XLOC_015141 (ipp)


Basic Information

Item Value
gene id XLOC_015141
gene name ipp
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 2994052 ~ 3022655 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030431
CTGACAGACTGAGACGCCGATGCAGGAAAGCTCGATGCTCGTGCGGAAGTGGCTCTGCCCAAAATATGGATAAATGAAGTCAAGaaaaaagacaaattaaaatGTAA
>TCONS_00033227
CTGACAGACTGAGACGCCGATGCAGGAAAGCTCGATGCTCGTGCGGAAGTGGCTCTGCCCAAAATATGGATAAATGAAGTCAAGaaaaaagacaaattaaaatGTAAAAGCTCAGTGACTGTGGCGTCCGGCTGGAATCCTCCTCATCATGTGCTCTGCCGGTCCCTCTCTGGCGCACACGCGCTGCGATGAAGCGGTTGCAGTGAAGGATCATGGGAGTTTCTCCTCTGACAGACACGCCAGGCTCCTGCTGGCTCAGATGAATAAGATGCGTCTGCAGGCCGACTTCTGCGATGTGCGGCTGCTGGTGGGCGGACGACGGTTTGGGGTCCATAAGCTGGTGCTGGCTGCCAGCGGGCCGTATTTCGCCGCTCTGTTCTCCGGAGCCATGAGCGAAGCCCACGAGGAGGAGGTGCGCATCGCTGGAGTGGAGCCACACGTCTTTGAGATCCTCCTGGAGTTTATCTACACCGTACAGCTTATTGATGTGACGGTGGACACGGTGCAGGAGCTGATGGTGGCCGCAGATATGCTACAGCTGACGGAGGTGGTTGAGATCTGTGGTCAGTTCCTGCGCGCTCATATGGACCCGTCTAACTGTGTGGGAATCTATCGCTTTCTGGAGCAGATCGCCTGTGTGGAGCTGCTGCAGTTCACTGAGGACTACATACACGTCCACTTTCTGGAGGTTTGCTCTTCAGAGGAGTTCTCCAGCATGTCTTCAGATCAGCTGGTGAAGCTGCTGCGCAGTGAGGAGCTGCGGATCGAGGACGAGTATCAGGTGTTCACGGCAGCCATGGATTGGCTGCATCACGAcgtgcctcacaggaagaagcaTGTGGTGGAGGTGCTGGAGCCGGTGCGCTTCCCTCTGCTCTCTCCACAGAGACTCTACAAGTACATCGAGGGCATATCCGACTTCAGTTTGCGAGTTGCGCTGCAAACCCTTCTGAGGGAGTACACTGAAGTCAGCAAGTCCCCTAAAGAGAGCAAACCTTTCAGCCTTCTGCAGACAGCCAAGACCCGGCCCAGGAGAAAAGCCCGCAAGTACCTCTATGCCATCGGTGGCTACACTCGTCTGCAGGGCGGCCGCTGGAGTGACAGTCGGGCTCTGAGTTGTGTGGAACgctttgattcattcagtcagtatTGGACCACAGTGTCCTCCCTGCACCAGGCCCGCAGTGGACTCGGGGTGGCAGTACTGGAGGGCATGATATATGTCATCGGGGGAGAAAAAGACTCCATGATCTTCGACTGCACGGAGCGCTATGATCCAGTGACCAAGCAGTGGGCCGCAGTGGCGTCTCTGAACTTTCCCCGCTGTGGAGTTGGAGTTTGTTCCTGTCATGGAGCTCTTTATGCACTTGGTGGCTGGATTGGTTCAGAAATTGGGAAGACCATGGAACGATACGACCCAGAAGAGAATAAATGGGAGGTGATAGGGAGCATGGCTGTTCCTCGATACTATTTTGGCTGCTGCGAGCTGCAAGGCTTCATCTATGTGATTGGTGGCATCAGTGATGAGGGAACGGAGCTGCGCTCGGCTGAAGTTTACGACCCAATCTCTCGGCGGTGGAGCGCGCTGCCTGTCATGGTGACCCGGCGGGCGTATGTGGGCGTGGCCAGTCTCAATAACTGCATCTACGCTGTCGGAGGCTGGAACGAGGCTCTGGGGTCACTGGACACCGTGGAGAAATACTGCCTTGAGGAGGAGAAGTGGGTGGAGGTGGCGTCGATGTCGGTCCCTCGCGCTGGAGTAACGGTAGCGGCTGTCAACGGTTTGTTATATGCAGTTGGCGGTCGAACTACAAGCCGTGACTTTTCGGCACCCGTCACCGTAGACTCTGTGGAAATTTACGACCCCCATCTGGACACGTGGACGGAGATCGGTAACATGATCACCAGCCGATGTGATGGAGGCGTAGCTGTGCTCTAATTTACTCAACACCACCCTAGGAAATGTGTCTTAATTTATTatggtttttaaaaagtgtgaggAATTAGTTGAGTTGAAGAGGCCTTGTTTGAGGATTGACTACCAgtgtgtatttttctttaaaccaCTTGTGTGTTGTTTAAGATCACATGTTGTTAAAgcggcagttcacccaaaaatgaacatttcctcattGTT
>TCONS_00030432
CTGACAGACTGAGACGCCGATGCAGGAAAGCTCGATGCTCGTGCGGAAGTGGCTCTGCCCAAAATATGGATAAATGAAGTCAAGaaaaaagacaaattaaaatGTAAAAGCTCAGTGACTGTGGCGTCCGGCTGGAATCCTCCTCATCATGTGCTCTGCCGGTCCCTCTCTGGCGCACACGCGCTGCGATGAAGCGGTTGCAGTGAAGGATCATGGGAGTTTCTCCTCTGACAGACACGCCAGGCTCCTGCTGGCTCAGATGAATAAGATGCGTCTGCAGGCCGACTTCTGCGATGTGCGGCTGCTGGTGGGCGGACGACGGTTTGGGGTCCATAAGCTGGTGCTGGCTGCCAGCGGGCCGTATTTCGCCGCTCTGTTCTCCGGAGCCATGAGCGAAGCCCACGAGGAGGAGGTGCGCATCGCTGGAGTGGAGCCACACGTCTTTGAGATCCTCCTGGAGTTTATCTACACCGGGCTTATTGATGTGACGGTGGACACGGTGCAGGAGCTGATGGTGGCCGCAGATATGCTACAGCTGACGGAGGTGGTTGAGATCTGTGGTCAGTTCCTGCGCGCTCATATGGACCCGTCTAACTGTGTGGGAATCTATCGCTTTCTGGAGCAGATCGCCTGTGTGGAGCTGCTGCAGTTCACTGAGGACTACATACACGTCCACTTTCTGGAGGTTTGCTCTTCAGAGGAGTTCTCCAGCATGTCTTCAGATCAGCTGGTGAAGCTGCTGCGCAGTGAGGAGCTGCGGATCGAGGACGAGTATCAGGTGTTCACGGCAGCCATGGATTGGCTGCATCACGAcgtgcctcacaggaagaagcaTGTGGTGGAGGTGCTGGAGCCGGTGCGCTTCCCTCTGCTCTCTCCACAGAGACTCTACAAGTACATCGAGGGCATATCCGACTTCAGTTTGCGAGTTGCGCTGCAAACCCTTCTGAGGGAGTACACTGAAGTCAGCAAGTCCCCTAAAGAGAGCAAACCTTTCAGCCTTCTGCAGACAGCCAAGACCCGGCCCAGGAGAAAAGCCCGCAAGTACCTCTATGCCATCGGTGGCTACACTCGTCTGCAGGGCGGCCGCTGGAGTGACAGTCGGGCTCTGAGTTGTGTGGAACgctttgattcattcagtcagtatTGGACCACAGTGTCCTCCCTGCACCAGGCCCGCAGTGGACTCGGGGTGGCAGTACTGGAGGGCATGATATATGTCATCGGGGGAGAAAAAGACTCCATGATCTTCGACTGCACGGAGCGCTATGATCCAGTGACCAAGCAGTGGGCCGCAGTGGCGTCTCTGAACTTTCCCCGCTGTGGAGTTGGAGTTTGTTCCTGTCATGGAGCTCTTTATGCACTTGGTGGCTGGATTGGTTCAGAAATTGGGAAGACCATGGAACGATACGACCCAGAAGAGAATAAATGGGAGGTGATAGGGAGCATGGCTGTTCCTCGATACTATTTTGGCTGCTGCGAGCTGCAAGGCTTCATCTATGTGATTGGTGGCATCAGTGATGAGGGAACGGAGCTGCGCTCGGCTGAAGTTTACGACCCAATCTCTCGGCGGTGGAGCGCGCTGCCTGTCATGGTGACCCGGCGGGCGTATGTGGGCGTGGCCAGTCTCAATAACTGCATCTACGCTGTCGGAGGCTGGAACGAGGCTCTGGGGTCACTGGACACCGTGGAGAAATACTGCCTTGAGGAGGAGAAGTGGGTGGAGGTGGCGTCGATGTCGGTCCCTCGCGCTGGAGTAACGGTAGCGGCTGTCAACGGTTTGTTATATGCAGTTGGCGGTCGAACTACAAGCCGTGACTTTTCGGCACCCGTCACCGTAGACTCTGTGGAAATTTACGACCCCCATCTGGACACGTGGACGGAGATCGGTAACATGATCACCAGCCGATGTGATGGAGGCGTAGCTGTGCTCTAATTTACTCAACACCACCCTAGGAAATGTGTCTTAATTTATTatggtttttaaaaagtgtgaggAATTAGTTGAGTTGAAGAGGCCTTGTTTGAGGATTGACTACCAgtgtgtatttttctttaaaccaCTTGTGTGTTGTTTAAGATCACATGTTGTTAAAgcggcagttcacccaaaaatgaacatttcctcattGTT

Function

symbol description
ipp Predicted to enable actin binding activity. Orthologous to human IPP (intracisternal A particle-promoted polypeptide).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-080204-28 Predicted to enable actin binding activity. Orthologous to human IPP (intracisternal A particle-promoted polypeptide).

Ensembl:

ensembl_id ENSDARG00000075339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030431 False 107 processed_transcript 0.43 1 2994052 2994158
TCONS_00033227 False 2137 lncRNA 0.54 11 2994052 3022655
TCONS_00030432 True 2134 processed_transcript 0.54 10 2994052 3022655
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Neighbor

gene id symbol gene type direction distance location
XLOC_015140 pik3r3a coding upstream 5339 2957515 ~ 2988713 (+)
XLOC_015139 CABZ01112864.1 coding upstream 66788 2918759 ~ 2927264 (+)
XLOC_015138 eif2b5 coding upstream 76904 2904080 ~ 2917148 (+)
XLOC_015137 rock1 coding upstream 93227 2818645 ~ 2900825 (+)
XLOC_015136 thoc1 coding upstream 203559 2772447 ~ 2790493 (+)
XLOC_015142 C2H1orf35 coding downstream 22337 3044992 ~ 3062793 (+)
XLOC_015143 NA coding downstream 77943 3100598 ~ 3104729 (+)
XLOC_015144 FP102843.1 coding downstream 152215 3174870 ~ 3174995 (+)
XLOC_015145 wnt9a coding downstream 178690 3201345 ~ 3271007 (+)
XLOC_015146 jmjd4 coding downstream 380609 3403264 ~ 3414068 (+)
XLOC_015126 NA non-coding upstream 969379 2021153 ~ 2024673 (+)
XLOC_015120 NA non-coding upstream 1323032 1666551 ~ 1671020 (+)
XLOC_015119 NA non-coding upstream 1369430 1622864 ~ 1624622 (+)
XLOC_015118 CR848026.1 non-coding upstream 1418762 1575184 ~ 1575290 (+)
XLOC_015117 NA non-coding upstream 1466034 1523173 ~ 1528018 (+)
XLOC_015155 NA non-coding downstream 583375 3606030 ~ 3607401 (+)
XLOC_015162 BX842700.1 non-coding downstream 1259027 4281682 ~ 4288546 (+)
XLOC_015166 NA non-coding downstream 1872201 4894856 ~ 4898290 (+)

Expression

Expression of XLOC_015141(ipp) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Expression of XLOC_015141(ipp) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000098_00100321_00118261 IPP coding CI01000098 null 99785 ~ 118261 (-)