XLOC_015202 (si:ch211-13f8.2)


Basic Information

Item Value
gene id XLOC_015202
gene name si:ch211-13f8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7213146 ~ 7236294 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030524
CCCCAGTCAAGTGTGACTTCTCACTGGTCTAATATATAGCACTACATGCTTCTGCGCCATCAGACACACTATGATGGACCCGAGAGCATCTGGAAAGCTTCTGCTTGGACTAGTAATGTTAGAGTCATGGATCGGATTTATTTATACTCACACTGACCTGGAGCCTGTCCTACATGAGACATCTCTACTCAACCCCAAAGTAGCCATTGCGATTTTGGCTCGAAACAGCGAACACAGTCTTCCTTATTTTTTAGGATGCATCGAGAGGCTGGATTATCCCAAGGACCGTATCTCTATCTGGGCTGCTACTGACCACAATACTGACAACACCACTGGAATGCTGCGTGAATGGATCGCTGGAGTGGAGGATTTGTATCATTCGGTACAGCTGCACACCATGGAGCAGGAGAAGAGTTCTTATGTGGATGAGCTGGGCCCCAAGCACTGGCCGGAGACTCGGTTCACTCATGTGATGAAGCTGAGGCAGGCGGCACTTAAATCAGCCCGGGCGCAGTGGGCAGACTACGTCCTGTTCACAGACAGTGATAACCTGCTTACAAACACACAAGTGCTGAATCAACTGATTTCTGAAAATCGGACGCTGGTGGCTCCAATGCTCGACTCAAGAACGCTCTATTCAAACTTCTGGTGTGGCATGACCTCACAGGGCTATTATAAGCGAACACCACATTATGTACCCATTCGAACCTGGAAGCGAACCGGTTGTCACCCGGTTCCCATGATTCACTCCACAATGTTGATAGACCTGCGCCGCAGAGCTAGTGAATTGCTGGCCTTTTACCCCGTGCACCATCACTATCTTTGGGCCCTCGATGATATCATGGCATTTGCTTTTTCTGCAAGACAAACAGTTGACTTTAAAATGGAAACTTCACAGTATCTGCACATTGTCTCCAAACCCAAAGACACCATGGCTTTCAATCAGGTCTACCTGATCAATCTGAAGCGTCGGGAAGATCGTAGAGATCGTATGCTGCGCTCGCTGGAAGTCCTGGGCATAGACGTCACCCTTACCGATGCGGTGGATGGCAAAGCCATGAATTCAACTCAGCTCAGGACTTTAGGAATTGAGATGCTTCCTGGTTTTAAAGATCCGTACTCTGACCGAGTGCTGACTAAGGGGGAAATTGGCTGCTTCCTTAGTCATTATAACATCTGGAAAAAGGTGGTGGAGCTCCAGCAACAGCAGGTGCTTGTACTGGAGGACGATGTCAGGTTTGAGACAAACTTTAAGAGCCGCCTCAACACCATCATGGAGGATGTGAAGCGATCAGGCCTCCAGTGGGACTTAATTTATGTGGGACGTAAGCGTTTGCAAATCAAGCATCCGGAGCGCTGGGTGGAGGGAGTGAAGAACCTGGTGAGCCCAGATTACTCGTATTGGACATTGGGATATGCCCTTTCACTGCAAGGAGCAAAGATACTTCTGGAAGCTCAGCCTCTCAGCAAGATGCTGCCCGTTGACGAGTTTCTACCTGTTATGTTCAACAAGCACCCCAAGAAGGAATACATGTCTCATTTTCAATTGAGAAACTTGAAGGCTTTCTCCGTTCAACCCTTGCTGCTGTTTCCCACACATTACACTGGAGAAGCAGGCTATTTCAGTGACACGGAGACCTCCAGCATCTGGGATGACGAGACCGTGTCCACTGACTGGGATCGTAATCGCATCCGTGGAGGAAAAACCACCACATCTGTCTCTGAGAGCAGCCCAAAGGATGAACTCTGAAGCTATCCTATTGAGAGACTATTTAATTATCTACATTGACGACCGGGGGGAGTGCTTCGTATAATAGATGCTTCAGTAAATTATGacttatttaaattacatctattTCAATAACAAAACGTATTTAAGTTTTCAGTATTTTCTGGAGTATTGAGTGTATTCTGACCCACAGTCTCTTATTAGCaattttatgtttctgtaggttaaACTATACAAACTAGGCAGCAAATTTGACTTTACCTTAAGGCTATTTGTCAAAACAAACACCTATATTACAAGAAAAGTGTCTTTAACACTTACCAGTCTATGGGTGCTCTAGAACCGCcattttcagactgttgaattTTTTTCTCTCGCAGTCGGATTGGCGCATTATACATTCACAGTGGTATGGGCCGTTAGGGGTGGTCgaatgtatatttaaattatctgttaatttttaatattaagatacagatcagagcaaaccaTTTCTCACTATTTAGAGGGCTATACCCCCATACATGTTGTTTTGACGTTTCTCACCctccccccaaacccccctgttTCAGTGACCAAACTATGGACTTAAcccaaaaatttaatttctgttaaTTGCTTACCCTCATGCCATTCCAAGtagtctagtaaaatattattaaacatatttgctgttttctataaaaaaaaaaccaaacatgTTCTGTCGATTTGTCACCTTGTGAGATTGttctacctcccattcaaaaaccttttgatgacgcaatatgctacccatgtgtgatatgaagctgtaatatcgcccTACCTACCTAATTGGCAGGGGCGCCGCTAGAGGGCGTAAAGTTAGGATGATTGTAAGGGCCCATACTTTTAGGGACTATTAGAGACATTATGAAAGGCCCGTTAaacaaccccccccccacccccgctcttcacttttatCCGCGATCCacataatctttattttaaatatttcccaaatgatggacattttcacagtttgtctgataatattttttcttccacagaaagtcttatttaatacaaataaagtgtttgttttatttaggccaAAATGaaagaagttttacattttttaataaacattttaaagtcaatattattagccccttagctatatttatatatata
>TCONS_00030525
ATGGACCCGAGAGCATCTGGAAAGCTTCTGCTTGGACTAGTAATGTTAGAGTCATGGATCGGATTTATTTATACTCACACTGACCTGGAGCCTGTCCTACATGAGACATCTCTACTCAACCCCAAAGTAGCCATTGCGATTTTGGCTCGAAACAGCGAACACAGTCTTCCTTATTTTTTAGGATGCATCGAGAGGCTGGATTATCCCAAGGACCGTATCTCTATCTGGGCTGCTACTGACCACAATACTGACAACACCACTGGAATGCTGCGTGAATGGATCGCTGGAGTGGAGGATTTGTATCATTCGGTACAGCTGCACACCATGGAGCAGGAGAAGAGTTCTTATGTGGATGAGCTGGGCCCCAAGCACTGGCCGGAGACTCGGTTCACTCATGTGATGAAGCTGAGGCAGGCGGCACTTAAATCAGCCCGGGCGCAGTGGGCAGACTACGTCCTGTTCACAGACAGTGATAACCTGCTTACAAACACACAAGTGCTGAATCAACTGATTTCTGAAAATCGGACGCTGGTGGCTCCAATGCTCGACTCAAGAACGCTCTATTCAAACTTCTGGTGTGGCATGACCTCACAGGGCTATTATAAGCGAACACCACATTATGTACCCATTCGAACCTGGAAGCGAACCGGTTGTCACCCGGTTCCCATGATTCACTCCACAATGTTGATAGACCTGCGCCGCAGAGCTAGTGAATTGCTGGCCTTTTACCCCGTGCACCATCACTATCTTTGGGCCCTCGATGATATCATGGCATTTGCTTTTTCTGCAAGACAAACAGGTGTGCAGATGTTCATTTGCAACAGAGAGCATTATGGGTATCTGCCACAGCCTCTGCAGATGAAGCAGACGCTGGAGGAGGAAGTGGAGAGTTTTAGCCACACTGTCACTGAGGCGCTAGTTGACTTTAAAATGGAAACTTCACAGTATCTGCACATTGTCTCCAAACCCAAAGACACCATGGCTTTCAATCAGGTCTACCTGATCAATCTGAAGCGTCGGGAAGATCGTAGAGATCGTATGCTGCGCTCGCTGGAAGTCCTGGGCATAGACGTCACCCTTACCGATGCGGTGGATGGCAAAGCCATGAATTCAACTCAGCTCAGGACTTTAGGAATTGAGATGCTTCCTGGTTTTAAAGATCCGTACTCTGACCGAGTGCTGACTAAGGGGGAAATTGGCTGCTTCCTTAGTCATTATAACATCTGGAAAAAGGTGGTGGAGCTCCAGCAACAGCAGGTGCTTGTACTGGAGGACGATGTCAGGTTTGAGACAAACTTTAAGAGCCGCCTCAACACCATCATGGAGGATGTGAAGCGATCAGGCCTCCAGTGGGACTTAATTTATGTGGGACGTAAGCGTTTGCAAATCAAGCATCCGGAGCGCTGGGTGGAGGGAGTGAAGAACCTGGTGAGCCCAGATTACTCGTATTGGACATTGGGATATGCCCTTTCACTGCAAGGAGCAAAGATACTTCTGGAAGCTCAGCCTCTCAGCAAGATGCTGCCCGTTGACGAGTTTCTACCTGTTATGTTCAACAAGCACCCCAAGAAGGAATACATGTCTCATTTTCAATTGAGAAACTTGAAGGCTTTCTCCGTTCAACCCTTGCTGCTGTTTCCCACACATTACACTGGAGAAGCAGGCTATTTCAGTGACACGGAGACCTCCAGCATCTGGGATGACGAGACCGTGTCCACTGACTGGGATCGTAATCGCATCCGTGGAGGAAAAACCACCACATCTGTCTCTGAGAGCAGCCCAAAGGATGAACTCTGA

Function

symbol description
si:ch211-13f8.2 Predicted to enable procollagen galactosyltransferase activity. Orthologous to human COLGALT2 (collagen beta(1-O)galactosyltransferase 2).

GO:

id name namespace
GO:0050211 procollagen galactosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-32 Predicted to enable procollagen galactosyltransferase activity. Orthologous to human COLGALT2 (collagen beta(1-O)galactosyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000078299

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030524 False 2884 mRNA 0.44 11 7213146 7236294
TCONS_00030525 True 1797 mRNA 0.49 12 7213219 7235160
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015201 si:ch211-13f8.1 coding upstream 3441 7192966 ~ 7209705 (+)
XLOC_015200 NA coding upstream 57955 7149154 ~ 7155191 (+)
XLOC_015199 zgc:110366 coding upstream 64697 7132281 ~ 7148449 (+)
XLOC_015198 vcam1a coding upstream 99235 7106837 ~ 7113911 (+)
XLOC_015197 NA coding upstream 107614 7075220 ~ 7105532 (+)
XLOC_015203 NA coding downstream 25054 7261348 ~ 7263211 (+)
XLOC_015204 si:dkeyp-106c3.3 coding downstream 43352 7279646 ~ 7286309 (+)
XLOC_015205 si:dkeyp-106c3.1 coding downstream 59221 7295515 ~ 7412581 (+)
XLOC_015206 CU929374.1 coding downstream 158496 7394790 ~ 7394908 (+)
XLOC_015207 NA coding downstream 275183 7511477 ~ 7514181 (+)
XLOC_015194 CR388040.1 non-coding upstream 254012 6958513 ~ 6959134 (+)
XLOC_015191 NA non-coding upstream 357632 6854973 ~ 6855514 (+)
XLOC_015189 BX927289.1 non-coding upstream 845330 6367702 ~ 6367816 (+)
XLOC_015208 NA non-coding downstream 290548 7526842 ~ 7529057 (+)
XLOC_015210 NA non-coding downstream 376872 7613166 ~ 7614060 (+)

Expression

Expression of XLOC_015202(si:ch211-13f8.2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Expression of XLOC_015202(si:ch211-13f8.2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_00552855_00564977 NA coding CI01000004 null 552548 ~ 565394 (-)