XLOC_015042 (nup153)


Basic Information

Item Value
gene id XLOC_015042
gene name nup153
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46019313 ~ 46058963 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029624
GCGCTACTGAGCAGACTCAATCTAGTTAACCATGGCGGCGACAGGAGGAGGGAAAATCAGATCCAGAAGACACCACATTGCGTCAAAACCCTACGCCAAAGGCAAACAGCAGCCTGGCCTGATCACTCGAGTGACGGATACAGTGAAGAGTATAGTCCCCTCCTGGCTTCAGAAATACTTCAGAAATGGAGAAGGTCCAGAGGGTGGAGCTTCTGCAGCAGGGGTGGAGCACAACAATATGACTCCTCCCCCCAACGGCAGTGACGAAGCCCCGCTCCGAGACGGACGAGACTCTCCAGAGCCGAGCACAAGTAACACAGAACCATCTACAAGCAGAGCGTCGCTGAACTTCCAGGAAGCTCTGTCGAGGCCTCCGCTCAACCGGACCCACCTTCAGTTCCCCTCCCTGGACGGCTCCCCAGCTTTGGGCGGCTCCAGCTCTCTTTTCTCCCAGCCCTCCACATCCACAGCACCCTTCTCAGGGAGCCCTTTCGCTGTGACCTCCAACTTCTCACTGGTTAAAGAGATCAAGGATTCCAGCTCTCAGCATGAGGATGACAACATCTCCACGACCAGTGGCTTCTCATCACGTGCATCTGATAAAGATGTGCCCACGTCAAAGACTGTGCCGCTCCTCTGGTCCCCAGAGACAGAACGCACCCACTCTGGATCGCAGACAGCCCACTCCGGGCTCAAGAAACCAGCCTTCAACCTGTCAGTCTTTGGCACTTCCTCATCATCTGTATTGAACAGTTCAGTGCTGAACTCCAGTCAGTTGGGGGATTCGCCATTTTACCCTGGGAAGACCACATATGGAGGAGCTTCTGCGATGAGAACCGCTCGATCACGCCCAGCTACTCCTTATCAGCCTCCTGTTAGGAGACAGATCAAGGCAAAGCCAACCGGAGCTCAGCCCTGTGGAGTGACCAGTGCCACAGCGAGACGCATCCTGCAGTCCCTGGAGCGCATGTCCAGTCCTCTTGCTGATGCAAAGAGAATTCCGTCTACAGTTTCATCACCTCTGTCAGCTtcatTAAATCACACAGACCTTGACATCTCAAATTACCAGGCAAAGAGGAAAAGGCTGGAGCCGTCAGTTCCTCCTGTGCAGAAGCTGGTGGTCCCTGCAGCTGCTGCAGTGTCTGGTAACCGCTCAATATCCTTTAGACCATCACTCACCCCAGGTGGAGTGAGCAGAGGAGTGGAAAAAACCAGCAGAGAGACTCCGGTAAGACAATCCCCTCCGATTTCAGAACCCGCCCAGGCTCCCCCTCCAAGCACAAGTACTTTGTCGTACCCCTTGTCCAGCACCCCGGCTGCTAACAGTGCTGCTCTAGGAGGTGGCAAAATGAAGAGAGAAAGGGCCATCAGACCTTCATCCAAACGGCCTGATGATGAGGTTGCTGAGGAACCAGATCTGCCGCCAGCTTCTCTTCCCAGCAATTTCACTTTGCCAACATTTACTTTCTCCACTCCTCCTCCGACCTCCTCGCTCAAATCCAGCACAGCACCACTTATAACCGTCTCGGAGGAGCCAGCAGCGAATAAGCAGCCGGCTGCACCATCCACACCACCATCTGCCCCCTTCACGTTCTCTTCACCTATCGTCAAGGCAACAGCTGCCAGCCCTCCATCTTTCTCTCCATCGTCTGGATTCACCTTCAGTGCACCTACTATGAAAATGGGTCCCTCTTTCTCCAATGGGAAAATTGTTCCATCAGTAGCACCAGTCAAATCAGTGGTCATTGAAGAAAAGGAGTTTGAAGGACCATTCAAACCTGCAAAGGTCTTAAAACAGGGCAGTGTGTTGGACATACTTAAGGGTCCTGGATTTGCATCCCCCTCTCAGAATTCGACTGATAAACCTTTACAGTCCacatcaacaacaacatcatctCCATTTTCTGGTTTTGGTGACAAGTTTAGGCCACCGGCAGGATCATGGAACTGTGGAACTTGCATGTTGCAAAACAAGCCCTCGGACAAAAAGTGTGTGGCTTGTCTCGCACCACAGCCCAACACAGACTCTTCTAAATCGGACAGTAAACCCGCAGAAGCTCCTGCAAGCATCAGTTCCCTCTTTGCTCCTCCGGCTGGTAGCTGGGAATGTGACACATGTCTGGTCAGTAACAAACCGGACGCAGTTAAATGTGTAGCTTGTGACACAGCCAAACCTGGAACTGGAGTAAAATCCAGCCTGACTCTACTGGCTGCCTCTGAGTCTTCATCCTCTACAACCACCACAGCAACCACCACTGCTGCTGCTTTGACTTCAACTGGACTGTTAGGATTGGGGGACAAATTTAAGAAGCCAGAAGGGGCTTGGGATTGTGATGTGTGCATGGTTCAAAATAAGGCTCAGGATCTGAAATGCGTAGCCTGTCTGACCGCTAAACCAGGAGCTGCAGCTGCACCGCTCTCGACTCCGGCATCTGCACCTGTAAGCTCTGCTGCGCCTTTGTTAGGATTCGGAGACAAGTTTAAGAAACCTGAGGGGAGCTGGGAGTGTGACGTGTGCTGTGTTCAGAATAAAGCAGACGACCAGCAGTGTGTGGCCTGCCAGTCAGCAAAACCAGGAGCTAAAATAGAGTCCAAAGgttTTAGTTCATCTTTTGGCGTTCAGTCCAACAGCACAGACTCAAATACATCTGGTTTTAAGTTTGGTACCGGCTCTACagactcctcttcctcctctgctGGACTAAAGTTTGGAGGTACTTTCTCAGATTCATCCACCACAGGAGGAATTAAATTTGGGTTTGGATTGTCGTCCACGAGTTCAGAGGGCTTCAAATTTGGAGGCTCGTCCTCAGATGCAGGTGGTGCTAAACTTTCTAGCACCTTATCAGAATCCACAGCCACAAAAGAGAGTTCAACAAAGAGCTTCGCGTTCGGTGGATCTGCGGATGACACGCTTGAAAAAAAGAGTAAAACTCAGGAGTCTAATACAGGATTTAAATTTGGTGGCGGGAGTGGGATGGCTTCTGGCTCGGAAAACTCTTCGTTTTTATTTGGAGCTAAACCCAGTGAGAAGGGAAGCTCAAATCCATCTTTTAGTTTCCCTGTGCCTCAGTCCAAGGTTGAAAAAGATGCTCCATCAGAGACACCACCAGTTTcaaacaccaccaccaccaccacagcAGCGAACGCGCTCCCTGTATTTGGCAAATCTTTAGTCGCAGAATCTTCTGCCCCAAAGTTTGGGGAACCGGCAACAAAAGAGCAAACGCTGGTGACGTCTACTTTTACCTTTGGAAAGCCAGAAGAGAAAAAGGACACCTCTGCACCCTCCAGTACATTCTTATTTGGTTCTTCTAAGGAAGCTGAGAAACCAACACCAAACCTAGGCTTCGCTTTTAGTGAGCCAGACCCTCCAAAGGATTTCCCCAAGCCTGCGCTTACATTTGGGAAACCTGCCGAGTCGACAGAACCCCCAAAGCCATCATTTGGTTTTGGACAGAGTTTGACAGAAACTTCTGCTCCAAAGCCCTCTTTTGGCTTCATGGCCAACTCCACCTCCAGCACCCCAGCCTCCTCCAGCTCCACCCCCAGCCTTTTCGGCACTCCCACCACCTCTTCCCTGGCTCCCACGCCTGCTCCCACTAGCACCTTTGTGTTTGGCCAGAATTCCTCCTCTGAACTAAATGTGGGAAAGACTTTCGTGTTCGGACAGCAGCAGCAGGACAGTCAGCCGGCTCCTCCTGCGGCCCCTTCTGCTGCCCCAGCACAGCCTTTCCAGTTTGGCTCGGGCTCAAACTCATCCACCCCTTCTTTCACATTTGGTGCTGCTGCGTCCTCCACCCCTGCCTCTGCTGCTCCAGCTCCGTCTGCAAACCCGTCCCCATTTGTCTTCAGTTCTGCTGCTCCTTCATCTGGCTTTGGCTCCGGACAGACTCCAATTTTCGGGCAAAGTGCGTCTCAACCCAGTGCTCCTGCGTTCGGATCAGCAGCACCTTCGTTTTCGGCCTCTGCCACCCCGGCTTCTACATTCGGAGCCAAACCCAGTTCTGCCCCTGTTTTCGGTCAGCAAGCCAATGCTGCGCCGACGTTTGGGTCAACTGCTGCCTCCACAGGACAAGGAGGTTTCCAGTTTGGAAGCACTGGTGGTTTTGGAGCATCAGCGACCAGCAACAGTGTGTTTAACTTTGGTGGAGGATCAGCAGCTCCTGCTGCCAGTCCAGCCATGCCCGCGTTAAACCCTCCTGCTGGTGGAGGCTTCGGCTTTAGCCCGACTCCTGCTTTTAACATTGGGTCAGCAAAGAGTTCCTTCACCGCCTCACCCGCTGGACAGAATTCAATCGCAGGACGCAAAATCAAAACCGCTGTTCGGCGCAGGAAGTAAACCTTGCGACAGCTCCGAGCGCAGACTATTGGGACAAACACTGAAGTACTTAGTATTTTGAGCATGGCGCTGTGATGAACTCGTAGCGCCAGCAGATCTGTTTTTTTGCAATGGAGGTCATTGACAAACTGAACGGCGAACACTGGCCCAAAAACAAAGACTGAAAGATGCAAAATAACATTACAATCAAGCAAGAACCTTTTAAACGGGACGGTAATCTTTGCAGCATCTGCATCGTGTGCAGGGTTTTGAGTTCATCTTCTCTTATTTTGTAAGTAAATAAAACGAACGAGAATTTAATGATGCTCTGAAGACAAAGTATCGGCGGGTTGAGAGAGAGACACATGGGTGTGCTGTTTCCATGTACTAAATAAcccgtgtgtttgtttgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttcagcgcgcaggttgtgtgtgtggtttttgtACGTGCCGAATTGTGTTTGATGTAAAAGCGTAGACTGAGTGCCGTCTGATGTGAGAAGCAAAATGAATGTTATGAGGAGGTGGTGAAACTGAGGGCCGTGAGCCTCCGCTGCAGAGATTTTTGCAGGCAAGGAAAAGTCCtgaattcttcttcttctctctGTAAATGCATCGTTCTCAATCTGTTCATGTTCATcttgtatattttatttcctcCTCATTTTCGTCTAGCCTCTCAATTTGATACCAACCTCTCTCGCCCTTTCTCTCTCTTCGCTTTTTGTTCTGTCCTTCATCCCTTGCGCTTCTGAATCAAATAATTGGcctttgaaatattattaaaaattgtaaataggattttttttttttttaaatctgtgaaGTTTTGTGTGTTTAAACCAGCTTCTTCTTCCTTTTTCTTTCGTTCAGTGTTCTGTCTTTTTAGAAATTATGTAAAGCCCTTAATTCAAAGTTGCCCAAATCCATTTAAAAGTAAACTTAAATGCAAATTGGGGATCCTTTGAAGAGTAAAAGGAATATTGGCTTTTCTGATCCACTTTTGTTTGGACCAAAACCAGTATTGTAAAAAGTGTtaagtatatatttttctatGACTTGTTTAAATGGACTTAGGGTGACTTTGGATGATAAGGACGTCTGCTTAATTTTAAAGCCATGTTAATTATTACTGGCTGAGTGATA
>TCONS_00029626
ATGATTAAACAATATTGCactgaatatattattattattgtcagttttAATCCAACAATTTAATTCCAAAACAGATTTATAaagaaattaaacatttcaaTGTAGCTCTGAAGTTCTGCTTTCTAAATCTGAGGTTTCCAGTTTGGAAGCACTGGTGGTTTTGGAGCATCAGCGACCAGCAACAGTGTGTTTAACTTTGGTGGAGGATCAGCAGCTCCTGCTGCCAGTCCAGCCATGCCCGCGTTAAACCCTCCTGCTGGTGGAGGCTTCGGCTTTAGCCCGACTCCTGCTTTTAACATTGGGTCAGCAAAGAGTTCCTTCACCGCCTCACCCGCTGGACAGAATTCAATCGCAGGACGCAAAATCAAAACCGCTGTTCGGCGCAGGAAGTAAACCTTGCGACAGCTCCGAGCGCAGACTATTGGGACAAACACTGAAGTACTTAGTATTTTGAGCATGGCGCTGTGATGAACTCGTAGCGCCAGCAGATCTGTTTTTTTGCAATGGAGGTCATTGACAAACTGAACGGCGAACACTGGCCCAAAAACAAAGACTGAAAGATGCAAAATAACATTACAATCAAGCAAGAACCTTTTAAACGGGACGGTAATCTTTGCAGCATCTGCATCGTGTGCAGGGTTTTGAGTTCATCTTCTCTTATTTTGTAAGTAAATAAAACGAACGAGAATTTAATGATGCTCTGAAGACAAAGTATCGGCGGGTTGAGAGAGAGACACATGGGTGTGCTGTTTCCATGTACTAAATAAcccgtgtgtttgtttgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttcagcgcgcaggttgtgtgtgtggtttttgtACGTGCCGAATTGTGTTTGATGTAAAAGCGTAGACTGAGTGCCGTCTGATGTGAGAAGCAAAATGAATGTTATGAGGAGGTGGTGAAACTGAGGGCCGTGAGCCTCCGCTGCAGAGATTTTTGCAGGCAAGGAAAAG
>TCONS_00029625
cTGGAGCAAAattctccaggacaccggccttccaggactgagtttggacacccctgGAGGTTTCCAGTTTGGAAGCACTGGTGGTTTTGGAGCATCAGCGACCAGCAACAGTGTGTTTAACTTTGGTGGAGGATCAGCAGCTCCTGCTGCCAGTCCAGCCATGCCCGCGTTAAACCCTCCTGCTGGTGGAGGCTTCGGCTTTAGCCCGACTCCTGCTTTTAACATTGGGTCAGCAAAGAGTTCCTTCACCGCCTCACCCGCTGGACAGAATTCAATCGCAGGACGCAAAATCAAAACCGCTGTTCGGCGCAGGAAGTAAACCTTGCGACAGCTCCGAGCGCAGACTATTGGGACAAACACTGAAGTACTTAGTATTTTGAGCATGGCGCTGTGATGAACTCGTAGCGCCAGCAGATCTGTTTTTTTGCAATGGAGGTCATTGACAAACTGAACGGCGAACACTGGCCCAAAAACAAAGACTGAAAGATGCAAAATAACATTACAATCAAGCAAGAACCTTTTAAACGGGACGGTAATCTTTGCAGCATCTGCATCGTGTGCAGGGTTTTGAGTTCATCTTCTCTTATTTTGTAAGTAAATAAAACGAACGAGAATTTAATGATGCTCTGAAGACAAAGTATCGGCGGGTTGAGAGAGAGACACATGGGTGTGCTGTTTCCATGTACTAAATAAcccgtgtgtttgtttgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttcagcgcgcaggttgtgtgtgtggtttttgtACGTGCCGAATTGTGTTTGATGTAAAAGCGTAGACTGAGTGCCGTCTGATGTGAGAAGCAAAATGAATGTTATGAGGAGGTGGTGAAACTGAGGGCCGTGAGCCTCCGCTGCAGAGATTTTTGCAGGCAAGGAAAAG
>TCONS_00029627
CCACCAGTTTcaaacaccaccaccaccaccacagcAGCGAACGCGCTCCCTGTATTTGGCAAATCTTTAGTCGCAGAATCTTCTGCCCCAAAGTTTGGGGAACCGGCAACAAAAGAGCAAACGCTGGTGACGTCTACTTTTACCTTTGGAAAGCCAGAAGAGAAAAAGGACACCTCTGCACCCTCCAGTACATTCTTATTTGGTTCTTCTAAGGAAGCTGAGAAACCAACACCAAACCTAGGCTTCGCTTTTAGTGAGCCAGACCCTCCAAAGGATTTCCCCAAGCCTGCGCTTACATTTGGGAAACCTGCCGAGTCGACAGAACCCCCAAAGCCATCATTTGGTTTTGGACAGAGTTTGACAGCTCCAGCTCCGTCTGCAAACCCGTCCCCATTTGTCTTCAGTTCTGCTGCTCCTTCATCTGGCTTTGGCTCCGGACAGACTCCAATTTTCGGGCAAAGTGCGTCTCAACCCAGTGCTCCTGCGTTCGGATCAGCAGCACCTTCGTTTTCGGCCTCTGCCACCCCGGCTTCTACATTCGGAGCCAAACCCAGTTCTGCCCCTGTTTTCGGTCAGCA
>TCONS_00029628
CCCGCCCAGGCTCCCCCTCCAAGCACAAGTACTTTGTCGTACCCCTTGTCCAGCACCCCGGCTGCTAACAGTGCTGCTCTAGGAGGTGGCAAAATGAAGAGAGAAAGGGCCATCAGACCTTCATCCAAACGGCCTGATGATGAGGTTGCTGAGGAACCAGATCTGCCGCCAGCTTCTCTTCCCAGCAATTTCACTTTGCCAACATTTACTTTCTCCACTCCTCCTCCGACCTCCTCGCTCAAATCCAGCACAGCACCACTTATAACCGTCTCGGAGGAGCCAGCAGCGAATAAGCCGGCTGCACCATCCACACCACCATCTGCCCCCTTCACGTTCTCTTCACCTATCGTCAAGGCAACAGCTGCCAGCCCTCCATCTTTCTCTCCATCGTCTGGATTCACCTTCAGTGCACCTACTATGAAAATGGGTCCCTCTTTCTCCAATGGGAAAATTGTTCCATCAGTAGCACCAGTCAAATCAGTGGTCATTGAAGAAAAGGAGTTTGAAGGACCATTCAAACCTGCAAAGGTCTTAAAACAGGGCAGTGTGTTGGACATACTTAAGGGTCCTGGATTTGCATCCCCCTCTCAGAATTCGACTGATAAACCTTTACAGTCCacatcaacaacaacatcatctCCATTTTCTGGTTTTGGTGACAAGTTTAGGCCACCGGCAGGATCATGGAACTGTGGAACTTGCATGTTGCAAAACAAG

Function

symbol description
nup153 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within angiogenesis. Predicted to be part of nuclear pore. Orthologous to human NUP153 (nucleoporin 153).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0001525 angiogenesis biological_process
GO:0044613 nuclear pore central transport channel cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017056 structural constituent of nuclear pore molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-4581 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within angiogenesis. Predicted to be part of nuclear pore. Orthologous to human NUP153 (nucleoporin 153).

Ensembl:

ensembl_id ENSDARG00000099972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029624 False 5513 mRNA 0.49 22 46019313 46058963
TCONS_00029626 False 1000 lncRNA 0.44 3 46019877 46022808
TCONS_00029625 False 926 processed_transcript 0.48 3 46019877 46022879
TCONS_00029627 False 578 mRNA 0.52 2 46025162 46032556
TCONS_00029628 True 717 mRNA 0.50 7 46035618 46037835

Neighbor

gene id symbol gene type direction distance location
XLOC_015041 krit1 coding downstream 1161 45991054 ~ 46018152 (-)
XLOC_015040 si:ch211-153f2.3 coding downstream 33324 45983647 ~ 45985989 (-)
XLOC_015039 eif3hb coding downstream 59122 45856171 ~ 45960191 (-)
XLOC_015038 NA coding downstream 328898 45689237 ~ 45690415 (-)
XLOC_015037 trps1 coding downstream 368319 45375669 ~ 45650994 (-)
XLOC_015043 ptdss1b coding upstream 7926 46066889 ~ 46091605 (-)
XLOC_015044 si:ch1073-228h2.2 coding upstream 159136 46218099 ~ 46219035 (-)
XLOC_015045 NA coding upstream 353650 46412613 ~ 46420558 (-)
XLOC_015046 ext1b coding upstream 362386 46421349 ~ 46566430 (-)
XLOC_015047 NA coding upstream 432620 46491583 ~ 46492033 (-)
XLOC_014711 CR382300.3 misc downstream 26290558 19728690 ~ 19728755 (-)
XLOC_015036 FP340497.1 non-coding downstream 774605 45157502 ~ 45244708 (-)
XLOC_015035 NA non-coding downstream 1012256 45003801 ~ 45007057 (-)
XLOC_015031 NA non-coding downstream 2118261 43897940 ~ 43901052 (-)
XLOC_015028 NA non-coding downstream 2308020 43704915 ~ 43711293 (-)
XLOC_015051 NA non-coding upstream 940298 46999261 ~ 47173408 (-)
XLOC_015054 CU929178.2 non-coding upstream 1341226 47400189 ~ 47400307 (-)
XLOC_015055 CU929178.1 non-coding upstream 1356627 47415590 ~ 47416405 (-)

Expression


Co-expression Network