XLOC_015051



Basic Information


Item Value
gene id XLOC_015051
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46999261 ~ 47173408 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00030350
TTGGTCCGTTTCTGTTACTCCCGCCCACAATGGGTGTTTAGTTTACTAGGCAACTAAATTAATCATCGAGTATTTTGTTGAATAGTTTAAAAAAGCAGAAGTAAATATTAATTAGTCGACATGTAAATAGCTTAAACTATAACTTCTAAATGTACAACACCAGGAGAGCAGCTCCAGCGATGAAATGGAGCACCTGTGGCCGCTAATGAGGTTTCGTCATCAACCGTCGTCTGCTAATTAGCGAACTAAAGGACTCTGAAGCACTGATGTTTATtataacagaaatgttttttttcttcgcGAAACACGAGACTAAGAAGAGCCAAAATAAACGGACAGGATGGTTTTAAAGAGTGTAAGAAGACGGAATATACACGGACTGACCTGATCTCTAACAGACAGCCATAATCAAGCTAACGTTAATGTTTGATTAGCTGATGCTAACCGGAGACTTTCCTTCATATATTTCTTCGTGTTTTGATCAACGCATCATCATCGTCTCAGGCTGATGGAGGACGAGTAAAAAGTTCTTTATCTACCTCCATcacttcatcatcttcatcatcctcactGGCAATGTCCACCAAAACAATTCTCCATTTTGGCTCCAAATGAACTGCAGGCGGAACCATCGAGGAAGAAGAGCTCTGAAGGAGAAGGTCTTCATCTGTTGCTGAAGGACGTCTAATGGAGCCGTAAAGTTGGTCGCCGCTCACTGAGCATGTGCACAAATATTTGCACACGAGTGAAGGACGGCAGAAGACACACACTCGTGTCCAGCGCGGCTCGTCCGAAAGCAGACTGTGAGAAAAGCACAGAGAGTCTCGTCTGGCATTTTTCACATTCCTGCTGTTCCCTGCTCATCAAAGACGTCTTGAGCTGACGATGaactctgtcacacacacacagatgaagacaaatagatacacacacacacacacacacagagacaagcAGAGAgaggaatacacacacacacacacacacacacacacacacacaaagacagagaCAAATAGATACACATCCAAATAAACATACACAGACCCACACACTCAGAGAGAGATGGAccaaactctcacacacacacacatacatagacagacagacagacgcacacacatatagtacacagacagaaagacagacaaacatacacacaaagatAGACACATGCaggcaggggcgcaactgcacatttactcaGATGTATGCGAGTTCAAgttttgccccccccccccccatattaATTTCCTCATCAACATGTCGAAGTTCTGAAcgcaactgaaatagtatgaagtagtaaaagtataattacattaagcatgctAAGTCACAAAG
>TCONS_00029639
TtataacagaaatgttttttttcttcgcGAAACACGAGACTAAGAAGAGCCAAAATAAACGGACAGGATGGTTTTAAAGAGTGTAAGAAGACGGAATATACACGGACTGACCTGATCTCTAACAGACAGCCATAATCAAGCTAACGTTAATGTTTGATTAGCTGATGCTAACCGGAGACTTTCCTTCATATATTTCTTCGTGTTTTGATCAACGCATCATCATCGTCTCAGGCTGATGGAGGACGAGTAAAAAGTTCTTTATCTACCTCCATcacttcatcatcttcatcatcctcactGGCAATGTCCACCAAAACAATTCTCCATTTTGGCTCCAAATGAACTGCAGGCGGAACCATCGAGGAAGAAGAGCTCTGAAGGAGAAGGTCTTCATCTGTTGCTGAAG
>TCONS_00030351
cTCCTCCACGCTCGTCAAAATTAAAAGTGTAATATGATTGGTCCGTTTCTGTTACTCCCGCCCACAATGGGTGTTTAGTTTACTAGGCAACTAAATTAATCATCGAGTATTTTGTTGAATAGTTTAAAAAAGCAGAAGTAAATATTAATTAGTCGACATGTAAATAGCTTAAACTATAACTTCTAAATGTACAACACCAGGAGAGCAGCTCCAGCGATGAAATGGAGCACCTGTGGCCGCTAATGAGGTTTCGTCATCAACCGTCGTCTGCTAATTAGCGAACTAAAGGACTCTGAAGCACTGATGTTTATtataacagaaatgttttttttcttcgcGAAACACGAGACTAAGAAGAGCCAAAATAAACGGACAGGATGGTTTTAAAGAGTGTAAGAAGACGGAATATACACGGACTGACCTGATCTCTAACAGACAGCCATAATCAAGCTAACGTTAATGTTTGATTAGCTGATGCTAACCGGAGACTTTCCTTCATATATTTCTTCGTGTTTTGATCAACGCATCATCATCGTCTCAGGCTGATGGAGGACGAGTAAAAACATGTGTGGAGTCGcgt

Function


GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0034249 negative regulation of cellular amide metabolic process biological_process
GO:0017148 negative regulation of translation biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0016442 RISC complex cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000096265

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00030350 False 1341 lncRNA 0.43 3 46999261 47173371
TCONS_00029639 False 406 lncRNA 0.41 2 47123688 47173098
TCONS_00030351 True 580 lncRNA 0.39 2 47145193 47173408

Neighbor


gene id symbol gene type direction distance location
XLOC_015050 angpt1 coding downstream 41293 46812272 ~ 46957968 (-)
XLOC_015049 abrab coding downstream 221298 46768266 ~ 46777963 (-)
XLOC_015048 SAMD12 coding downstream 234900 46724211 ~ 46764361 (-)
XLOC_015046 ext1b coding downstream 432831 46421349 ~ 46566430 (-)
XLOC_015047 NA coding downstream 507228 46491583 ~ 46492033 (-)
XLOC_015052 sdc2 coding upstream 17597 47191005 ~ 47276297 (-)
XLOC_015053 CU138512.2 coding upstream 112365 47285773 ~ 47323267 (-)
XLOC_015054 CU929178.2 coding upstream 226781 47400189 ~ 47400307 (-)
XLOC_015055 CU929178.1 coding upstream 242182 47415590 ~ 47416405 (-)
XLOC_015056 tfap2e coding upstream 256314 47429722 ~ 47456787 (-)
XLOC_014711 CR382300.3 misc downstream 27270506 19728690 ~ 19728755 (-)
XLOC_015045 NA non-coding downstream 578703 46412613 ~ 46420558 (-)
XLOC_015038 NA non-coding downstream 1308846 45689237 ~ 45690415 (-)
XLOC_015036 FP340497.1 non-coding downstream 1754553 45157502 ~ 45244708 (-)
XLOC_015035 NA non-coding downstream 1992204 45003801 ~ 45007057 (-)
XLOC_015061 CU695215.1 non-coding upstream 394305 47567713 ~ 47567848 (-)
XLOC_015063 NA non-coding upstream 587489 47760897 ~ 47761491 (-)
XLOC_015066 NA non-coding upstream 758490 47931898 ~ 47932934 (-)

Expression



Co-expression Network