XLOC_015043 (ptdss1b)


Basic Information

Item Value
gene id XLOC_015043
gene name ptdss1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46066889 ~ 46091605 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029629
GGACGATGGAGACTCTGATAAGAACCTGCGTGTGGGCTTGCTGCTGGTCGTCTCTTTCTTTCTTGTTATCAGCGTTCTTGCCTTTCCCAACGGTCCTTTCACGCGTCCTCATCCCTCTGTATGGCGCATGGTGTTTGGTCTCAGCGTGCTTTATTTCCTCTTTCTGGTGTTCCTGATCTTCCTGAACTGGGATCAGGTGAAGGCGCTGTTGTATTGGCTCGACCCAAATCTGCGTTACGCCAAACGAGAAGCAGATGTGATGGAGTATGCAGTAAACTGTCATGTCATCACCTGGGAGCGGATCCTGAGTCATTTTGACATCTTCGCCCTGGGTCATTTTTGGGGTTGGGCTATGAAAGCTCTGCTCATCCGCAGCTACGGACTCTGCTGGACCATCAGCATCACATGGGAGCTCACCGAGCTGTTCTTCATGCACCTCCTGCCAAACTTTGCGGAGTGCTGGTGGGATCAGGTCATTCTCGATATCCTGTTGTGCAACGGTGGAGGGATTTGGCTTGGCATGACTGTGTGCCGCTTTCTGGAGATGCGCACCTACCGATGGGCCAGTATCAAggataTCCACAGCACCTCGGGAAAGCTGAAGCGGGCCGTTCTTCAGTTCACTCCGGCCAGCTGGACGTATGTGCGCTGGTTCGACCCCAAATCCTCCTTCCAGAGGGTGGCTGGAATCTACCTCTTCATGATAGTATGGCAGCTCACAGAGTTGAACACCTTTTTCCTGAAGCACATCTTCGTGTTTCAGGCCTCTCATCCTCTCAGCTGGTGCCGGATCCTCTTCATTGGGATCATCACTGCTCCTACAGTGCGGCAGTACTACGCTTATGTGACAGACACACAGTGCAAAAGAGTTGGAACACAGTGTTGGGTGTTTGGGGCCATTGCTTTCCTGGAGGCTCTGGCTTGCATCAAATTCGGACATGATTTGTTCTCTAACACACAAGCTCTGTATGTTGTCTTTTGGCTTTTGTGTCTGGCGTTCATTACATTTCTCTGTCTGTATGGGATGGTTTGGTACGAGCAAAATTATGGGAAGAAACTGAAGAGAATTCCAGATGACGACGGCACTTCTACTGACCCGTATGACAGTCTTCCTGAAGCTGCAAAAGAGAGGAGCTCCAGTAGCAACTCCAGCTCATCACGTAGAAGAAAAGGAGGAAAACACAAAACCGCCAATGGAACCAGTGGCAAGAAGTGAGCAGAAATGAACCCTGATGATCTGTGGATGGACTCGAGTATGAAGGAAACACACAGTAGAGAAGTGAAGAGAAGCGTAGAGAACATTTGAAGTAAagcacagacacagacacacttcCGTACACGGAGACTCAATGCACACCACTGCCTCTGTCTTTACAAAGCACTACCGCTGCATTTAAAGCTTTCCTACTCAGATTATGTCTCTTTTctaatctaaatatctaaaatgtctcaaatcaagaagcatttttcagACAAGTAaaacacattgtcttgttttaagatataataagccaaaatgaagtgagtttttccttaaaacaagcaaaataatcttgtcttttgttttgaaatgcttgttttaaggaaaaactcaattcATTTTGACTCACAAGACAATAATTTTGCTTGTCCAGAAATtcctcttgatttaagaatgttttgatatttggactagaaacaagaccaaaagaTCTCAGTAAGAAAAGCTTGTTTTGCCCTACAGTGCACTCGATTTATTCAAGAGCACTTGGAAGGAAACATAGTTGTGTTGTGCAGATGACTGTAAATGATGCACACTTAAAGGGATAAGTCCCTCATAATTAAAATACTCTAATGATTTATAATCACCCTCAA
>TCONS_00029630
ATGGCGCCCAGTCAGGGCTCTAGGATGCTTAGTAAAGATGATGCTGATTATAAACTTCACTTTAGGATGATAAACGAGCAGCAAGTGGAGGACATCACTATTGACTTCTTCTACAAACCGCACACCATAACTTTACTAACGTTCACCGTCGTCAGCATAATGTACTTTGCTTTCACCAGGGACGATGGAGACTCTGATAAGAACCTGCGTGTGGGCTTGCTGCTGGTCGTCTCTTTCTTTCTTGTTATCAGCGTTCTTGCCTTTCCCAACGGTCCTTTCACGCGTCCTCATCCCTCTGTATGGCGCATGGTGTTTGGTCTCAGCGTGCTTTATTTCCTCTTTCTGGTGTTCCTGATCTTCCTGAACTGGGATCAGGTGAAGGCGCTGTTGTATTGGCTCGACCCAAATCTGCGTTACGCCAAACGAGAAGCAGATGTGATGGAGTATGCAGTAAACTGTCATGTCATCACCTGGGAGCGGATCCTGAGTCATTTTGACATCTTCGCCCTGGGTCATTTTTGGGGTTGGGCTATGAAAGCTCTGCTCATCCGCAGCTACGGACTCTGCTGGACCATCAGCATCACATGGGAGCTCACCGAGCTGTTCTTCATGCACCTCCTGCCAAACTTTGCGGAGTGCTGGTGGGATCAGGTCATTCTCGATATCCTGTTGTGCAACGGTGGAGGGATTTGGCTTGGCATGACTGTGTGCCGCTTTCTGGAGATGCGCACCTACCGATGGGCCAGTATCAAggataTCCACAGCACCTCGGGAAAGCTGAAGCGGGCCGTTCTTCAGTTCACTCCGGCCAGCTGGACGTATGTGCGCTGGTTCGACCCCAAATCCTCCTTCCAGAGGGTGGCTGGAATCTACCTCTTCATGATAGTATGGCAGCTCACAGAGTTGAACACCTTTTTCCTGAAGCACATCTTCGTGTTTCAGGCCTCTCATCCTCTCAGCTGGTGCCGGATCCTCTTCATTGGGATCATCACTGCTCCTACAGTGCGGCAGTACTACGCTTATGTGACAGACACACAGTGCAAAAGAGTTGGAACACAGTGTTGGGTGTTTGGGGCCATTGCTTTCCTGGAGGCTCTGGCTTGCATCAAATTCGGACATGATTTGTTCTCTAACACACAAGCTCTGTATGTTGTCTTTTGGCTTTTGTGTCTGGCGTTCATTACATTTCTCTGTCTGTATGGGATGGTTTGGTACGAGCAAAATTATGGGAAGAAACTGAAGGTAAATAAAcAGAGGAGCTCCAGTAGCAACTCCAGCTCATCACGTAGAAGAAAAGGAGGAAAACACAAAACCGCCAATGGAACCAGTGGCAAGAAGTGA
>TCONS_00029631
GGCATATTGTCCGTTTGTTGCGAGGATCTGGCAACCCTGGCTGTAGGCGCGACTGAATCAAGCCGCAGAAGTTCGCTGTGTTTGGGCTAGAGCAGTGAGTGATCCAGCATGGCGCCCAGTCAGGGCTCTAGGATGCTTAGTAAAGATGATGCTGATTATAAACTTCACTTTAGGATGATAAACGAGCAGCAAGTGGAGGACATCACTATTGACTTCTTCTACAAACCGCACACCATAACTTTACTAACGTTCACCGTCGTCAGCATAATGTACTTTGCTTTCACCAGG

Function

symbol description
ptdss1b Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to act upstream of or within phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Lenz-Majewski hyperostotic dwarfism. Orthologous to human PTDSS1 (phosphatidylserine synthase 1).

GO:

id name namespace
GO:0006659 phosphatidylserine biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-18 Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to act upstream of or within phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Lenz-Majewski hyperostotic dwarfism. Orthologous to human PTDSS1 (phosphatidylserine synthase 1).

Ensembl:

ensembl_id ENSDARG00000098729 ENSDARG00000102114

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029629 False 1854 mRNA 0.45 12 46066889 46088429
TCONS_00029630 False 1341 mRNA 0.50 12 46067527 46091497
TCONS_00029631 True 288 mRNA 0.48 1 46091318 46091605

Neighbor

gene id symbol gene type direction distance location
XLOC_015042 nup153 coding downstream 7926 46019313 ~ 46058963 (-)
XLOC_015041 krit1 coding downstream 48737 45991054 ~ 46018152 (-)
XLOC_015040 si:ch211-153f2.3 coding downstream 80900 45983647 ~ 45985989 (-)
XLOC_015039 eif3hb coding downstream 106698 45856171 ~ 45960191 (-)
XLOC_015038 NA coding downstream 376474 45689237 ~ 45690415 (-)
XLOC_015044 si:ch1073-228h2.2 coding upstream 126494 46218099 ~ 46219035 (-)
XLOC_015045 NA coding upstream 321008 46412613 ~ 46420558 (-)
XLOC_015046 ext1b coding upstream 329744 46421349 ~ 46566430 (-)
XLOC_015047 NA coding upstream 399978 46491583 ~ 46492033 (-)
XLOC_015048 SAMD12 coding upstream 632606 46724211 ~ 46764361 (-)
XLOC_014711 CR382300.3 misc downstream 26338134 19728690 ~ 19728755 (-)
XLOC_015036 FP340497.1 non-coding downstream 822181 45157502 ~ 45244708 (-)
XLOC_015035 NA non-coding downstream 1059832 45003801 ~ 45007057 (-)
XLOC_015031 NA non-coding downstream 2165837 43897940 ~ 43901052 (-)
XLOC_015028 NA non-coding downstream 2355596 43704915 ~ 43711293 (-)
XLOC_015051 NA non-coding upstream 907656 46999261 ~ 47173408 (-)
XLOC_015054 CU929178.2 non-coding upstream 1308584 47400189 ~ 47400307 (-)
XLOC_015055 CU929178.1 non-coding upstream 1323985 47415590 ~ 47416405 (-)

Expression


Co-expression Network