream 1752051 43250524 ~ 43251750 (-)
XLOC_015045 NA non-coding upstream 1405556 46412613 ~ 46420558 (-)
XLOC_015047 NA non-coding upstream 1484526 46491583 ~ 46492033 (-)
XLOC_015051 NA non-coding upstream 1992204 46999261 ~ 47173408 (-)

Expression



Co-expression Network