XLOC_015225


Basic Information

Item Value
gene id XLOC_015225
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8484394 ~ 8488138 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033476
attctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcatgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacgtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033238
aaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033239
cggttttccacaaggtaagtaaaaaatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033477
TACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttattaatttttttattttattgcaacactaagtagtccattctgtggccaatatgatataaagggcctaaaatgggactgatgtgatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaagattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtgaactattcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggatttaaggcaacatgtttcgatgcagttttctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatatttttagggTGGAGCACAGTATGCTGTTGTAGTTTTCATATAATTGATGAGTCAAACATGagatgtgttttaaattgcaagacgtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttgtggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgagaaggataagggtgttcataatgagaagtgcagtcactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatgttgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033240
TGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttcc

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0045110 intermediate filament bundle assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033476 False 1191 lncRNA 0.35 5 8484394 8488138
TCONS_00033238 False 841 lncRNA 0.32 4 8485011 8488138
TCONS_00033239 False 823 lncRNA 0.31 4 8485040 8488138
TCONS_00033477 False 2319 lncRNA 0.31 1 8485820 8488138
TCONS_00033240 True 699 lncRNA 0.36 3 8485831 8487964
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015224 dipk2aa coding upstream 172195 8261109 ~ 8312199 (+)
XLOC_015223 BX248229.1 coding upstream 294994 8189285 ~ 8189400 (+)
XLOC_015222 chst2a coding upstream 369786 8112449 ~ 8114608 (+)
XLOC_015221 pcolce2a coding upstream 433896 8031234 ~ 8050498 (+)
XLOC_015220 si:ch211-38m6.6 coding upstream 610010 7847480 ~ 7874384 (+)
XLOC_015226 fubp1 coding downstream 161155 8649293 ~ 8663104 (+)
XLOC_015227 NA coding downstream 202520 8690658 ~ 8691029 (+)
XLOC_015228 usp33 coding downstream 229017 8717155 ~ 8777496 (+)
XLOC_015229 zzz3 coding downstream 290352 8778490 ~ 8842472 (+)
XLOC_015230 pigk coding downstream 573747 9061885 ~ 9138497 (+)
XLOC_015218 NA non-coding upstream 716121 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 760453 7723870 ~ 7723941 (+)
XLOC_015216 CT027646.4 non-coding upstream 760811 7723394 ~ 7723583 (+)
XLOC_015215 SNORA81 non-coding upstream 763004 7721212 ~ 7721390 (+)
XLOC_015231 NA non-coding downstream 644447 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding downstream 828181 9316319 ~ 9318279 (+)
XLOC_015236 NA non-coding downstream 1163578 9651716 ~ 9657047 (+)
XLOC_015239 BX470264.2 non-coding downstream 1387391 9875529 ~ 9875645 (+)

Expression

Expression of XLOC_015225 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_015225 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network