XLOC_015068 (zgc:158376)


Basic Information

Item Value
gene id XLOC_015068
gene name zgc:158376
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48003691 ~ 48015928 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029666
CCGGTGCTGCCACACACAGCCGTGTGTTTTGCATGTGGTGAAGCAGGAAAGGAGGATACGGTGGAGTCTGAGGAGGAGAAGTTCAGCCTGTCCCTGATGGAGTGCACCATCTGCAATGAGATCATCCACCCCAGCTGCCTGAAGATGGGAAAGTCTGAAGGCATCATCAACGACGAGATCCCGAACTGCTGGGAGTGCCCGAAGTGCCACAAGGAAGGAAAGACCAGTAAGGATCAGACAGACGGGCTGGGAAAGCGGCGCATGGATAATGGAGAAGTGAGCCGCTGGAAGCTGACGGATGAGCCTCCGGCCAGTAAGAAGAAGAGTCTCTCTGTGGAGGACGCGCCGCGCTCAGATGGACCCAAACGCAAGAAGGAGAAGGAGCTTCCGCAGGACAGTGGCTCCAAGAAGAAGATTAAAGGTGCCCGTGAGAAACACCTGAAGAAGaaAGTGAAACCCAACTCCTCAGACTCCTCTGAGGCAAATGGGCCCAACTCCTCATCGGGCGGCGGGCATGGTTCGGGCACTGCAGCGGCATCGGCCTTGCTATCCGCCAGCCAGGACCAGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCAGCTCAGAGTCGGACTCGGAGTCAGACTCGGACTCTCCGTCGCCCATCGCTGCCTCTGAGCCCTCCTCTCCGGCCTACGGGGGCAGCGCCCGCGAGCGGAACCGGCGACTGGCAGAGCTGGGCTTCAGTGCCAGTGAGGAGTCTGAGGGTGAGAGCGTGGCAGAGGTGGAGGTGGAGGGCGTGGAGGAGCCGCAGCGCCGCAGGGGAGATGGTGCCCGGGTGCGCAGGGCAGCGCTGGAGCCTGAGccagaggaggaggaagagggcgTGGGGGACCATAGAGCTGCACCCGCGGCCCCCGCCTCACCGCAGCCAAACACACAGACTCcacccttcacacacacacactccacggGCACCGACGGCCTGCCCTCCTCCAAGCGCACTAATGGGCAGGATGCCCGCAACGGCCGCACGCGGGTGGGCAGAGAGCAGCAGGAGAAGGAGAATGCCCACAGCAGTGCTGCGCCCAACCACCGCCACGTGAAGCCTGCCCGCGGCAGCAAGATGCGTGGTGGAGGCCGGCAGGGGCAGAGCGCGGCGTCCGGGAAGAGCAGCAGCGCAGCGGTGAGTTCGGGCACCGCCAATGGTAGCACCGGCTTCACCAACCCGGCACCCCTGGCGGGAGCGTCTCTGGCCTCGCACCGCTCGCAGCAGCCGCGGGTGGTGCCGCCGCGCTCGCAGCTGGTAAAGCGCAGCTCTGTACCTGTGCCCTCGCCCCCACGCCCGCTGCAGATGGAGCGGCATCTGGTGCGCCCACCGCCCGCCTGCCCTGAGCCACACTGCCTCCCGCTGGACAGTGGCGCCACACACGTGCTGCCCAGAGACGTCTGGCTCCGAGTCTTCCAGCACCTCAACCAGCGGCAGCTCTGCGTCTGCATGCGCGTGTGTCGCACCTGGAGCCGATGgtGCTGTGATAAGCGATTATGGACTCGGATCGATCTGAGCCGGCAGCGCTCCATCACTCCTCCAATGCTCAGCAGCATCATCCGCCGGCAGCCTGTCGCCCTCAACCTGGGCTTCACCAACATCTCCAAGAAGCAGCTGATGTGGCTGATCAACCGCCtgcaaggtctgCTGGAGCTGAATCTGTCGGGCTGCTCCTGGTCTTCAGTGTCTGCTCTCTGTCAGTCTGTGTGTCCGTGTCTGCGGCTCCTGGACCTCAGCCGCGTCGAGGACCTCAAAGACTCCCACCTGAAGGAGCTGCTGGCCCCGCCCTCCAATGACACGCGCTCAGAGGCTGTGATTGGCCGAGGCCAGCGAATGGTGTCGCAGCAGGAGTCCAAGCTGGCGCAGCTGCAGGAGCACAGGGCTCGACTGGAGGCTCAGGCCATCTCAGACGACCACATCGGCTTCCTTCAGGTGACACGCCGCCCCATTCACCACTAGCTCCATCCGGCTCACCTGTCACAGCTACCCGTGCTCAGAGCCTGCGCTACGCGTCGTGACGTGTTgctgtGCGAAGGTGACGGATCAGTGTGTGCCGCTGCTGCGCCGCTGTGCCTCTCTGCAGACGCTGGACCTGCGCTCCTGCCTCCTCCTCGCACCGGACGCCAGCCAGCTGCACAGCTTCCCTGCGGCTCCAGAACAGCTGAACACACTACAGACTCACACCCCCCTGtaa
>TCONS_00029667
ATGGACGCGGAGCTGTTCTCGGAGCAGGAGCTGACCTGCTCCATCTGTCTGGACCTGTTCAGCGAGCCCGTCTCCACGGCCTGCGGACACAACTTCTGCCAGGGCTGCATCGGGGGCTACTGGGCCTCCAGCGCCGTCTGCTCCTGCCCGCTGTGCAAGCGGGAGTTCGAGGAGCGGCCGGAGCTCAGCATCAACCGAGTGTTTGCCCAGATCGCACTCAAATACCAGCAGATGCGCTACGGGGAGGCTGCGCAGGCCCGGCAGGAGAACCCGAGCGCAGAAGCGGAACCAAAGCTGGAGCCGGTGTTCTGTGACGTCTGCAGCGGCGTGAAGAAGCCTGCGCTGCGCTCCTGCCTCACCTGCACCGCCTCCTACTGCGACACACACCTGCAGCCGCACCTGCACACCCCCTTCTACAGCACACACCGCCTGCTGCCGCCGCACGACGCCCTGCGGGGACGCACCTGCCGCGAGCACGGCCGCCTGCTGGAGGTGTTCTGCCGGACCGACCAGCGCTGCATCTGCGCCATCTGTGTTCTGGAGGAGCACCGCACACACACCACTGTCTCTGTGCAGACCGAGCGCGCTCTCAAACAgAGGCTGCTGGGTAAGATGGAGTTggagctgcaggtgtgtgtggacAGGAGATCTGCTCAGCTGGCGGAACTGAAGACTAAACTCCTCACTGTACAGagataCAGCCAGGCGGAGCAGGCCGAGGTGGAGCAGCTGCTGTCAGACATGAGCTCCTCCATCCAGCGAATCCGCTCCGAGCTGGTGGGCGGCATCCAGGACAAGAGAGAGGCTGTGATTGGCCGAGGCCAGCGAATGGTGTCGCAGCAGGAGTCCAAGCTGGCGCAGCTGCAGGAGCACAGGGCTCGACTGGAGGCTCAGGCCATCTCAGACGACCACATCGGCTTCCTTCAGAGCTTCCAGGCAGCCAGCGGCCCCATGCAGGATGAGGCGGGGCAGGAGGCGGAGCAGGAGGCGGAGCTCACACTGCGCTTCTCTCTGGGGGACGTGAAGGCGGCGCTGGGGGAGATCCGGGACCGGCTGGAGGACATCCGCAGTGgagaagtgcagtacagacactCCGTGTCGACATTAGCAGAGAGTGAGAGCATGATGAGTGTAAGATCCATGAGGAGGAAGGACTGGTCACttaaagATCTGCGCAGGATAAAgacagGACACAAGAAGGTCAAAGGTTATCTGGaggacGTGAGCCTGAACCCGGTCACTGCGTACCCGTTCCTCATCCTGTCAGAGGACCGGAAGCAGCTGAAGCGTGGAGAGAAGCTGCAGTTCTACAGGAACAACACACAGCGCTACGACGTCTGGTCCTGCGTCCTGGCCAAGGAGAGCTTCCAGACCGGCCGACACTACTGGGAGGTCAGTGTCGGGGAGAATCGGGACTGGAAGCTGGGCGTGGTCTGCGAGTCGGCGCAGAGGAAGGGTCTGTTTGACATGACGCCGGCTGCTGGCTACTATGCCCTCTGGTGGAGCGGGAACCACCTGCGCGCGCTCACCGCCCCATCTCTGTCCAAGGTGAAGGTGGCAGGTCACCTGCGGCGGGTCGGGGTGTACCTGGACTGTGAGGAGGGCCAGGTGATCTTCTACAATGCCAAGAGCGGCGCAGAGCTGTACTGCTTCAGCGGGCCGCTGTCCGAGAAGATGCTGCCGCTGTTCGGCACCGCGGATAAAGAGGTGCCAATGGTGCTGTGCAGCGCTGCGGACTGA

Function

symbol description
zgc:158376 Predicted to enable histone demethylase activity and transcription coregulator activity. Predicted to be involved in protein demethylation and regulation of transcription by RNA polymerase II. Orthologous to human FBXL19 (F-box and leucine rich repeat protein 19).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070720-8 Predicted to enable histone demethylase activity and transcription coregulator activity. Predicted to be involved in protein demethylation and regulation of transcription by RNA polymerase II. Orthologous to human FBXL19 (F-box and leucine rich repeat protein 19).

Ensembl:

ensembl_id ENSDARG00000103362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029666 False 2299 mRNA 0.61 9 48003691 48015928
TCONS_00029667 True 1740 mRNA 0.63 9 48004954 48010490

Neighbor

gene id symbol gene type direction distance location
XLOC_015067 ctnnb2 coding downstream 6267 47975916 ~ 47997424 (-)
XLOC_015066 NA coding downstream 70757 47931898 ~ 47932934 (-)
XLOC_015065 ago4 coding downstream 170838 47800550 ~ 47832853 (-)
XLOC_015064 cdca8 coding downstream 220775 47771659 ~ 47782916 (-)
XLOC_015063 NA coding downstream 242200 47760897 ~ 47761491 (-)
XLOC_015069 NA coding upstream 1778 48017706 ~ 48024071 (-)
XLOC_015070 csf3b coding upstream 21870 48037798 ~ 48039506 (-)
XLOC_015071 NA coding upstream 169370 48185298 ~ 48186157 (-)
XLOC_015072 NA coding upstream 221722 48237650 ~ 48241837 (-)
XLOC_015073 si:ch73-359m17.11 coding upstream 284365 48300293 ~ 48306765 (-)
XLOC_014711 CR382300.3 misc downstream 28274936 19728690 ~ 19728755 (-)
XLOC_015061 CU695215.1 non-coding downstream 435843 47567713 ~ 47567848 (-)
XLOC_015055 CU929178.1 non-coding downstream 587286 47415590 ~ 47416405 (-)
XLOC_015054 CU929178.2 non-coding downstream 603384 47400189 ~ 47400307 (-)
XLOC_015075 NA non-coding upstream 312620 48328548 ~ 48330301 (-)
XLOC_015076 NA non-coding upstream 318160 48334088 ~ 48336535 (-)

Expression


Co-expression Network