XLOC_015065 (ago4)


Basic Information

Item Value
gene id XLOC_015065
gene name ago4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47800550 ~ 47832853 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029664
CACATCTACGCATCCCTTCCATTTCTTAAATTAGCCACCTTAAGCTTCGAGATACCGCCCCCAATTTCAGTGTCGGTACGGAGCCGCCAGGCCGGGACAGAGACGGAGAGAGAGCCCTCGGCCATGGAAGCGCTCGGACCCGGCCCGCCTGCCCCTACCTCCCTCTTCCAGCCACCGCGCCGGCCCGGCTTGGGTACGGTGGGGAAGCCGATTCGCCTGCTGGCCAATCACTTCCAGGTGCAGATCCCCAAGATCGACGTCTACCATTATGACATCGACATCAAACCTGAAAAACGGCCCCGCAGGGTCAACAGAGAGGTGGTGGACACAATGGTTAGACATTTTAAGATGCAGATCTTTGGGGACCGGCAGCCTGGATATGATGGAAAGAGGAACATGTACACGGCACATCCGCTACCCATCGGGAGGGACAGGGTGGATCTGGAGGTGACGCTGCCGGGTGAAGGGAAGGATCAGACTTTTAAGGTGTCTCTGCAGTGGGTGTCGGTGGTCAGTCTGCAGATGCTACTGGAAGCTCTGTCTGGTCACCTGAACGAGGTGCCGGAGGATTCAGTTCAGGCTCTGGACGTCATCACTCGTCACCTGCCTTCCATGCGGTACACTCCAGTAGGCCGGTCCTTCTTCTCTCCACCAGAGGGCTACTATCATCCACTGggaggagggagggaggtgtGGTTCGGTTTCCATCAGTCTGTCCGTCCTGCCATGTGGAACATGATGCTCAACATAGATGTGTCAGCAACAGCGTTTTACAGAGCTCAGCCTGTCATCGAATTCATGTGTGAGGTTTTGGACATCCAGAACATCAACGAGCAGACCAAACCCCTCACAGATTCACAACGTGTCAAGTTCACCAAGGAGATCCGAGGACTGAAAGTGGAGGTCACACACTGCGGCCAGATGAAGAGGAAGTACCGTGTGTGTAATGTCACGCGCCGCCCAGCCAGTCATCAGACGTTTCCTTTGCAGCTTGAGAATGGACAAGCTATGGAGTGCACCGTTGCCCAGTATTTCAAACAAAAGTACAGCCTGCAGCTCAAATACCCCCACCTGCCCTGCCTCCAGGTGGGACAGGAGCAGAAGCACACGTACCTTCCCCTGGAGGTTTGTAATATAGTGGCAGGACAGCGCTGCATAAAGAAACTAACAGATAATCAGACCTCCACCATGATCAAAGCTACGGCCCGCTCAGCCCCAGACAGACAGGAGGAGATCAGCCGACTGGTCAAAAGCAACAGTATGGTTGGCGGGCCCGACCCTTATCTGAAAGAGTTTGGCATTGTGGTGCACAATGACATGACCGAGGTGACAGGGCGGGTCCTCCCAGCGCCCATGCTGCAGTATGGGGGCCGGAATAAGACGGTGGCCACACCCAACCAGGGCGTCTGGGACATGAGGGGGAAGCAGTTTTATGCCGGAATAGAGATCAAGGTTTGGGCCGTGGCCTGCTTCGCCCCTCAGAAACAATGCAGAGAGGACCTGCTCAAgagttTCACTGACCAGCTGCGCAAGATTTCCAAGGATGCTGGGATGCCGATCCAAGGCCAGCCGTGCTTCTGCAAATACGCCCAGGGTGCAGACAGTGTGGAGCCCATGTTCAAGCATCTCAAGATGTCTTACGTGGGCCTGCAGCTCATCGTGGTCATCCTGCCCGGAAAAACACCTGTCTATGcggAGGTGAAGCGTGTGGGAGACACTCTCCTGGGAATGGCCACTCAGTGTGTTCAGGTGAAGAACGTGGTAAAAACGTCTCCTCAGACGCTCTCCAACCTCTGTCTGAAGATCAACGCCAAACTAGGAGGCATCAACAATGTGCTGGTGCCACATCAGAGGCCTTCTGTGTTCCAGCAGCCGGTGATCTTCTTGGGTGCGGATGTCACTCACCCTCCAGCGGGCGATGGGAAGAAGCCGTCCATCGCTGCAGTGGTAGGCAGTATGGACGGACACCCGAGCCGATACTGCGCCACCGTACGGGTGCAAACGTCCCGCCAGGATCTGTCCCAGGAGCAGCTCTTCAGCCAGGAGGTCATCCAGGATCTCACCAACATGGTGCGCGAGCTGCTCATTCAGTTCTACAAATCCACCCGATTCAAGCCCACGCGCATTATCTACTACCGCGGAGGAGTTTCTGAGGGCCAGATGAAGCAGGTGGCGTGGCCAGAGCTGATCGCCATCAGGAAAGCCTGCATCAGTCTAGAAGAGGATTACAGGCCGGGAATCACATACATCGTAGTGCAGAAACGCCACCACACTCGACTCTTCTGCTCCGACAAAGCCGAgaggGTTGGGAAGAGTGGCAACGTCCCAGCAGGCACTACGGTGGACAGCACCATCACACACCCCTCAGAGTTTGACTTCTACCTGTGCAGCCATGCTGGCATCCAGGGCACCAGCCGTCCCTCTCACTATCACGTGTTGTGGGACGACAACTGTTTCACCGCTGACGAGCTCCAGCTTTTGACCTATCAGCTCTGCCACACTTATGTGCGCTGCACCCGCTCCGTCTCCATCCCCGCGCCAGCTTACTATGCCCGGCTAGTGGCCTTCCGTGCACGCTATCATTTAGTGGACAAAGACCATGACAGTGCTGAAGGCAGTCACGTATCAGGACAGAGCAACGGTCGAGACCCGCAGGCGCTGGCGAAAGCTGTGCAGATTCACTACGACACACAGCACACCATGTACTTCGCCTGACCACAGCCAGCAGGAGGCGCACTTCTACACTCCTTCCATCTATATctattatctctctctctctctctctctctctctctctctctctctctctctattatctcactctctctctctcatgctgTATTTCTCTCTGTTATCTCTCTCTCTTGAAGCGGGGGC

Function

symbol description
ago4 Predicted to enable miRNA binding activity. Predicted to be involved in miRNA mediated inhibition of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in P-body. Predicted to be part of RISC complex. Is expressed in several structures, including eye; fin; integument; pleuroperitoneal region; and somite. Orthologous to human AGO4 (argonaute RISC component 4).

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5357 Predicted to enable miRNA binding activity. Predicted to be involved in miRNA mediated inhibition of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in P-body. Predicted to be part of RISC complex. Is expressed in several structures, including eye; fin; integument; pleuroperitoneal region; and somite. Orthologous to human AGO4 (argonaute RISC component 4).

Ensembl:

ensembl_id ENSDARG00000100854

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029664 True 2877 mRNA 0.56 18 47800550 47832853

Neighbor

gene id symbol gene type direction distance location
XLOC_015064 cdca8 coding downstream 17634 47771659 ~ 47782916 (-)
XLOC_015063 NA coding downstream 39059 47760897 ~ 47761491 (-)
XLOC_015062 CABZ01071972.1 coding downstream 212831 47578811 ~ 47587719 (-)
XLOC_015060 rrm2 coding downstream 228742 47564890 ~ 47571808 (-)
XLOC_015061 CU695215.1 coding downstream 232702 47567713 ~ 47567848 (-)
XLOC_015066 NA coding upstream 99045 47931898 ~ 47932934 (-)
XLOC_015067 ctnnb2 coding upstream 143063 47975916 ~ 47997424 (-)
XLOC_015068 zgc:158376 coding upstream 170838 48003691 ~ 48015928 (-)
XLOC_015069 NA coding upstream 184853 48017706 ~ 48024071 (-)
XLOC_015070 csf3b coding upstream 204945 48037798 ~ 48039506 (-)
XLOC_014711 CR382300.3 misc downstream 28071795 19728690 ~ 19728755 (-)
XLOC_015055 CU929178.1 non-coding downstream 384145 47415590 ~ 47416405 (-)
XLOC_015054 CU929178.2 non-coding downstream 400243 47400189 ~ 47400307 (-)
XLOC_015051 NA non-coding downstream 627142 46999261 ~ 47173408 (-)
XLOC_015071 NA non-coding upstream 352445 48185298 ~ 48186157 (-)
XLOC_015072 NA non-coding upstream 404797 48237650 ~ 48241837 (-)
XLOC_015075 NA non-coding upstream 495695 48328548 ~ 48330301 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000223_00357780_00374635 AGO4 coding CI01000223 null 357559 ~ 375552 (-)