XLOC_015075


Basic Information

Item Value
gene id XLOC_015075
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48328548 ~ 48330301 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030364
TGATGAATGTGTTTCTGCCAGAGTCTGaacacagatctcagatcagcacAAACAGcagctcatcatcatcatcatcatcatgatgaAGATTCTGGCTCTCGCTCTGCTGGTGTTGGCTCTGCAGACTCTATCATATGCACAGGTAATTCACTTATATTTTCATCCTAGCTTTAATATtgattaaaatgataaattactTAAATGATAGTTTAAATGTATGAAACTGTACATAACTATTGAAGTATAACTGTTTTTTATTGATTCGCTATGTGAACTGAAACATTATTATGGCTATTTATTATCATTTCTTCGTCTGTGTCTGTTGTGTTAATCTGCTTTTCACAATCTACATCATAAAAGCCCCATAGAAATGAAGATCTGTTGATCTGATAAAATCTGAGGAATTGTCACATATTTTCCctattaaacatataaaacacTTGAAATAAAGTTTACAGcactgtacactcaaaaaaataaataaaataaaatcaatgctgGGTTACAGTAACAGAACTGTAACAAAGGATGTTATGCATATGCGGAACTAAAACAACATTATTGCAGAAGCTGATTTGATATTTAAACGATGATTTGAATATTCATCAGATCAGACAAACAGGAAGTAGAAAAGATGTCACCAGTGGTTTAACATACTGTCCATACTGTCTTCTTGTTTCATAACTAAAGCAAACCACAGTGTCTACAACTACTAGAGTCACAACAGTTCCTACAACTACTACTATATCAACCAGCAAACCCTCATACAACTCCACTAATGGCCCGCCGGTCCTGGAGGCTCTGATCCACCTGCTGGTTCTTCCGGTCTTTGTGTTTCTTTGGTGGCCCTGAGAAAACCTGCAGATTCTGCTCCTCTTCTCTTTCTAAAGCTGATTTTACATGAAGGGTTAACTGCTGGAATTAATATTAGACATGAATACTGTAAACTATaagaaataaaagccattttCATACAAATCTGGACTGTGTCTGATGCCGATTCTGAAATGTTAATCTGAAAACATTGATTATTTACTTCCCTTTGCTTAACTTTGTAACTACTGTATATGCATGAATACAAGAACTATAATGATAATTAATGAGATTAACTGCTGAAGATaatattaggcaaggcaaggcaagtttatttatatagcacatttcatacacaatggcaattcaaagtgctttacataaacaagaataaaagaaacaagtaaaataaaaataaaaacaaataataaaaatgcataaaaacaaaacaaaacataaaaacaggtaaaatgtgatataaaagaatgaagaagaagagaaaaacatgatagtgcaatctgttggacgcagcacagtgctcatacagtaaaggcacagctaaacagatgtgttttcagtcttgatttgaatgtgcctaatgttttAGACATTATTACTActgtaaatgattaaataaaagccATTTTCATACAAATCTGGACTGTGCCTGACGCCAATTGTCAAATGTTAATCTGAAAAACaagatttatttacttttgtgtgTTTACAAGCTGATCATATGGGTTTGTTGACTATAATTACtgtatttaactaaataaaacaccACAAGTAGGATTTATAAGGGAACTCTCTGTACTTGTACTGGTGTTAGAGTAAATGAGCTTTGCTTAGTGACTGATACAGCTGAGAATATATCAGTTCCCCATTAAAGATGGATTGAAATCTGTTAATGTTTCAATAAAGCACAATATTTCTCTGTT
>TCONS_00029674
CTGCCAGAGTCTGaacacagatctcagatcagcacAAACAGcagctcatcatcatcatcatcatcatgatgaAGATTCTGGCTCTCGCTCTGCTGGTGTTGGCTCTGCAGACTCTATCATATGCACAGCAAACCACAGTGTCTACAACTACTAGAGTCACAACAGTTCCTACAACTACTACTATATCAACCAGCAAACCCTCATACAACTCCACTAATGGCCCGCCGGTCCTGGAGGCTCTGATCCACCTGCTGGTTCTTCCGGTCTTTGTGTTTCTTTGGTGGCCCTGAGAAAACCTGCAGATTCTGCTCCTCTTCTCTTTCTAAAGCTGATTTTACATGAAGGGTTAACTGCTGGAATTAATATTAGACATGAATACTGTAAACTATaagaaataaaagccattttCATACAAATCTGGACTGTGTCTGATGCCGATTCTGAAATGTTAATCTGAAAACATTGATTATTTACTTCCCTTTGCTTAACTTTGTAACTACTGTATATGCATGAATACAAGAACTATAATGATAATTAATGAGATTAACTGCTGAAGATaatattaggcaaggcaaggcaagtttatttatatagcacatttcatacacaatggcaattcaaagtgctttacataaacaagaataaaagaaacaagtaaaataaaaataaaaacaaataataaaaatgcataaaaacaaaacaaaacataaaaacaggtaaaatgtgatataaaagaatgaagaagaagagaaaaacatgatagtgcaatctgttggacgcagcacagtgctcatacagtaaaggcacagctaaacagatgtgttttcagtcttgatttgaat

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0008380 RNA splicing biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000103319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030364 False 1754 lncRNA 0.33 1 48328548 48330301
TCONS_00029674 True 842 mRNA 0.36 2 48328898 48330287

Neighbor

gene id symbol gene type direction distance location
XLOC_015074 si:ch73-359m17.9 coding downstream 16439 48308750 ~ 48312109 (-)
XLOC_015073 si:ch73-359m17.11 coding downstream 21783 48300293 ~ 48306765 (-)
XLOC_015072 NA coding downstream 86711 48237650 ~ 48241837 (-)
XLOC_015071 NA coding downstream 142391 48185298 ~ 48186157 (-)
XLOC_015070 csf3b coding downstream 289042 48037798 ~ 48039506 (-)
XLOC_015076 NA coding upstream 3787 48334088 ~ 48336535 (-)
XLOC_015077 NA coding upstream 9045 48339346 ~ 48349001 (-)
XLOC_015078 rpl14 coding upstream 34011 48364312 ~ 48371092 (-)
XLOC_015079 si:ch73-359m17.2 coding upstream 52662 48382963 ~ 48391434 (-)
XLOC_014711 CR382300.3 misc downstream 28599793 19728690 ~ 19728755 (-)
XLOC_015069 NA non-coding downstream 304477 48017706 ~ 48024071 (-)
XLOC_015066 NA non-coding downstream 395614 47931898 ~ 47932934 (-)
XLOC_015063 NA non-coding downstream 567057 47760897 ~ 47761491 (-)

Expression


Co-expression Network