XLOC_015221 (pcolce2a)


Basic Information

Item Value
gene id XLOC_015221
gene name pcolce2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8031234 ~ 8050498 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030541
ATGCGTACTGTAATACTTTTAGCGTGGATGTGACACGAGTTGCCTTCACTTACATGACTTAGGGAAACTGCTTCCTCCGGCTCCAGCAGAACAAACAGCACATTCATgagcagtcagtcagtcagtcaacagtttAGTACCTCTGGAGAATTCACTTCTTTTTCTCTGAATGTCACATTTGTTCAAACGCGCCTCATACAATGAGGATTATAATCTGGAGCATCGCGAGCACCTTTCTGTTCAGCGTCATTTTTACGCAAGGACGTCGAAGACCAGCTTTTACATGTGGCGGGAACTTTACTGGAGACACAGGAATGATTGGGAGTCAAGGGTACCCCGCTGTTTACCCACCCAACAACAAATGTGTGTGGAGAATTACAGTTCCTCAGGGGAGGCTCGTGTCCCTCTTGTTCCGAGTTTTGGATCTTGAGAGTGATAGTCTCTGCAGATACGACTTTGTTGATGTATATGATGGCCACATCAACGGGCAGCGTCTCGGCCGCTTTTGTGGTACCGCCAAACCCAGAGCACTGGTCACCAATGGAAACAAGATGCAAGTGGTCATGGTGTCGGACGCCAACACAGCTGGGAGTGGTTTTCTTGCTGTATACTCAGCGATCCGCCCAAATGAAAGAGTTGACCGGTACTGCGGGGGTCTTCTAGACAAACCCTCTGGGACGATAAAGACCCCTAACTGGCCAGATAAAGACTACCCGCCGGGAGTAACGTGTTCCTGGCATATTGTTGCTCCTCTAGACCAGATCATTGAGCTGAAGTTTGAGAAGTTTGATGTGGAGAGAGACAGCAACTGCCGCTATGACCATGTGGCTGTGTTTAATGGGGGAGAAACTAATGAGACACGTAAGATCGGCAAGTTCTGCGGAGACAGCCCACCCATGCCAATTCATTCAGACGGTCATCATCTCCTCATAACGTTTCTCTCCGACTTGAGTCTGACTGCTGATGGATTCATTGGCCATTACCGCTTTAAATGGAGGAGTCCCAGCACAGCGAGCGCCCCTTTGACCCCCGCGGGCACCATATCACCCAGCACACCACCCGCAGCTCTTACATATTCAGAAGAACtttgcaagcagaaatgtaaaagGACTGGAACAATTGAAAGTCATTACTGCTCTAGTAACTTTGTGATTACGGCCACTCTTATCTCAGCAGCCATGAGGGAGCAAAGCGTTCTTGCCACTTTTTCCATCATGCACCTTTATAAAGAAGGAAATTTAGCCATCCAACAAGCTGGGAAAACCATGAGCACCAAAGTTACGGTCCTCTGCAAACAATGCCCGCTGGTCAGAAGAGGGCTTAACTACATAGTCATGGGACAAACCGATGAACACGGACAAGGCGTTATTTCCCCTTATAACTTTGTGATGCTCTTCAAAACCAAAAAGCAACAGGATTTGGCCGTGCTGAAAAATATACGCTGCTGATGTGCACAGGTGACCAAAGCCGTGTCTGGATTTGCATTCACTTTATGTACATGCGTTTGATAACATCCATACTTGGACTCTTTTAGTAATAACGGTAACACAGTGTCTTTACTACAAGTAACATGAAAAGATTCCAGCGACAAGCAATTTGACTGTTTCGATATGACAGAAACATTTTAATACCAGCCACTGCATTTGTTAACATTGCAttcttcattatttaaaatatctggcTACCGAATGATGGGTGTTGTTGCTTTCATTTCAAACTTTCATTTTCCAACAACCttatttaacctttattttaatttctgtgaaattcagaattgattttaaagtgcttttactgGTTTATAAATCCCTCCATAATCTAGCCCCATTCTATCTCGCAGAGCTGCTTCATCCTTACACTCCTGTGAGATCTCTTAGGTCGAGTGAGCAGAATCTTCTGTCAGTTCCACAATCTAGGCTAAAACGTTgaggggacagagctttctctgtggcagGTCCTCGGTTGTGGAACACCTTGCCCCTTGAGATCAGATTGGCTCCATCATTATCCACTTTTAAATCACGTCTTAAAACATACcttttagcttggctttttaagattattttaatagttcattcTACCGCTATTTTGTACATCTTTACAGTTGTTTCGCTTGCTTTATttcttgtgtttatatatatgtcttttattttttattttttaacttgtcttatgtacagcactttggtcagtcttgtgactgctttaaaatgtgctttataaataaatgaacttgaacattttcaagatctgaggatCTGAACTCGCAACATGccaataaatgtcacgtaaaatgaTATCCAAGGCTACATTGGTAGCATTTAAGTAAGGTATAATCAACGGCTTGCCTTGTGTTAAAGGATTTTAATGCACGAAGTGAAGTGCATTAATATCCCTTAACGCACAGCAAGCCGTTGATTATCCCACTTATTCCATGGCTAGTTGCCAAAGTGAGGGTaagtttaaaatagttttgcTTTTTGCAACTCAATATTTGTCCgaattttggtcagttttgacatgTTAGATTTTCTAGTCCCTCCACTGAATCAGGCagggagggagagaaagagagagagagagagagatgtgcgtgctgtttataccaagcggcaacctcccgctctccctcaggaagccaatacagaagtaactaaaactgcaattcatttgaAATTCCGCTAGttctggccgctcctggctccaaaatagagcaaattttaattgagcccactgtttgAATGGCCAActctacagcagaaaaaaaggtgtttacagtctggtacaaaaaaagattttggttaatacagctaatattacccttcatgacaactgtgaggggggtgaatatttttataactcatctgtttcctttatattaagttatattaagtttgcataatcaAGGGAGTGGCCTcttgagtgacagttaggtctcgttgttcgccgtcacgtcacctcagctaaatcctgcagattagccactgaactctgcatatttatcgtatttctgtgttgttttatgtggctttacacagtcgactgtcttttggacttgtttccaaaattattagatggcatggtatgccgagtgcacttaattgtgctcacaaaccactcacgtggcctccgtttcccatgtgagtaaagttatatacttatataccatctctatttatgtatttgttttatttaagatcatttatcatttatatttatatttagagctgtaatgcactgcagaatctgacgaattgattagctataggctctagaacagtcatctgaagcgttgtcatacagtgttatgctggatttcatcaatagtcttacatttactaacacagactctatctgaagtgtttggaagtaattcgcgtttttcttttgttaaaaaacatcataagaacaatgtttagtggctcaatgtattacaacagtgtttttaaaagactaaactatttattgatatagtgtacaaccaagcacaagtggtcagaatacaaacaagtcacaggtgataaagtattaagcgttctcccaaagtaaagtgtgtctgaaccagttccaagcaaactgtcagcaggtgtctgtagctccgttcactctccgcctctttgcacTTGTTTGCTATCCCGccatgggtgtgatgacgcgcgaacaaaatggcgacggttggccattGGCCTAttggtgacgtcacggatactacgtccatatattttacagtctatggtttataCCTGTTAATAGTAAGATGCGATTTCATCAATCCAATCACAGGTGGACAAAAAAGACATTCCCAGTCACACCTGGAGTGTGTTTCCAGTTACACATGTTTCTATTGTCTACTTTCTACCAGTTCTCTGCCGAGGGAGCTCTGTATATTGGCTTTCTCTTAACATTACCTTTAATACTGGGCTACCTATAGCAGAATTTCCTCGATTTACATTTCATAACAAACATACAAATCttaataagtgaagtttttaaactaatttcgagagaagcacgtgatataattgaccgcagctggccgcctatctacactcattagttagccaatcagatttatcCTAActtactataagtagcctagctagatattactcccttatcttcgttttccagAGAAACCCccctgtcagggttctgccactctggtcttggaaattcttgttttggtggcagagctctgacactagctgtgtctggtcctgtttctgtctctgtgtgcgcgcgcgccatcgtgggtgtacgcagagtgtgcgcgctcccgcttgatgcggccgcacgcactctgcgtccctcagacacgcgcgctcttgtactcgtgtttgtgttttcgtctgtctgcagcgtggtgtttcattcccagcgtctcagtctagttggtttcggttctggtcggcgctgggataaagcatgcatgctgcgtgtgtgagcgcatggtgagtgttttcattcatcgtgtgctcgtgtcttgcgtctcttgtcaaagcacgtggcttggtgtttacattgtggtcacatgcttttgtcgtgtgcttcagtgttgtgcttgtcttgtcatgaacatgcggttaatgagttctctcattggctgcatgttcttgtcctgttttatgtgagcgcatggcttgtgttgtctctctgtgtcatgcgctctcccgtctattgtctagtcccaccctccttgttaactcattattagtttgtcatgttcacctgtgtgtcaatttacttttgcttaaaatcccctcatgttttcagtcctgtgccagttcgtcgtctaaACTCCCCATGTGTTCCTACTCTTGTCATGCCAGCCAAGTTTGTTTGTTAGTGtcatagttatgtttttccccctcggggtggtttttgttcttcttttgctttatttttattatcaataaatcatcctgttt
>TCONS_00030542
GAATTCACTTCTTTTTCTCTGAATGTCACATTTGTTCAAACGCGCCTCATACAATGAGGATTATAATCTGGAGCATCGCGAGCACCTTTCTGTTCAGCGTCATTTTTACGCAAGGACGTCGAAGACCAGCTTTTACATGTGGCGGGAACTTTACTGGAGACACAGGAATGATTGGGAGTCAAGGGTACCCCGCTGTTTACCCACCCAACAACAAATGTGTGTGGAGAATTACAGTTCCTCAGGGGAGGCTCGTGTCCCTCTTGTTCCGAGTTTTGGATCTTGAGAGTGATAGTCTCTGCAGATACGACTTTGTTGATGTATATGATGGCCACATCAACGGGCAGCGTCTCGGCCGCTTTTGTGGTACCGCCAAACCCAGAGCACTGGTCACCAATGGAAACAAGATGCAAGTGGTCATGGTGTCGGACGCCAACACAGCTGGGAGTGGTTTTCTTGCTGTATACTCAGCGATCCGCCCAAATGAAAGAGTTGACCGGTACTGCGGGGGTCTTCTAGACAAACCCTCTGGGACGATAAAGACCCCTAACTGGCCAGATAAAGACTACCCGCCGGGAGTAACGTGTTCCTGGCATATTGTTGCTCCTCTAGACCAGATCATTGAGCTGAAGTTTGAGAAGTTTGATGTGGAGAGAGACAGCAACTGCCGCTATGACCATGTGGCTGTGTTTAATGGGGGAGAAACTAATGAGACACGTAAGATCGGCAAGTTCTGCGGAGACAGCCCACCCATGCCAATTCATTCAGACGGTCATCATCTCCTCATAACGTTTCTCTCCGACTTGAGTCTGACTGCTGATGGATTCATTGGCCATTACCGCTTTAAATGGAGGAGTCCCAGCACAGCGAGCGCCCCTTTGACCCCCGCGGCTCTTACATATTCAGAAGAACtttgcaagcagaaatgtaaaagGACTGGAACAATTGAAAGTCATTACTGCTCTAGTAACTTTGTGATTACGGCCACTCTTATCTCAGCAGCCATGAGGGAGCAAAGCGTTCTTGCCACTTTTTCCATCATGCACCTTTATAAAGAAGGAAATTTAGCCATCCAACAAGCTGGGAAAACCATGAGCACCAAAGTTACGGTCCTCTGCAAACAATGCCCGCTGGTCAGAAGAGGGCTTAACTACATAGTCATGGGACAAACCGATGAACACGGACAAGGCGTTATTTCCCCTTATAACTTTGTGATGCTCTTCAAAACCAAAAAGCAACAGGATTTGGCCGTGCTGAAAAATATACGCTGCTGA
>TCONS_00030543
GgctccacttatagtgctgagaTATTTCAGGCAGGATATGCCATTTCAGCGTCACGGGTGTGAAACTTAAGCTTGCTCAGGAGAGGCTCTCGGTTGGTTTCCTTGTGTCACAGACAGCTAGAATAATAACTTTCTGCAACCACATGGATGGGCTTAACTACATAGTCATGGGACAAACCGATGAACACGGACAAGGCGTTATTTCCCCTTATAACTTTGTGATGCTCTTCAAAACCAAAAAGCAACAGGATTTGGCCGTGCTGAAAAATATACGCTGCTGATGTGCACAGGTGACCAAAGCCGTGTCTGGATTTGCATTCACTTTATGTACATGCGTTTGATAACATCCATACTTGGACTCTTTTAGTAATAACGGTAACACAGTGTCTTTACTACAAGTAACATGAAAAGATTCCAGCGACAAGCAATTTGACTGTTTCGATATGACAGAAACATTTTAATACCAGCCACTGCATTTGTTAACATTGCAttcttcattatttaaaatatctggcTACCG

Function

symbol description
pcolce2a Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human PCOLCE2 (procollagen C-endopeptidase enhancer 2).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-25 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Orthologous to human PCOLCE2 (procollagen C-endopeptidase enhancer 2).

Ensembl:

ensembl_id ENSDARG00000008450

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030541 False 4928 mRNA 0.43 9 8031234 8050498
TCONS_00030542 False 1271 mRNA 0.48 9 8031381 8047018
TCONS_00030543 True 520 processed_transcript 0.41 2 8045416 8047257
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Neighbor

gene id symbol gene type direction distance location
XLOC_015220 si:ch211-38m6.6 coding upstream 156850 7847480 ~ 7874384 (+)
XLOC_015219 kcnmb2 coding upstream 201834 7818368 ~ 7829400 (+)
XLOC_015218 NA coding upstream 262961 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 coding upstream 307293 7723870 ~ 7723941 (+)
XLOC_015216 CT027646.4 coding upstream 307651 7723394 ~ 7723583 (+)
XLOC_015222 chst2a coding downstream 61951 8112449 ~ 8114608 (+)
XLOC_015223 BX248229.1 coding downstream 138787 8189285 ~ 8189400 (+)
XLOC_015224 dipk2aa coding downstream 210611 8261109 ~ 8312199 (+)
XLOC_015225 NA coding downstream 433896 8484394 ~ 8488138 (+)
XLOC_015226 fubp1 coding downstream 598795 8649293 ~ 8663104 (+)
XLOC_015215 SNORA81 non-coding upstream 309844 7721212 ~ 7721390 (+)
XLOC_015214 CT027646.3 non-coding upstream 310225 7720939 ~ 7721009 (+)
XLOC_015227 NA non-coding downstream 640160 8690658 ~ 8691029 (+)
XLOC_015231 NA non-coding downstream 1082087 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding downstream 1265821 9316319 ~ 9318279 (+)

Expression

Expression of XLOC_015221(pcolce2a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.

Expression of XLOC_015221(pcolce2a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network