Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_015187 |
| gene name | zp3b |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 6253246 ~ 6258796 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| zp3b | Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be located in extracellular space and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix. |
| id | name | namespace |
|---|---|---|
| GO:0035803 | egg coat formation | biological_process |
| GO:0007339 | binding of sperm to zona pellucida | biological_process |
| GO:2000344 | positive regulation of acrosome reaction | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0035804 | structural constituent of egg coat | molecular_function |
| GO:0032190 | acrosin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031124-2 | Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be located in extracellular space and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix. |
| ensembl_id | ENSDARG00000039828 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00030504 | False | 1781 | mRNA | 0.50 | 8 | 6253246 | 6258796 |
| TCONS_00030505 | False | 1557 | mRNA | 0.51 | 9 | 6253337 | 6258705 |
| TCONS_00030506 | False | 866 | mRNA | 0.48 | 6 | 6255434 | 6258432 |
| TCONS_00030507 | True | 531 | processed_transcript | 0.46 | 4 | 6256447 | 6258795 |
6,251,000
6,252,000
6,253,000
6,254,000
6,255,000
6,256,000
6,257,000
6,258,000
6,258,000
6,259,000
6,260,000
6,261,000
6,262,000
6,263,000
6,264,000
6,265,000
NC_007113.7
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_015186 | gng5 | coding | upstream | 4083 | 6243144 ~ 6249163 (+) |
| XLOC_015185 | NA | coding | upstream | 13928 | 6237781 ~ 6239318 (+) |
| XLOC_015184 | si:ch73-344o19.1 | coding | upstream | 55984 | 6181383 ~ 6197262 (+) |
| XLOC_015183 | fzr1b | coding | upstream | 103953 | 6126086 ~ 6149293 (+) |
| XLOC_015182 | aldh9a1b | coding | upstream | 161184 | 6067371 ~ 6092062 (+) |
| XLOC_015188 | otol1a | coding | downstream | 44843 | 6303639 ~ 6316167 (+) |
| XLOC_015189 | BX927289.1 | coding | downstream | 108906 | 6367702 ~ 6367816 (+) |
| XLOC_015190 | brinp3b | coding | downstream | 475312 | 6734108 ~ 6807174 (+) |
| XLOC_015191 | NA | coding | downstream | 596177 | 6854973 ~ 6855514 (+) |
| XLOC_015192 | rgs5b | coding | downstream | 627056 | 6885852 ~ 6889119 (+) |
| XLOC_015178 | NA | non-coding | upstream | 368842 | 5841108 ~ 5884404 (+) |
| XLOC_015176 | NA | non-coding | upstream | 516741 | 5731127 ~ 5736505 (+) |
| XLOC_015175 | NA | non-coding | upstream | 523571 | 5726464 ~ 5729675 (+) |
| XLOC_015166 | NA | non-coding | upstream | 1354956 | 4894856 ~ 4898290 (+) |
| XLOC_015194 | CR388040.1 | non-coding | downstream | 699717 | 6958513 ~ 6959134 (+) |
| XLOC_015197 | NA | non-coding | downstream | 816424 | 7075220 ~ 7105532 (+) |
| XLOC_015200 | NA | non-coding | downstream | 890358 | 7149154 ~ 7155191 (+) |
