XLOC_015230 (pigk)


Basic Information

Item Value
gene id XLOC_015230
gene name pigk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9061885 ~ 9138497 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030556
GCTTCCTGGTTGTCATTGCAAATCTACACTGTCACTTGTACCGGTGACGAACGATAATGGATTATTccaatttatttacagtgtattcatGCCTTCTTCTGTTTGTTTCCATACCATGCGCATACAGCAATTATGTTGAGACCAAAGCTGGACAGTTTTTTAGCAGTGGACACACTAACAACTGGGCAGTACTGgtCTGCACTTCTAGATTCTGGTTTAATTATCGGCATGTGGCGAACACGCTTTCAGTATACAGGAGTGTTAAGAGACTGGGCATTCCCGACAGTCACATTGTTCTGATGCTAGCCGATGATATGGCCTGTAACTATAGAAACCCCAAACCAGCTACTGTGTTCAGTCATAAGAACATGGAGCTCAATGTGTATGGAGACGACGTGGAGGTGGATTACCGCGGATATGAGgtTACGGTAGAGAACTTTCTGCGGGTCCTAACGGGGCGTCTCCCTCTCAGTACCCCTCGATCCAAACGTCTGCTGTCAGACGACCGCAGTAACATTCTCATTTACCTGACAGGTCATGGTGGAAACGGCTTCCTGAAGTTCCAGGATTCTGAGGAGATCAGTAACATGGAGTTAGCTGATGCTTTTGAGCAGATGTGGCAAAAGAGACGgtaTAATGAATTGTTGTTCATCATAGACACGTGCCAGGGGGCCTCCATGTATGAGAGGTTTTACTCACCCAACATCATGGCTCTTGCTAGCAGCCAAGTAGGGGAGGACTCACTTTCACATCAGCCAGACTTGGCAATTGGGGTCCATTTGATGGACAAGTACACTTTTTACTTGCTGGAGTTTCTGGAGGAAGTCCACCCTGCTAGCCAAGCCAACATGAATGATCTGTTTAAAGTGTGCCCACAAAGTCAGTGTGTCTCAACTCCGGGCCACCGTACTGACCTGTTCCAAAGGGATCCGGGGAGTGTCCTCATCACTGACTTTTTCGGAAGTGTCCGGAAAGTGGAGATCACCAAGGACACAATCAGTCTGACGTGTCCTGTAGAGTCGCCAATGCAGAGGTCTGGAAGTGGTGATCTACAAGTTGAAACTTTTACGTATGTGGACCAACTTCCAGTTGCTGAAATTATTCATCAGAAACCCAAGCAGAAGGACTGGCACCCTCCTGATGGTTTCATTCTTGGGCTCTGGACTCTCATCCTGCTGGTGTTCTTCCAGACCTACGGCATCAAACATCTCAAACACATCTTCTGATTCCACAGAGATCAAAGAACCAACCGCTTGTAACTGACACCTTCATAAAAGATTCCACACACAATATTTGTTTGTGATAGGTTTGGTCAGAAAtagctttttattcatttttgataCGTTTCTTTTGGTTGTTTgctttgtatatatatttttggaagtCTTCTTACACTGAAATGTTCTTTGTTGTTTGCAGCTTTCTAGAGAAATCCATTCATAATTTAACACACAAACTTCCTTTTGACCTAAACAAAGACAC

Function

symbol description
pigk Predicted to enable GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGK (phosphatidylinositol glycan anchor biosynthesis class K).

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003923 GPI-anchor transamidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

ZFIN:

id description
ZDB-GENE-040625-162 Predicted to enable GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGK (phosphatidylinositol glycan anchor biosynthesis class K).

Ensembl:

ensembl_id ENSDARG00000024479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030556 True 1482 mRNA 0.45 11 9061885 9138497
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015229 zzz3 coding upstream 219413 8778490 ~ 8842472 (+)
XLOC_015228 usp33 coding upstream 284389 8717155 ~ 8777496 (+)
XLOC_015227 NA coding upstream 370856 8690658 ~ 8691029 (+)
XLOC_015226 fubp1 coding upstream 398781 8649293 ~ 8663104 (+)
XLOC_015225 NA coding upstream 573747 8484394 ~ 8488138 (+)
XLOC_015232 NA coding downstream 177822 9316319 ~ 9318279 (+)
XLOC_015233 CU929379.1 coding downstream 397524 9536021 ~ 9558915 (+)
XLOC_015234 dnajb4 coding downstream 413959 9552456 ~ 9560307 (+)
XLOC_015235 gipc2 coding downstream 422243 9560740 ~ 9590850 (+)
XLOC_015236 NA coding downstream 513219 9651716 ~ 9657047 (+)
XLOC_015223 BX248229.1 non-coding upstream 872485 8189285 ~ 8189400 (+)
XLOC_015218 NA non-coding upstream 1293612 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 1337944 7723870 ~ 7723941 (+)
XLOC_015239 BX470264.2 non-coding downstream 737032 9875529 ~ 9875645 (+)
XLOC_015249 FO704816.1 non-coding downstream 1067504 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 1146264 10284761 ~ 10285629 (+)

Expression

Expression of XLOC_015230(pigk) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_015230(pigk) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000003_02221239_02254635 PIGK, PIGK.S coding CI01000003 null 2221198 ~ 2254635 (-)