XLOC_015213


Basic Information

Item Value
gene id XLOC_015213
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7715792 ~ 7727248 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033473
GAGATTCACATGTTCTGCCTTTCCGAGTGAATGCCGAAGTCGCGAACGGACCATGTCTAGCGGTTCTGCTGATTACAACAGctCACGAGATCGAGACCATGGGGGGCCTGAAGGAATGGAGCCTGATGGTGTCATCGAGAGCAACTGGAATGAGATTACGGACAATTTCGATGACATGAACTTGAAGGAAACTCTCCTTCGTGGAATATATGCATATGGTTTTGAGAAACCCTCAGCAATTCAGCAGAGAGCTATAATTCCCTGCATAAAAGGTTATGATGTTATCGCGCAGGCCCAATCAGGGACTGGTAAAACGGCCACGTTTGCCATTTCCATCCTGCAGCAGCTGGAGATTGAGCAGAAAGAGACTCAGGCTCTGGTCCTGGCACCAACCCGAGAGCTCGCTCAGCAGGTATGCTGTACCTGAGCTCACAATAACACAATAAGATGTGTGTCTCAGACCAAGGCGGCATATTCTGGCAGTAGCCAAATTCAAGGTACTCTTTTGCTGTTCTTCCTGCTTTATCAGTCAATAAATGTGGATTTTGTTTGTAATTTGCATAATTTGATCATCTGTTCAGCAGGAAGCAGTCATCCATGTAGTTTTTCGGGCAGATTAATCGATCAATCATTCTTTAATGAGCTGGATTATTTACTGCTAGTGTTTGGAAATTAGGTTGTTAGACTGCCAGGTGATTTTTTTTGACAATTATTGTAACTGTATAGAGCTTTGCACAAGTATGAAATGATGGTATGACTATCTTTCGGGACTGACCTTTTGTGGAGAAGACCTTTTCAACTGATCATACTTGTCCAGTGCTTTGCATTAATGGTACACAGTACTTGTGTTTACTAGGTGTTCCTTTCATTTAAACTCTGCATTTTTGTCTATG
>TCONS_00030530
CTGCCTTTCCGAGTGAATGCCGAAGTCGCGAACGGACCATGTCTAGCGGTTCTGCTGATTACAACAGctCACGAGATCGAGACCATGGGGGGCCTGAAGGAATGGAGCCTGATGGTGTCATCGAGAGCAACTGGAATGAGATTACGGACAATTTCGATGACATGAACTTGAAGGAAACTCTCCTTCGTGGAATATATGCATATGGTTTTGAGAAACCCTCAGCAATTCAGCAGAGAGCTATAATTCCCTGCATAAAAGGTTATGATGTTATCGCGCAGGCCCAATCAGGGACTGGTAAAACGGCCACGTTTGCCATTTCCATCCTGCAGCAGCTGGAGATTGAGCAGAAAGAGACTCAGGCTCTGGTCCTGGCACCAACCCGAGAGCTCGCTCAGCAGGTATGCTGTACCTGAGCTCACAATAACACAATAAGATGTGTGTCTCAGACCAAGGCGGCATATTCTGGCAGTAGCCAAATTCAAGATTCAGAAGGTAATCTTGGCTTTGGGTGACTACATGGGTGCTTCATGCCATGCCTGCATTGGAGGCACCAATGTGCGGAACGAAATGCAAAAGCTCCAGGCGGAGGCTCCGCACATTGTGGTTGGCACACCAGGCCGTGTGTTTGACATGCTGAACAGGCGGTATCTGTCTCCCAAATGGATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTGAGCCGTGGCTTCAAGGATCAAATCTATGAGATTTTCCAGAAATTAAGCACAAACATTCAAGTTGTGCTGCTTTCGGCCACCATGCCTGCTGATGTGCTGGAGGTGACCACCAAGTTCATGCGTGAACCTGTCCGCATCCTGGTGAAAAAGGAGGAGCTGACTCTGGAGGG
>TCONS_00030531
CTTTCCGAGTGAATGCCGAAGTCGCGAACGGACCATGTCTAGCGGTTCTGCTGATTACAACAGctCACGAGATCGAGACCATGGGGGGCCTGAAGGAATGGAGCCTGATGGTGTCATCGAGAGCAACTGGAATGAGATTACGGACAATTTCGATGACATGAACTTGAAGGAAACTCTCCTTCGTGGAATATATGCATATGGTTTTGAGAAACCCTCAGCAATTCAGCAGAGAGCTATAATTCCCTGCATAAAAGGTTATGATGTTATCGCGCAGGCCCAATCAGGGACTGGTAAAACGGCCACGTTTGCCATTTCCATCCTGCAGCAGCTGGAGATTGAGCAGAAAGAGACTCAGGCTCTGGTCCTGGCACCAACCCGAGAGCTCGCTCAGCAGATTCAGAAGGTAATCTTGGCTTTGGGTGACTACATGGGTGCTTCATGCCATGCCTGCATTGGAGGCACCAATGTGCGGAACGAAATGCAAAAGCTCCAGGCGGAGGCTCCGCACATTGTGGTTGGCACACCAGGCCGTGTGTTTGACATGCTGAACAGGCGGTATCTGTCTCCCAAATGGATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTGAGCCGTGGCTTCAAGGATCAAATCTATGAGATTTTCCAGAAATTAAGCACAAACATTCAAGTTGTGCTGCTTTCGGCCACCATGCCTGCTGATGTGCTGGAGGTGACCACCAAGTTCATGCGTGAACCTGTCCGCATCCTGGTGAAAAAGGAGGAGCTGACTCTGGAGGGTATTAAGCAGTTTTACATCAATGTAGAACGAGAGGAGTGGAAGTTGGACACGCTGTGCGACCTCTATGAGACCCTGACAATCACGCAGGCTGTTATCTTCTTGAACACAAGAAGAAAGGTTGACTGGCTGACCGAGAAAATGCATGCCAGGGATTTCACCGTGTCTGCTTTGcatgGAGACATGGATCAGAAGGAGCGAGACATAATAATGAGAGAGTTTAGGTCTGGCTCCAGCAGAGTGCTCATTACTACAGATTTGTTGGCTCGTGGAATTGATGTTCAGCAAGTTTCGCTTGTCATCAACTATGACTTGCCTACAAATCGAGAGAACTACATCCATAGGATTGGCCGCGGAGGTCGGTTTGGAAGAAAAGGCGTAGCTATTAATTTCGTTACTGAGGAAGACAAAAGGATTCTTCGAGACATCGAGACGTTTTACAACACCACCGTTGAGGAGATGCCCATGAATGTCGCTGACCTGATTTAAACTCCTGGGGTTTTAATGTGGGGATTAGCTGTTGAATGATCACTTCCATTTGCGCTTATTTTATtggaagaaaaatatataaaaacgacTCTCCTCGATGCTGGCTGCGGATCCGACCTGCGAATTTGATACGTGACGTTGACTCTGTGTGGACGGTTGTAGACTCCAACCATTTCAGTATTCACTGGTGGTGGCGTATGCAAAACATGGGTTCTTTATTCTTTTTCAGGTATTTTTTCCTTAGTGTGTTTAAAATGTACTTGTTAGATGTTCTTCATCGTTTAGTAATTTACTTGTGGACTAAAAGATACAAGTGTTGCATTAAATCTGCCAATTATGTTATGCTAACATTCGTGTGCAGTTTAACTGTTCACTTCACCTACCCTTTTAGTAATATATAAAGGCACTTTTCAGTTTTGTggaatgtattaatttaaatgtatattattttatcaaGTCCTTTTTTCTGTGATGTCCTCTTTAAAGTTGGGTTATTACAGTATTCCATGTAGGGTTTGGCCCATTTGACAATAAACAGGATGATAATTCTGTCCA
>TCONS_00030532
GTATGAAATGATGGTATGACTATCTTTCGGGACTGACCTTTTGTGGAGAAGACCTTTTCAACTGATCATAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0042060 wound healing biological_process
GO:0030684 preribosome cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-2802 Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human EIF4A2 (eukaryotic translation initiation factor 4A2).

Ensembl:

ensembl_id ENSDARG00000016477 ENSDARG00000082639

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033473 False 893 lncRNA 0.43 4 7715792 7720713
TCONS_00030530 False 872 lncRNA 0.50 7 7715806 7723327
TCONS_00030531 False 1825 mRNA 0.45 11 7715810 7727248
TCONS_00030532 True 71 snoRNA 0.39 1 7720559 7720629
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Neighbor

gene id symbol gene type direction distance location
XLOC_015212 NA coding upstream 53691 7657298 ~ 7662101 (+)
XLOC_015211 NA coding upstream 61174 7647863 ~ 7654618 (+)
XLOC_015210 NA coding upstream 101732 7613166 ~ 7614060 (+)
XLOC_015209 ripk2 coding upstream 128132 7557912 ~ 7587660 (+)
XLOC_015208 NA coding upstream 186735 7526842 ~ 7529057 (+)
XLOC_015218 NA coding downstream 36659 7763907 ~ 7768273 (+)
XLOC_015219 kcnmb2 coding downstream 91120 7818368 ~ 7829400 (+)
XLOC_015220 si:ch211-38m6.6 coding downstream 120232 7847480 ~ 7874384 (+)
XLOC_015221 pcolce2a coding downstream 303986 8031234 ~ 8050498 (+)
XLOC_015222 chst2a coding downstream 385201 8112449 ~ 8114608 (+)
XLOC_015207 NA non-coding upstream 201611 7511477 ~ 7514181 (+)
XLOC_015223 BX248229.1 non-coding downstream 462037 8189285 ~ 8189400 (+)
XLOC_015225 NA non-coding downstream 757146 8484394 ~ 8488138 (+)
XLOC_015227 NA non-coding downstream 963410 8690658 ~ 8691029 (+)
XLOC_015231 NA non-coding downstream 1405337 9132585 ~ 9330209 (+)

Expression

Expression of XLOC_015213 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_015213 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network