XLOC_015169 (si:ch1073-184j22.1)


Basic Information

Item Value
gene id XLOC_015169
gene name si:ch1073-184j22.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5371492 ~ 5389696 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030476
CATGGTCTTCCCGGTCCACCAGGCCCTCCGGGTCCTCAGGGGCCTCCAGGTCCACCGGGCCCCTTACTGCCTTATCATGCAGAGTTTATAAAGGACTTCCAGTTCAAATTAAAAGAGATGGTCGGAACTTACTGTGTGTATTGTGATCAACCTCCTCGTGTGGCCACGGCTTTCCGCTGCCGAATTCAACACAACCAGCTGGTCCACCGCCGCAGCCTGCAGGAGCTCCAGCCCTTCAACACTCCTTCGAACACAGAGCAGTTCCATCAGAGAGGACAGGGCTTTAACATCAGCAGCGGCCGCTATACGGCTCCAGTGTCTGGCTTCTATCAGCTCTCAGCTAATCTGCTGCTAGAATCCAACTCAGAGTCTCAGAAAAAGGCCCACGGCAGGCAGAGGGACAGTGTCAGAGCCTCCATATGCATAGAGTCTCTGTGTCAGAGCAATGTGTCTCTGGAGACGGTGACTGGGGTTAGCGCTACAGGAGGAGTATTCAGTATTCTCCTGTCCGGGACGCTTTACTTGCAGGCTGGAGAGTATGTGTCTATTCTCATTGACAACGGCACAGGTTCAGCCCTCACAGTTCTCCAAGACAGTCTGTTTTCTGGCATCCTTATTGGAGTATGAAGACAGTAACAAAGCAGAAACCAATCAAAACTGACGAAATACTCATCTGTATTACGAGATTGAGTTCAGGACTTATTACAATAGTAATGACGTGACGTTTCACAAAGAGCAGCAGGATTGCACTgcgattgtttttatttttattattccaaAAATAATGCAGATAACATCTAAACTGTTCATAAAGATGTATGTACTTTTTCATGTGGTATGTTAATGTATCCTTTCATAACAGGgttgaagttttatttatttgcatttgctttatgaaaaaaaaaatattgatgtgtgtgtgtgtgtatatatatatatatatgcaataaaatGCTTCCAAAA
>TCONS_00030477
CACGGCTTTCCGCTGCCGAATTCAACACAACCAGCTGGTCCACCGCCGCAGCCTGCAGGAGCTCCAGCCCTTCAACACTCCTTCGAACACAGAGCAGTTCCATCAGAGAGGACAGGGCTTTAACATCAGCAGCGGCCGCTATACGGCTCCAGTGTCTGGCTTCTATCAGCTCTCAGCTAATCTGCTGCTAGAATCCAACTCAGAGTCTCAGAAAAAGGCCCACGGCAGGCAGAGGGACAGTGTCAGAGCCTCCATATGCATAGAGTCTCTGTGTCAGAGCAATGTCTCTGGAGACGGTGACTGGGGTTAGCGCTACAGGAGGAGTATTCAGTATTCTCCTGTCCGGGACGCTTTACTTGCAGGCTGGAGAGTATGTGTCTATTCTCATTGACAACGGCACAGGTTCAGCCCTCACAGTTCTCCAAGACAGTCTGTTTTCTGGCATCCTTATTGGAGTATGAAGACAGTAACAAAGCAGAAACCAATCAAAACTGACGAAATACTCATCTGTATTACGAGATTGAGTTCAGGACTTATTACAATAGTAATGACGTGACGTTTCACAAAGAGCAGCAGGATTGCACTgcgattgtttttatttttattattccaaAAATAATGCAGATAACATCTAAACTGTTCATAAAGATGTATGTACTTTTTCATGTGGTATGTTAATGTATCCTTTCATAACAGGgttgaagttttatttatttgcatttgctttatgaaaaaaaaaatattgatgtgtgtgtgtgtgtatatatatatatatatgcaataaaatGCTTCCAAAACTGCTGAG

Function

symbol description
si:ch1073-184j22.1 Predicted to enable hormone activity. Predicted to be active in extracellular space. Orthologous to human ERFE (erythroferrone).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-74 Predicted to enable hormone activity. Predicted to be active in extracellular space. Orthologous to human ERFE (erythroferrone).

Ensembl:

ensembl_id ENSDARG00000055498

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030476 False 963 mRNA 0.45 6 5371492 5389688
TCONS_00030477 True 805 nonsense_mediated_decay 0.43 5 5380858 5389696
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015168 GNB4 coding upstream 60239 5300405 ~ 5311253 (+)
XLOC_015167 pex5lb coding upstream 90774 5245692 ~ 5280718 (+)
XLOC_015166 NA coding upstream 473202 4894856 ~ 4898290 (+)
XLOC_015165 bambib coding upstream 962674 4402765 ~ 4408818 (+)
XLOC_015164 wacb coding upstream 983489 4383061 ~ 4388003 (+)
XLOC_015170 sft2d3 coding downstream 16540 5406236 ~ 5407872 (+)
XLOC_015171 dusp28 coding downstream 56391 5446087 ~ 5450198 (+)
XLOC_015172 crfb16 coding downstream 131975 5521671 ~ 5536927 (+)
XLOC_015173 mb21d2 coding downstream 173381 5563077 ~ 5581772 (+)
XLOC_015174 fgf12a coding downstream 197799 5587495 ~ 5681658 (+)
XLOC_015162 BX842700.1 non-coding upstream 1082946 4281682 ~ 4288546 (+)
XLOC_015155 NA non-coding upstream 1764091 3606030 ~ 3607401 (+)
XLOC_015144 FP102843.1 non-coding upstream 2196497 3174870 ~ 3174995 (+)
XLOC_015143 NA non-coding upstream 2266763 3100598 ~ 3104729 (+)
XLOC_015175 NA non-coding downstream 336768 5726464 ~ 5729675 (+)
XLOC_015176 NA non-coding downstream 341431 5731127 ~ 5736505 (+)
XLOC_015178 NA non-coding downstream 451412 5841108 ~ 5884404 (+)
XLOC_015185 NA non-coding downstream 848085 6237781 ~ 6239318 (+)
XLOC_015189 BX927289.1 non-coding downstream 978006 6367702 ~ 6367816 (+)

Expression

Expression of XLOC_015169(si:ch1073-184j22.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_015169(si:ch1073-184j22.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network