XLOC_015219 (kcnmb2)


Basic Information

Item Value
gene id XLOC_015219
gene name kcnmb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7818368 ~ 7829400 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030537
ATTTTAAAAACCCTTACAGGTCTCGAGAGGAGCAAGAGGAGGCTGACGGTTATTGACGCAACATGCTTTCTTGAAATTTCATTGCTCTGCTTTGGCTCGAATCTATCGATACAGgTCTGTCCAGATTTCTTCTCACTGACAGGAATGAGACAAGATGTTCTTTGTGAAGGGGGTCAGAACAACACAAGCCACACAACAAAGGGTGATTTATAAGCGGTTGTGGGGACATGAGCTGAAGGACAAAAAAAGGACAGAGACGGCGCTGAAGGCTGGGGAGGACAGGGCCATTCTGCTGGGTTTGAGCATGGTGTTCAGCTCAGTCATGATGTACTTTGTGATTTGTATCACCATGGTGCGTGCTTATGCAGACAGTCTATTGATCGATGAGACCACCTGCACTGTGCTGAACTCCTCTCTGACCAAGGAAATCAACTGCTCCTACAACTGTGGCTCTGACTGCTGGCGAAGCTCGAAATACCCCTGTCTGCAGGTCTACGTCAGCCTGAATGCCACCGGTCGCATCGGCCTGCTCTCTCACAATGAGGAAATGCTGGATGTCAGTTCTGAGtgTTTTTATGTGCCAAAATGCCAGAAGGACCACACCGCCATGCGCGTTCTGATCCAGAATATTTCGGATCACCTGAAGATGCAGCAGCAGGTCAGGTGTTTCCACGATCCCAGCGAGCATCAGGCCAGTATCCTCCTGAAGCGAATCTACGGCAGCGCTTCGCTTTTACACTCGCTCTTCTGGCCATCCTGCATGTTATCCGGAGGAACGCTCATCATCCTCATGGTCAAGCTCACGCAATACCTCTCCATACTGTGTGAACAAATCGACAAAGCCCCGAAGTGAAAGCCGCACAGACATCGACTGACTAGGTGAAGCAAACGGAGGGAGCTTTTCATTTCTCCTTCAAATGGTTTTTCGGATTCCTGCTGTTCAAGGATTGACTGGAGATTGATGTTAGTCTTCCATGACTAAGCAATATTGTGTCCACAAATCATATCGCTGGAGTAGCGGCGTAAGCCAAATGGGCTTATAGTGCTTTTGGGATAAaggtattaaaaatataaacaatgcaATATGTATGCAGCTGTTTGAAGCAGCGTCTGACATCCTTTGAATAATCTTGTATAAATCATGTGTTTGTTggataatgtaaataaattcagGGCTCACTA

Function

symbol description
kcnmb2 Predicted to enable calcium-activated potassium channel activity and potassium channel regulator activity. Predicted to be involved in detection of calcium ion. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Orthologous to human KCNMB2 (potassium calcium-activated channel subfamily M regulatory beta subunit 2).

GO:

id name namespace
GO:0005513 detection of calcium ion biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function
GO:0015459 potassium channel regulator activity molecular_function

KEGG:

id description
ko04022 cGMP-PKG signaling pathway
ko04911 Insulin secretion
ko04270 Vascular smooth muscle contraction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-050320-97 Predicted to enable calcium-activated potassium channel activity and potassium channel regulator activity. Predicted to be involved in detection of calcium ion. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Orthologous to human KCNMB2 (potassium calcium-activated channel subfamily M regulatory beta subunit 2).

Ensembl:

ensembl_id ENSDARG00000006568

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030537 True 1182 mRNA 0.47 5 7818368 7829400
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015218 NA coding upstream 50095 7763907 ~ 7768273 (+)
XLOC_015213 NA coding upstream 91120 7715792 ~ 7727248 (+)
XLOC_015217 CT027646.1 coding upstream 94427 7723870 ~ 7723941 (+)
XLOC_015216 CT027646.4 coding upstream 94785 7723394 ~ 7723583 (+)
XLOC_015215 SNORA81 coding upstream 96978 7721212 ~ 7721390 (+)
XLOC_015220 si:ch211-38m6.6 coding downstream 18080 7847480 ~ 7874384 (+)
XLOC_015221 pcolce2a coding downstream 201834 8031234 ~ 8050498 (+)
XLOC_015222 chst2a coding downstream 283049 8112449 ~ 8114608 (+)
XLOC_015223 BX248229.1 coding downstream 359885 8189285 ~ 8189400 (+)
XLOC_015224 dipk2aa coding downstream 431709 8261109 ~ 8312199 (+)
XLOC_015225 NA non-coding downstream 654994 8484394 ~ 8488138 (+)
XLOC_015227 NA non-coding downstream 861258 8690658 ~ 8691029 (+)
XLOC_015231 NA non-coding downstream 1303185 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding downstream 1486919 9316319 ~ 9318279 (+)

Expression

Expression of XLOC_015219(kcnmb2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_015219(kcnmb2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_00238788_00241612 KCNMB2 coding CI01000004 null 238517 ~ 241901 (-)