XLOC_015227


Basic Information

Item Value
gene id XLOC_015227
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8690658 ~ 8691029 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033241
TGATTTATTGATTTGATTCAAATCATAATCCGATATGACGTCAACATTCCTGGAACATGTTCCACGTTCTAAAACAGTTCGAACGCGCACAAGCCGAGCGGCCATTTTCTACAGTACTACCGCGATTTATCTGCACGATCGAGGTAAGGAAGGACacgtttatttgttgttttatatgtattttaatgtttacgactttgtatattgcatatttgattactttttttatttgtagacTCAAGAACACAGCCAGCTTCACACATCTGAAAACTGTGACCACACAGGACATCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033241 True 292 lncRNA 0.38 2 8690658 8691029
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015226 fubp1 coding upstream 27554 8649293 ~ 8663104 (+)
XLOC_015225 NA coding upstream 202520 8484394 ~ 8488138 (+)
XLOC_015224 dipk2aa coding upstream 378459 8261109 ~ 8312199 (+)
XLOC_015223 BX248229.1 coding upstream 501258 8189285 ~ 8189400 (+)
XLOC_015222 chst2a coding upstream 576050 8112449 ~ 8114608 (+)
XLOC_015228 usp33 coding downstream 26126 8717155 ~ 8777496 (+)
XLOC_015229 zzz3 coding downstream 87461 8778490 ~ 8842472 (+)
XLOC_015230 pigk coding downstream 370856 9061885 ~ 9138497 (+)
XLOC_015231 NA coding downstream 441556 9132585 ~ 9330209 (+)
XLOC_015232 NA coding downstream 625290 9316319 ~ 9318279 (+)
XLOC_015218 NA non-coding upstream 922385 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 966717 7723870 ~ 7723941 (+)
XLOC_015216 CT027646.4 non-coding upstream 967075 7723394 ~ 7723583 (+)
XLOC_015236 NA non-coding downstream 960687 9651716 ~ 9657047 (+)
XLOC_015239 BX470264.2 non-coding downstream 1184500 9875529 ~ 9875645 (+)
XLOC_015249 FO704816.1 non-coding downstream 1514972 10206001 ~ 10206118 (+)

Expression

Expression of XLOC_015227 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_015227 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network