XLOC_015049 (abrab)


Basic Information

Item Value
gene id XLOC_015049
gene name abrab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46768266 ~ 46777963 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029636
ATGTCAGCAAGGAAGCCTTCAGCGAACAAGAACATTAAAAAGCTGCGTACTATAAGCATGGTGTGCAGCTTAACGCGGAGCTGGCAGCAATGGGTGAGCGAAAATGAAGATAAACAGTCCAGCGAGCCCAGCGGATGGGCACCATGTTACGCAGGAGATCCCAAAGATGATAAAAAAGAAGCAGCAAAGATTAAACTCTCTCAAAAAGCCCTCCAAACCACTACAAGTGAGAATAAGGATAACGGGGAGCCCGCCGGAGAGTCGCGCATCAAAACCACACCTGTTGTAAAAACTGTGACGAGGGACGTTCAGGAAAGGAGTGCAGGAATTGACTTTTTGACTAAACGTATCTGTAAGGACCCGGAGACGGATGAACTGGACAAGATGTTGAGTAAGAAAGGGTCTCCAACACGCCGCCGGAAATGCTCTAATATGGTTTCGGAGCTGACGCGGGGCTGGAAGGAAATGGAAAAGGAGAAAAAGCAGGATCATGGGGATAATGAGGATACAGGAACCAATCAGGAGGAGTCCGAGAATAACAGGAGCAATGAACATACAGAGTCTGCAGTCGCAATCAAGAGGTCCTCTGTTCCTGGGGGCAAAAAGGACATCGAGGATGCCAACAAAATAAACAACTTGTCCAAGAAATACAGCACTGTGGGCAACTTAAAAAGCCGCTGGCAAAACTGGGCCTCAGAGCACACCATCAATCAGAAGCTGAACCCCTTCAGTGAGGATTTTGACTATGAATATTCAATGTCGACACGTCTGCACAAGGGCGAGGAGGGATACGGGAGACCGAAAGAGGGCAGTAAAACTGCAGAAAGGGCCAAACGTGCAGAAAAACACATCCACCGTGAGATAGACGATATGTGTTTCGTCATCAGGACCATGGCGGACCCCGATCCAGACGGATACACCAGAGTGACATTTGGAGAGCTGTTCGACAGATACGTGCGGATCTCCGATAAAGTCGTGGGAATATTAATGAGAGCCCGGAAGCATGGAAAAGTGGCTTTTGAAGGGGAAATGCTATGGCAGGGTCAAGATGATGATGTCATTATTACTCTGCTAATATAGTCTTCATTCCTCATTCTTCATGCATAGGAACAAATGTTGCTATTGGGTAAATACAgaaggacttttcattttcaataacCTGTTGTTATGCTGAGAAACGAACCCCTGCCATAAAATGCACCCCCTCGGAAATGTGCAACTTAAATTGATAcatagggtgtcacggtggcacagtgggtagcactgttacctcacagcaagaaggtcgctggttcaagccccggctgggtcagttggcatttctgtgtagagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctccggtttccctcacaagtccaaagacatgcacaataggagaattgggtaagctaaattgtctatagtgtatgtgtgtgaatgggcatgtatgggtgtttcccagtgatgggttgcagctggaagggcatcctctgcgtaaaacatgccggataatttggcggttcattccgctgtggcaacctgagattaataaagagactaagccgaaattgTACAGTACTGTACAGCTTGCAAGTTTACAGACAGAGTTTTCTGAGCTCTCTcagctcatgtgtgtgtgtgtgtgtgtgtgcaggtacaTGTGGTTTGCAGGGACACAAAGTTGTATAATGAAATGGATCAGACTTTGTTGTACTCTTTTAGGTCggtgtgtccttgtaattcaaaacgcTTAAAAATATGCTTTATTGGGGTCTTTTGATATTAAATTTTTGGGTTGGGTTTTGGGGTTGGGCCatgtaataagtgtgtgtgtgttgttgtgtgtgcaCACTTTGCATGAGATGGCATGTTTAATGCATTGGTGTGAACACGTAGTAAGTACTTAAATAAGAAACTGCTTAAATGATTcagattttgtttgttgtttctaACTATTGCACTGTACAGTAAAGTTGAACAGGGCAGCTTTGGGAGTTCATTATTATTCGTACTGTACAGTAAGTGACACACAGTGTGTAATACTATAAGTTATCCAGAAGAGGGAGCAGTGCACCAACACCAGCGTTTTCCCTTTGCCATGCATTAGCAGGTATTATGAAACTGGATCTCTGAATTTAGTACATTTTGTACTTTTAAGAAAAAGCAAATATTTGAGCAAAACAgacagtgtttgtgttttttttaaagtattatagTCTACACTCTaaaaacacagggttaaaaactacccaaattgggttgtttttaatCCTTCTGCTTTGTAAATATGGGACCGAACACATCAGgggttaaattaacccaagtaattgggttattatttttaaccctaTAAATTAAGGCTTTCTACCCAATAATTGTGTAACCTCGAGGAGTGACATAGACAACTGAAGGTAAGATCCaaaaatgcaggtttaatcatcgtcaggcaagcaaaggtcaacaGGTATAAACAGatatgtgtaatgtaatgtaaaaaatgtaatgtaatgtgtatttgtatagcgcatttattgtgtatggccatacacccaaagcgcttcacaatcatgaggggggtctctccacaccaccaccggtgtgcagcatccacttggatgatgcgacggcagccacaggacaacggcgccagtgcgctcaccacacaccagctattggtggagtggagagacagtgatagagccaattcggtggaaggggatgattgggaggccatgatcgtaagggccgatagagggactttggccaggacaccggggttacacccctgctctttcacgagaagtgccatgggatttttaatgaccacagagagtcaggacctcggtttaacgtctcatccgaaagacggcgcccactgacagtttagtgtccccttcacttttactggggcattaggactcacgcagaccacaggttgagcgccccctgctggcctcactaacaccacttccaacagcaacctggtgttccctagtggtctcccatccaggtactgaccaggctcagccctgcttagcttcagtgagtaaccggtcttgggctgcagggtgacatggcagTGGCCATGTGGCTGTGTAcgtcaggggtcggcaacccaaaatgttgaaagagccaaaTTGGaccaagaaaacaaaaaacaaatatgtctggagccacaaaaaatgtaaagccttatataagccttataatgaaggaaacacatgctgtatctatagtagctatattagcctactataaaaatgactaaattggctacaaatacataatgagcttttatgattaaatagccactgaaatcaggtggttggtgtttattttgttgtcattaaaacacttcagcacagcctcttgtcttttagtgttattaatttgatcatttcttcttgcggcccatcagagttcacatacctgcaaaaaagcgcattgaatatcggtcacatcacaggcaattgagtatgctggcactgaattaatgtccttggtttgctgatcggtgatgttacctaCCATTTTAATAGCCttttccttcactgtcttagcggagagaggtatatctttatttttttgtattatcttggttttgtttttaaagtttgcaaataggtgttctaatatgtcATACCATCTttgaacggttttccatgctttattatctcctggtttgtttacaacagccacctgcctagCATCccaccctgctgatagaaacgtgtgtcgcaggctatgacgcaaatcttcgttgacagaaatgttgaaattaaatattaattctacacactttgacaacatttgaaaacgttaaaaatgtttgtcctcctatagaaatcatattaaaacaaaaaaatatattaacctcccccatctttttgcattttcaaacatttttgaaaaagctccagggagccacaagagcagcgctaaagagccgcatgtggctctagagccgcgggttgctgacccctggtgTAGGTAGTAAAGAATCGTAACCGGTAACAAGCAAGAGGTCAAAAaggcaggcagggagaacaagaatACAACGCTAGgttaaaaacacaggaaaactaGACAGGAATAATGCTTTGTAATGTCATctatacagctaacaagactcggcaaactgaatgggtgagtgtgtggcttaaatagtgtgtgcaatcagtctctgacaatcctcaggtggtgtgaatgtaatcagtttagatgaggaagcatgtgtgagtgtgaccggagtgcatgtatgaaaatgtagtccataaatggcggatttgtagtccatggttattgttaGTGCAAACCAGCAATCTTATGGGatatgatcgctggtaatcgtgacaaattggttatttttacttaaataataggtTAATTTAATCCAAAAATGCCTGCGCAAAGATGACCcagcaattgtgttgttttgactcGGCATCACTGAGGTACGGTGGGGGATATGCAGCTTTGCTTACAGGTGTACAAAAGGTAGTAAGAAATTATTTAATTCAGAAAGTTCTGACTAAGGGCTGCTATGAGCATGAATCTCATTTTAATCATCTGAAAACGCAAGGAATCTGTGTTTATATTacactattttcattgcatttaaacaaattagtacACAATATGTGGTATCCCAGTCAGCCCCTGCTGTGAGTTGATTTGACCCAAAGAATTGGGTTGAAACTACCCAAGACTCTGAAAATAACCCCCAAAACTTACCCAAATGCCTCAACCCAAGATTTGGGTAGAAAAAATAACCCcatattttttagagtgcataCATAATCCCACATACTCATTCACAGATATTGTCTTTCAAGGTTTTGAGGACATTTGGAAGTTGTCCACTTTCAAGAAGATACAAATCATTAGTCTTTCCAGGATGATcatataaaacaaaactattttatcTTTTATAATATGTAACATTCACAACAACACATGCAGCAATGTTACAGTATGAACTGCTAGGCTCATTTGTAATGAGTTTTTGCTTTTGTGAACAGTAATTTGTTACAGCAAAGTGAGCAAGCTGATAAGTAATGCCAAGCATTCCATCATTTGGTTCAGACTTTTGTCTGGAAACCAGAAAGACAAGAGCCGACTGTAATCTACAGGAACGCAGATCAAAAGTCATTACAGGAAGGGCTGCATCATGAGATAAAAATGTGGTGTAAAACTCTACCTGGAACTGTCGGAAATATGAGctgttttttaaatgtgggccggtcagtttttttattttatttgtttattttttatgcatcttttttacatgcaggcagcttttatctcttccAAGATGTGAGTATGATGATGAcgataatactactaataataaatgttaagcatttggcccaatcggcactcacatacattaaatgtttaaatatctattaaatatgGTACTGCTGATTTTATTTCACCATTTGTACACCAAATGCATGTTATTAttatggaagggcatccgctgcgtaaaaacgtgctggataagttggcggttcattctgctgtggcaacccctgattaataaagggactaagccgacaagaaaatgaatgaatgaatgaatgaataaatgaatgaatgaatgaataaataaatgaatgaatggatgtatgaatgaatgaatgaatgaaataatttagCATGATTGTGTTCAGA
>TCONS_00029637
CAGGAATCACAACAAGGTGCACTTTAAAAGCCAAGCAGAGGATTCGAATGAGGAAGGAAATCATTGGAGatacacacactgTGATATCGATGCACAAAGGGTATATTGCTCAGTCCTAACTGGAGGTAAACAATGTCAGCAAGGAAGCCTTCAGCGAACAAGAACATTAAAAAGCTGCGTACTATAAGCATGGTGTGCAGCTTAACGCGGAGCTGGCAGCAATGGGTGAGCGAAAATGAAGATAAACAGTCCAGCGAGCCCAGCGGATGGGCACCATGTTACGCAGGAGATCCCAAAGATGATAAAAAAGAAGCAGCAAAGATTAAACTCTCTCAAAAAGCCCTCCAAACCACTACAAGTGAGAATAAGGATAACGGGGAGCCCGCCGGAGAGTCGCGCATCAAAACCACACCTGTTGTAAAAACTGTGACGAGGGACGTTCAGGAAAGGAGTGCAGGAATTGACTTTTTGACTAAACGTATCTGTAAGGACCCGGAGACGGATGAACTGGACAAGATGTTGAGTAAGAAAGGGTCTCCAACACGCCGCCGGAAATGCTCTAATATGGTTTCGGAGCTGACGCGGGGCTGGAAGGAAATGGAAAAGGAGAAAAAGCAGGATCATGGGGATAATGAGGATACAGGAACCAATCAGGAGGAGTCCGAGAATAACAGGAGCAATGAACATACAGAGTCTGCAGTCGCAATCAAGAGGTCCTCTGTTCCTGGGGGCAAAAAGGACATCGAGGATGCCAACAAAATAAACAACTTGTCCAAGAAATACAGCACTGTGGGCAACTTAAAAAGCCGCTGGCAAAACTGGGCCTCAGAGCACACCATCAATCAGAAGCTGAACCCCTTCAGTGAGGATTTTGACTATGAATATTCAATGTCGACACGTCTGCACAAGGGCGAGGAGGGATACGGGAGACCGAAAGAGGGCAGTAAAACTGCAGAAAGGGCCAAACGTGCAGAAAAACACATCCACCGTGAGATAGACGATATGTGTTTCGTCATCAGGACCATGGCGGACCCCGATCCAGACGGATACACCAGAGTGACATTTGGAGAGCTGTTCGACAGATACGTGCGGATCTCCGATAAAGTCGTGGGAATATTAATGAGAGCCCGGAAGCATGGAAAAGTGGCTTTTGAAGGGGAAATGCTATGGCAGGGTCAAGATGATGATGTCATTATTACTCTGCTAATATAGTCTTCATTCCTCATTCTTCATGCATAGGAACAAATGTTGCTATTGGGTAAATACAgaaggacttttcattttcaataacCTGTTGTTATGCTGAGAAACGAACCCCTGCCATAAAATGCACCCCCTCGGAAATGTGCAACTTAAATTGATAcatagggtgtcacggtggcacagtgggtagcactgttacctcacagcaagaaggtcgctggttcaagccccggctgggtcagttggcatttctgtgtagagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctccggtttccctcacaagtccaaagacatgcacaataggagaattgggtaagctaaattgtctatagtgtatgtgtgtgaatgggcatgtatgggtgtttcccagtgatgggttgcagctggaagggcatcctctgcgtaaaacatgccggataatttggcggttcattccgctgtggcaacctgagattaataaagagactaagccgaaattgTACAGTACTGTACAGCTTGCAAGTTTACAGACAGAGTTTTCTGAGCTCTCTcagctcatgtgtgtgtgtgtgtgtgtgtgcaggtacaTGTGGTTTGCAGGGACACAAAGTTGTATAATGAAATGGATCAGACTTTGTTGTACTCTTTTAGGTCggtgtgtccttgtaattcaaaacgcTTAAAAATATGCTTTATTGGGGTCTTTTGATATTAAATTTTTGGGTTGGGTTTTGGGGTTGGGCCatgtaataagtgtgtgtgtgttgttgtgtgtgcaCACTTTGCATGAGATGGCATGTTTAATGCATTGGTGTGAACACGTAGTAAGTACTTAAATAAGAAACTGCTTAAATGA

Function

symbol description
abrab Predicted to enable actin binding activity. Acts upstream of or within pronephric glomerulus morphogenesis. Predicted to be active in sarcomere. Orthologous to human ABRA (actin binding Rho activating protein).

GO:

id name namespace
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0030017 sarcomere cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-7 Predicted to enable actin binding activity. Acts upstream of or within pronephric glomerulus morphogenesis. Predicted to be active in sarcomere. Orthologous to human ABRA (actin binding Rho activating protein).

Ensembl:

ensembl_id ENSDARG00000033854

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029636 False 5697 mRNA 0.42 2 46768266 46775562
TCONS_00029637 True 2077 mRNA 0.46 3 46772018 46777963

Neighbor

gene id symbol gene type direction distance location
XLOC_015048 SAMD12 coding downstream 3905 46724211 ~ 46764361 (-)
XLOC_015046 ext1b coding downstream 201836 46421349 ~ 46566430 (-)
XLOC_015047 NA coding downstream 276233 46491583 ~ 46492033 (-)
XLOC_015045 NA coding downstream 347708 46412613 ~ 46420558 (-)
XLOC_015044 si:ch1073-228h2.2 coding downstream 549231 46218099 ~ 46219035 (-)
XLOC_015050 angpt1 coding upstream 34309 46812272 ~ 46957968 (-)
XLOC_015051 NA coding upstream 221298 46999261 ~ 47173408 (-)
XLOC_015052 sdc2 coding upstream 413042 47191005 ~ 47276297 (-)
XLOC_015053 CU138512.2 coding upstream 507810 47285773 ~ 47323267 (-)
XLOC_015054 CU929178.2 coding upstream 622226 47400189 ~ 47400307 (-)
XLOC_014711 CR382300.3 misc downstream 27039511 19728690 ~ 19728755 (-)
XLOC_015038 NA non-coding downstream 1077851 45689237 ~ 45690415 (-)
XLOC_015036 FP340497.1 non-coding downstream 1523558 45157502 ~ 45244708 (-)
XLOC_015035 NA non-coding downstream 1761209 45003801 ~ 45007057 (-)
XLOC_015055 CU929178.1 non-coding upstream 637627 47415590 ~ 47416405 (-)
XLOC_015061 CU695215.1 non-coding upstream 789750 47567713 ~ 47567848 (-)
XLOC_015063 NA non-coding upstream 982934 47760897 ~ 47761491 (-)

Expression


Co-expression Network