XLOC_015039 (eif3hb)


Basic Information

Item Value
gene id XLOC_015039
gene name eif3hb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 45856171 ~ 45960191 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029618
GGTCTTCTCGATTCTTGAATCCCCGGCGCTCatcaagataataataataatggcatcCCGTAAAGAAACCCCGAATGGAAAAACACTGGATACACCTGTCAAACAGATCCAAATCGAGGGACTGGTGGTGATGAAGATCATCAAGCACTATCAGGAGGAAGGTCAGGGCAGTGAGGTGGTGCAGGGAGTCCTGCTGGGGCTGGTGGTCGAGGATCAGCTGGAGATCACCAACTGCTTCCCGTTCCCTCAGCACACTGAGGATGATGCTGACTTTGATGAAGTTCAGTATCAGATGGAGATGATGAGAAGTCTTCGGCATGTCAACATTGATCATCTTCACGTGGGTTGGTACCAGTCAACGTTATACGGGTCTTTTGTCAGCCGAGCGCTTCTGGACTCTCAGTTCAGCTACCAGCACGCTATCGAGGAGTCCGTCGTGCTAATATACGATCCCATCAAGACAGCCCAGGGGTCGCTGTGTTTGAAAGCCTACAGACTGACCCCCAAACTCATGGAGATCTGTAAAGAGAAGGACTTCTCCTCAGAAGGgCTGAAGAAGGCCAGTGTGGGCTATGAGCACATGTTCGAGGAGGTGCCGATCGTCATCAAGAACTCTCATCTCATTAATGTTCTGCTGTGGGAACTGGAGGAGAAATCCACCGCCGCCGACAAACACGAGCTCCTGAGCCTCTCCAGCAGTTCTCATCTTGAGAAGAGTCTGCAGATGCTGATGGACCGTGTGGATGATATGAGCCAAGACATCGTCAAATACAACAACTACAGCCGCAGCCTCAgcaaacagcagcagcagaaacACCAGTATGTCCAGAGACGTCAGCAGGAGAACGCACAGAGGCAGAGCCGTGGAGAGCCGCCTCTGCCAGAAGAAGACCTGACCAAGATGTTCAAGCCTCCGCAGCCGCCGCCACGCATGGACACGCTGCTCATCGCCAGTCAGATCAACACATACTGCCAGACCATCAAGGAGTTCACGTCTCAGAATCTGGGGAAACTCTTCATGGCTGAAGCTCTGCAAGGGCCGAGTAGTTAAAACAAGATTAGTGTCTGGTTAATTTAACACATTCAGCTgctttttaatgcttttatttcacatttctaGACCAGACCCAGTAAATATACGCTCAACAGGGGCTTGAATACCCATCAGACGGGTCCGTTTATTTCAGCATGTATAGTATAAAATGTGGACTAAGTTATCATTTCTTTGAAAGGAAATCAGTGTACCTGTCAATAATGTGTAAAAAGAGATGTCGGAGATTGGGTAATAAATGCTTTGGTGTCT
>TCONS_00029619
gataataataataatggcatcCCGTAAAGAAACCCCGAATGGAAAAACACTGGATACACCTGTCAAACAGATCCAAATCGAGGGACTGGTGGTGATGAAGATCATCAAGCACTATCAGGAGGAAGGTCAGGGCAGTGAGGTGGTGCAGGGAGTCCTGCTGGGGCTGGTGGTCGAGGATCAGCTGGAGATCACCAACTGCTTCCCGTTCCCTCAGCACACTGAGGATGATGCTGACTTTGATGAAGGTAGGAGACTGAAACGACTAAAGCCCACATTGTTCGTGAAGTTGCTGTgaaaatatacacaaatgtaCACAACTTAACTCTTTATGAATTTTTTGACATTGAGCatcattgatttctgttattta
>TCONS_00029620
CGATTCTTGAATCCCCGGCGCTCatcaagataataataataatggcatcCCGTAAAGAAACCCCGAATGGAAAAACACTGGATACACCTGTCAAACAGATCCAAATCGAGGGACTGAGTCTCTGCTATTGTCAAGCCTTGGTTCTCTTTCTGCATGATCAGATAACTCAGAGAGGTCAATGTGTCATCGGTCAGCAGGGGGCAGCAGCGCTCCACACATTCACTGAACTGCATCTGTGCTCTTCTTCATGCACATCAGCACTGCTTCACATCTCCAGCAGTGACGCTCACTGTCAGTCTCTTCTGAACACGCTGACGACTGAGACTTATATCCAGACATCAGAGCCTACAAGCAGACAGCCCTCTGGAATATTCACTTTCATCTCAATAGATTCTGCgctctatatatttatatcagaACGTAAATTTATGTATATAACGTATATATGCAGGGCTTCAGGCATTAAAAGTTGCACCGGTGCCACTAAGTTCTTCAGACGGTGGCACCAGGACATGATTTGATAACGCTGCATGTGGTATTAATGATATCATAACTGCAAAATTAGCAGTGTTATTTCAACTCTTAACAGTGTCAAATCAACCCTGAATGAGTGAACATAATGTCTCAATATTTTCATAGTTAAAGTTACTCTTAAGATATTTACACTATAATTGAGTCATATTTTACACTGTATTGGGTTAAAAATAACTCTGGGAATTGATTGTTACTTGACTCTAGTGTAAAGATTGAAAATTCAGTACTCTGTTTTTTACtccagtgtacctaataaatattacaatacttATGATTCAGATAA

Function

symbol description
eif3hb Predicted to enable metallopeptidase activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within brain development and heart development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic 43S preinitiation complex and eukaryotic translation initiation factor 3 complex. Predicted to be active in cytosol and polysomal ribosome. Is expressed in brain; esophagus; eye; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; prostate cancer; and prostate carcinoma. Orthologous to human EIF3H (eukaryotic translation initiation factor 3 subunit H).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0007507 heart development biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0007420 brain development biological_process
GO:0005829 cytosol cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008237 metallopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-42 Predicted to enable metallopeptidase activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within brain development and heart development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic 43S preinitiation complex and eukaryotic translation initiation factor 3 complex. Predicted to be active in cytosol and polysomal ribosome. Is expressed in brain; esophagus; eye; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; prostate cancer; and prostate carcinoma. Orthologous to human EIF3H (eukaryotic translation initiation factor 3 subunit H).

Ensembl:

ensembl_id ENSDARG00000036116

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029618 False 1303 mRNA 0.49 8 45856171 45960191
TCONS_00029619 False 370 lncRNA 0.44 2 45943054 45960155
TCONS_00029620 True 817 processed_transcript 0.39 2 45955079 45960183

Neighbor

gene id symbol gene type direction distance location
XLOC_015038 NA coding downstream 165756 45689237 ~ 45690415 (-)
XLOC_015037 trps1 coding downstream 205177 45375669 ~ 45650994 (-)
XLOC_015036 FP340497.1 coding downstream 611463 45157502 ~ 45244708 (-)
XLOC_015035 NA coding downstream 849114 45003801 ~ 45007057 (-)
XLOC_015034 csmd3a coding downstream 900461 44123618 ~ 44955710 (-)
XLOC_015040 si:ch211-153f2.3 coding upstream 23456 45983647 ~ 45985989 (-)
XLOC_015041 krit1 coding upstream 30863 45991054 ~ 46018152 (-)
XLOC_015042 nup153 coding upstream 59122 46019313 ~ 46058963 (-)
XLOC_015043 ptdss1b coding upstream 106698 46066889 ~ 46091605 (-)
XLOC_015044 si:ch1073-228h2.2 coding upstream 257908 46218099 ~ 46219035 (-)
XLOC_014711 CR382300.3 misc downstream 26127416 19728690 ~ 19728755 (-)
XLOC_015031 NA non-coding downstream 1955119 43897940 ~ 43901052 (-)
XLOC_015028 NA non-coding downstream 2144878 43704915 ~ 43711293 (-)
XLOC_015045 NA non-coding upstream 452422 46412613 ~ 46420558 (-)
XLOC_015047 NA non-coding upstream 531392 46491583 ~ 46492033 (-)
XLOC_015051 NA non-coding upstream 1039070 46999261 ~ 47173408 (-)
XLOC_015054 CU929178.2 non-coding upstream 1439998 47400189 ~ 47400307 (-)
XLOC_015055 CU929178.1 non-coding upstream 1455399 47415590 ~ 47416405 (-)

Expression


Co-expression Network