XLOC_015064 (cdca8)


Basic Information

Item Value
gene id XLOC_015064
gene name cdca8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47771659 ~ 47782916 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029662
GTTGATTATGGCTCCCAGAAAGCGCACTCAGAATGCTAAAAGCAAGAAGAATCCCAAAGCGCCCAAACTTGAGGCTTTTCTGCTGGATTTTGATGATGAAGTTCACACCATTGTGGAAAGACTGAAGGAGAAGACTAATAATCTGCTGAAAGATGCAGATAATCTTTATAAAACTGCTCTCATTAAACTGCCCATGGCGGTGAGGAAGATGAACTGGATCGAGTACTGCAatCTAGAGAAGCCAAAGTCACCGGTGGATGATTCAAAGGTGAGGGAGGAAGCTGCCCAGGTAGAGCTTGCGATTGCTGGGAATCATACTATTCCTAAAGTTGCtgcaaaagAAGCCAAGAGCAGCACAAACTCAGAAGATGAAAACATGGCACCGCTGAAGTCTACAATGAAGAAGAAGAAGGCCTCAAAGAAAGCTCCTTCAACGTCCAAGAAGCCCAGAGCTCTGTCCATCAGCAAACAGGGCGGCACCATCCAAAGGACTACAAGGAAGCCTCTGATCACTCCTGCTAGAAGTTTCCTGGACTCTTCAATCATCGGTGCCACACCGCTCATCACGCCGCGCTTTGACCCCAGattGCCCAAGACTCCAGCATTGAGATCAGCTCTTCACAGAGAGAAGGTTTACAGCATGTCAGTGAATGGATCTCCTCTGTCTGCCGGTGGAGAAGACATCGTCATCAGTGTCCCGATCGGAAACGGAGAGTGTATTCAGCTGCTGGCCAGTGAGATGGACTCTGTGGATCTGAGTCAGCTGGACGAGAAAGCTCTTCGCAGTATCAGAAACCTGCAGAATCGCCTGATGACGCTCTGTGGAAGCTCAAAATGAACTCTCTCCAGTTTTGTACAGCGGCCTGCGATGTCTTTTCTCTTCCAGTAGTCATTGTGTTAATCCCATTTTTATTCTTGTGCTGTACCCGTCTGTGGCTTTTATCATTTTTATGCTCATGAGCTTTTACAAAGGAGAACATGTAAATACGTTTAGCTCCTCTTCATAATCTGTGTTTTACTGCCTTCATGTAAATATGACCCTTAAAAATAGACAATTTCCACATCTCCGCTTTCTCTCGCCTGTTTCTTCTCATCTAAGAACATCAGTATGAGCTGCTGTTTTCCTGCTGTTCATGTCATTTCTGCAACATCAGGCAATTTTAAAGTGTGTTTCAGGTAAAAGTCAGCAAATTGATTTAATTGTAGGTATTTAAGTTCATTTGTCCTGGAATATCAGTGATTTGTGCCAAATGGCAGAAGTCTTTAGCATTTGTCTTGACATAAGTCTGAAGTTTTTGTCATAATCGTcttcaaattgttttaaatagtttaaaataattttgacttggtgaaacttgCTGAAACCATAAAAATACACATGCAAATGTTTTTTCTGGGAACATTTTTATCgcataaaaatgcattatttttcctGTGGTTATGAGCCTGCAGAGCCAGACAGcacctgttctgttctgttctgcaGTGTTGTTTGCCCTCTGGTggctctgctgctgctgctgttaaATGTGGACGGATGTCAAGATGAAAATGAAGTTGGCTTTAATATTATGAAAAGGAGAAGCTGCCAGTTCTTCTGGCTGCTGTTTGAGGCCAGTTGGACAGAAAATCTGCTGAATTATTGCAGATATCTAAAGTTTAGAGAATTATTCATGCCAAATGCAGAGTCATCGAGCTCTGAAAAAGTTAATCTGTTTGTATCATGCATGATTATCAGAATACAGACACTAAATGACAATAGTACAGGTACATAAGcatttaaactaaaaatatagATGTATTTTTTCAGCTATATTCAGAACAGAAATcatgtcatttaaaaagaaaaaatctaaatttaagcaTCACAGTCAGTCCGTGAATCACTCAATATTTGTCATTAAATATTGTTTCCACCATCATCCTTCAAAACAGGATTCACACCTTTATcagcatttaaacacatttagaatgattgatttgatttattgtattataaatgtgttgatcATGTTGCTGTATAATTGAGATTGGCCCTGTCTTATGATTAGGGCCTGAAAGCATCTGCAGACATATTTTTAGattttctgtggagaattttgttaaaaatctgcagatttatgtggaatgatttttgaAGTATCATAGCTAAATTAAActtaatataatgaataaaaataatactttgtTTACAATACGAAATAAAGCAAGTGTCATAATATATCCACTAAACAAAGACAAAGTATTACGTTACACACTGTATTGTCAATAAATCATGAATAGTtatatattagtcaataatattactgaaagcaatttaaaaactaaataaatatgaatttacacacatttactcaagtttataaatagaataaatgatgggctaaaaatatgCAGAATTCTGCGCATGCAGTTTATGGGTGTGTTTACTTATGATCAATCAAATCAGgataattataattaaacattataatataaaatattatacatgtatttatacacacacatttctgcttacatcttatataatttatttagcaaataaaatcacttttattgtcatatcatcagcagcatgtgtgtaTGATAAGTGAAAAGCAAAAATACAACGACACACAActgcatactcccaaaaaaataaataaataaaaaaactggttactaatattttgtgtgtgtgtgtgtgtatgtatgtgtatatatatatatatatttttttttatatatatatatatatatatatatatatatatatatatatatatatatatttattattattattattatcataatagtGTGTCCAGCATAAATGAGTTGATCTCtcttttacagtaatattttctccTGAATGCTGTACAGTAATATATATCTGTCcagatacattagattagtcggtGGCAAAGCTGATGAACCAACAAACACTGAAGATCACAGTACAGAAATTATGCACCGTAGTTAATATGTTGGaggaatatatatttaaaaatataataaacagaaaaaatcaagagaaacaaatatatatataaatatagttaaagttttctagttatttttttgtgttgcaATAACCATTCCTAAAGATATTCattgaccaaactcttatttttgtaaatatatctgtttaataaaacagttttgttcaaatgcaccaaaatagtttgtctatattcactgagaacaCATTGGAC
>TCONS_00029663
GCTGATGCGAAGGGTTCAATTTGAAAAGGGTTTTCCTTCTAACCGCTGACTGAGAGACACGGTTCAGACGTGGAAAGAGTTGATTATGGCTCCCAGAAAGCGCACTCAGAATGCTAAAAGCAAGAAGAATCCCAAAGCGCCCAAACTTGAGGCTTTTCTGCTGGATTTTGATGATGAAGTTCACACCATTGTGGAAAGACTGAAGGAGAAGACTAATAATCTGCTGAAAGATGCAGATAATCTTTATAAAACTGCTCTCATTAAACTGCCCATGGCGGTGAGGAAGATGAACTGGATCGAGTACTGCAatCTAGAGAAGCCAAAGTCACCGGTGGATGATTCAAAGGTGAGGGAGGAAGCTGCCCAGGTAGAGCTTGCGATTGCTGGGAATCATACTATTCCTAAAGTTGCtgcaaaagAAGCCAAGAGCAGCACAAACTCAGAAGATGAAAACATGGCACCGCTGAAGTCTACAATGAAGAAGAAGAAGGCCTCAAAGAAAGCTCCTTCAACGTCCAAGAAGCCCAGAGCTCTGTCCATCAGCAAACAGGGCGGCACCATCCAAAGGACTACAAGGAAGCCTCTGATCACTCCTGCTAGAAGTTTCCTGGACTCTTCAATCATCGGTGCCACACCGCTCATCACGCCGCGCTTTGACCCCAGattGCCCAAGACTCCAGCATTGAGATCAGCTCTTCACAGAGAGAAGGTTTACAGCATGTCAGTGAATGGATCTCCTCTGTCTGCCGGTGGAGAAGACATCGTCATCAGTGTCCCGATCGGAAACGGAGAGTGTATTCAGCTGCTGGCCAGTGAGATGGACTCTGTGGATCTGAGTCAGCTGGACGAGAAAGCTCTTCGCAGTATCAGAAACCTGCAGAATCGCCTGATGACGCTCTGTGGAAGCTCAAAATGAACTCTCTCCAGTTTTGTACAGCGGCCTGCGATGTCTTTTCTCTTCCAGTAGTCATTGTGTTAATCCCATTTTTATTCTTGTGCTGTACCCGTCTGTGGCTTTTATCATTTTTATGCTCATGAGCTTTTACAAAGGAGAACATGTAAATACGTTTAGCTCCTCTTCATAATCTGTGTTTTACTGCCTTCATGTAAATATGACCCTTAAAAATAGACAATTTCCACATCTCCGCTTTCTCTCGCCTGTTTCTTCTCATCTAAGAACATCAGTATGAGCTGCTGTTTTCCTGCTGTTCATGTCATTTCTGCAACATCAGGCAATTTTAAAGTGTGTTTCAGGTAAAAGTCAGCAAATTGATTTAATTGTAGGTATTTAAGTTCATTTGTCCTGGAATATCAGTGATTTGTGCCAAATGGCAGAAGTCTTTAGCATTTGTCTTGACATAAGTCTGAAGTTTTTGTCATAATCGTcttcaaattgttttaaatagtttaaaataattttgacttggtgaaacttgCTGAAACCATAAAAATACACATGCAAATGTTTTTTCTGGGAACATTTTTATCgcataaaaatgcattatttttcctGTGGTTATGAGCCTGCAGAGCCAGACAGcacctgttctgttctgttctgcaGTGTTGTTTGCCCTCTGGTggctctgctgctgctgctgttaaATGTGGACGGATGTCAAGATGAAAATGAAGTTGGCTTTAATATTATGAAAAGGAGAAGCTGCCAGTTCTTCTGGCTGCTGTTTGAGGCCAGTTGGACAGAAAATCTGCTGAATTATTGCAGATATCTAAAGTTTAGAGAATTATTCATGCCAAATGCAGAGTCATCGAGCTCTGAAAAAGTTAATCTGTTTGTATCATGCATGATTATCAGAATACAGACACTAAATGACAATAGTACAGGTACATAAGcatttaaactaaaaatatagATGTATTTTTTCAGCTATATTCAGAACAGAAATcatgtcatt
>TCONS_00029800
TGTTTAATAGGATTAACATTGTTTCTGTCCTGATGGTGTTCAGAAGTGTCAGTTCAGGTCTGCTTTTGTCCACAGGACTACAAGGAAGCCTCTGATCACTCCTGCTAGAAGTTTCCTGGACTCTTCAATCATCGGTGCCACACCGCTCATCACGCCGCGCTTTGACCCCAGattGCCCAAGACTCCAGCATTGAGATCAGCTCTTCACAGAGAGAAGGTTTACAGCATGTCAGTGAATGGATCTCCTCTGTCTGCCGGTGGAGAAGACATCGTCATCAGTGTCCCGATCGGAAACGGAGAGTGTATTCAGCTGCTGGCCAGTGAGATGGACTCTGTGGATCTGAGTCAGCTGGACGAGAAAGCTCTTCGCAGTATCAGAAACCTGCAGAATCGCCTGATGACGCTCTGTGGAAGCTCAAAATGAACTCTCTCCAGTTTTGTACAGCGGCCTGCGATGTCTTTTCTCTTCCAGTAGTCATTGTGTTAATCCCATTTTTATTCTTGTGCTGTACCCGTCTGTGG

Function

symbol description
cdca8 Acts upstream of or within heart development. Predicted to be located in several cellular components, including chromosome; cytoskeleton; and nucleus. Predicted to be part of chromosome passenger complex. Predicted to be active in chromosome, centromeric region and spindle midzone. Is expressed in proliferative region. Orthologous to human CDCA8 (cell division cycle associated 8).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0032133 chromosome passenger complex cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041114-171 Acts upstream of or within heart development. Predicted to be located in several cellular components, including chromosome; cytoskeleton; and nucleus. Predicted to be part of chromosome passenger complex. Predicted to be active in chromosome, centromeric region and spindle midzone. Is expressed in proliferative region. Orthologous to human CDCA8 (cell division cycle associated 8).

Ensembl:

ensembl_id ENSDARG00000043137

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029662 False 3194 mRNA 0.35 10 47771659 47782586
TCONS_00029663 False 1916 mRNA 0.42 11 47773015 47782916
TCONS_00029800 True 522 lncRNA 0.49 4 47773917 47778637

Neighbor

gene id symbol gene type direction distance location
XLOC_015063 NA coding downstream 10168 47760897 ~ 47761491 (-)
XLOC_015062 CABZ01071972.1 coding downstream 183940 47578811 ~ 47587719 (-)
XLOC_015060 rrm2 coding downstream 199851 47564890 ~ 47571808 (-)
XLOC_015061 CU695215.1 coding downstream 203811 47567713 ~ 47567848 (-)
XLOC_015059 actc1a coding downstream 215703 47549568 ~ 47555956 (-)
XLOC_015065 ago4 coding upstream 17634 47800550 ~ 47832853 (-)
XLOC_015066 NA coding upstream 148982 47931898 ~ 47932934 (-)
XLOC_015067 ctnnb2 coding upstream 193000 47975916 ~ 47997424 (-)
XLOC_015068 zgc:158376 coding upstream 220775 48003691 ~ 48015928 (-)
XLOC_015069 NA coding upstream 234790 48017706 ~ 48024071 (-)
XLOC_014711 CR382300.3 misc downstream 28042904 19728690 ~ 19728755 (-)
XLOC_015055 CU929178.1 non-coding downstream 355254 47415590 ~ 47416405 (-)
XLOC_015054 CU929178.2 non-coding downstream 371352 47400189 ~ 47400307 (-)
XLOC_015051 NA non-coding downstream 598251 46999261 ~ 47173408 (-)
XLOC_015071 NA non-coding upstream 402382 48185298 ~ 48186157 (-)
XLOC_015072 NA non-coding upstream 454734 48237650 ~ 48241837 (-)
XLOC_015075 NA non-coding upstream 545632 48328548 ~ 48330301 (-)

Expression


Co-expression Network