XLOC_015231


Basic Information

Item Value
gene id XLOC_015231
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9132585 ~ 9330209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033478
CCTCCTGTCACAGATCCatcttgcagtgtaaacacagtagCAATGAAACCTTACCCCacatagtcatgcagtgtgaaaacatctgtgatacGACTATTTTGAAATCCTGTAGTCTGAACAGCATTAATGACAGTGGTCATAAGCATAAAATCTCATGtctgtcatgattataaaggttcgAACACCCTTCAAGTAAAGCATGACCAATGATACTTACACAATTAAGTTTCTCTTTCAGATTTTAAGGcaaaacaagcaaacacaaaGATAAACAATGATTTCTGCATGGCGTCCACATACTTTCGTCATGTAGTGTTTATCACGGAGAAAATCAAGTACAACTCAGACATGAACAGCAGAAGCAGAGTGCGACAGCGGAGTGAAAGTGCTGTTTCTTGACCAGCTCTGTTTTATACCACATGACGAGCAAAATCAATAAAGAGGACAAGAAATGATGATCCTTGGGTCAGCACTCTGAGAAACTGAGCCGGCATCAATTGTTTTAATGAACAGCTTGGTCAAAGCAGTGAGCAGTATCTCATCCCCTTCCCTCCTTTCCATTCTATACATCAGTCTCTCATCCTTGTGCTGTATAGAGTTCTCCCTGCACATATCGagagtattttattttttccccaggcGAAAAACTGTGAGTGCTGGTCAAACATTCCCAGAGTGCTGCATTAGAAGATAAAGGCTGTCCAGGCAGAGCTGCCAAATGATGTCAGGATCCCAAGCTGATAAGAACATTCGTTACATACAGTATCGGTGAAGAAGAGTGTTTTTgatacataaaaatacaataaaaaaacactgaTAAGCACAGTGGACATCTCAAAGCAGTAGGGACGCATTAAGAGTGCTGCATTGTGTGCCGTTTTCTAGGATGCTACAACCTTTAGCTACAGTGGATGATCAAATTTACCTACTGATCTGACAACAGAATTTGGATAGCTGACTACAGAGTGTCAGtgttttaaataagcaaataaggCATAAAAATGAAGGTTGCTTTGCACAGTCAGTGTACGCTACACTTCATACAGGCACAAATTTGAGATCCGAAATCTGTCTTTTGCTGACAGAAGACCTACATAACGAATTCTGCTTTCTTTACATGGCACGTAACGACAGAATATCAGTTTATATTATACACTCTCAGATCAAGGAACACCTGGATTTGActaaatttgtttaataaataaatcaaaaatgaatTCCTTGACAATGTATTTGGTCGTTCAATGAATGTTTTCAATGTCACATGTTCCTAAACTGATGTGTGTGTATTGAAAgcaatgcaatctcatggcagtttgtaactttttgatcaagtggctaatttgtacagtCTTGTTTATGGAGTTTGAGGTCATGCCTTTGTGGCGAGGGGGTGGGGCTGAAAACAGAATGAGGAGACGTGGGGCTTACCACCATAGACAAAAGCCCAATTCTAATtcttttttgtacccctaccccttccccttggcccttaaaactgagtgggaagaggaagggcttcaaaatttacccctaagaattgggaacTGGgacactacagcacctgcacacgtaaTCATATGTCATTGCGATATCATGCTTCATATAAGAtcgacgatggcgactgctgtagttattccggttgtgttattattttggtatttatcttcaagaaatcactgaaggcatatattaagttatcataatgatatattgtggcaataagattgtggTATAATCATTCATACACAATTGTGTAgtgtaaatcagtggttctcaactggtttgaccatgggacccacatttttacatggtcatcaagccgcgacccaaaattttagaaactataatataattttaggaattataattaatttgtatttatttgttaacctACATATCTAGTGAAAGATAAAtgataagaaaatcaccaagacttacaaataaactatattttactgctctcatttaataaaatgtatcaaattatagaaatattacagagtaaaaacgacaaatactgtaaacagtggttagggaaAGGAAAAGTTTagttaccattaactaaactgaactgtttataaaacattaacactgatctggttgaactgaacagaaaccagcaaattaaagtaaaattattaaaatcatcataaccatttttataataatcaccagttGCTCTTCTGtttttgtgtgggctttcttggcctgtgcctgtacttgttttgaacaatGCTCTTTTGTAATGCTCTCAGCTATGGGAGTCTTCTTTGAAAATCATCCACAGGTTTGTTgttgcaactgggatgtttggtttctaaatgtcatttttatttagaaggtttcatgctctcttgtgagagcacctcactacatatgacacactgaggttttaagcctttttcgtcgtcaatatatgtaaatccacactttacatattcggggtcgtacttgcgctgaAATTTCATGTCAAACGGTACAGTTGTCGCacgtgcatttcaaaataaaagtcggatataagcaaaataagtttaaaattaaaatgtgttgttttttttgatcacacatcccgcgacccactgaaaatgttcccacgaCCCACCAGTTAAGAAACACTGTTGTAAATAGTACAAGTATGAGATTTGGGATGCACATGATGTTTTAATAGCACATCTAATATAGATTTTGGGAGGAAAGcagtatttagtttttaaatttagttctgttaatttatttattaaaattttgtcCAGCTATTTATGTGCACATCCGTTTCAGTGTAGCTATTTTTATCACCAGTACTAGGT

Function

GO:

id name namespace
GO:0061028 establishment of endothelial barrier biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033478 True 2810 lncRNA 0.37 2 9132585 9330209
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015229 zzz3 coding upstream 290113 8778490 ~ 8842472 (+)
XLOC_015228 usp33 coding upstream 355089 8717155 ~ 8777496 (+)
XLOC_015227 NA coding upstream 441556 8690658 ~ 8691029 (+)
XLOC_015226 fubp1 coding upstream 469481 8649293 ~ 8663104 (+)
XLOC_015225 NA coding upstream 644447 8484394 ~ 8488138 (+)
XLOC_015233 CU929379.1 coding downstream 205812 9536021 ~ 9558915 (+)
XLOC_015234 dnajb4 coding downstream 222247 9552456 ~ 9560307 (+)
XLOC_015235 gipc2 coding downstream 230531 9560740 ~ 9590850 (+)
XLOC_015236 NA coding downstream 321507 9651716 ~ 9657047 (+)
XLOC_015237 pcyt1aa coding downstream 425213 9755422 ~ 9779959 (+)
XLOC_015223 BX248229.1 non-coding upstream 943185 8189285 ~ 8189400 (+)
XLOC_015218 NA non-coding upstream 1364312 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 1408644 7723870 ~ 7723941 (+)
XLOC_015239 BX470264.2 non-coding downstream 545320 9875529 ~ 9875645 (+)
XLOC_015249 FO704816.1 non-coding downstream 875792 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 954552 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 1056270 10386479 ~ 10416272 (+)

Expression

Expression of XLOC_015231 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G10034 NA non-coding CM030121.1 CM030121.1 56129442 ~ 56130558 (-)
tiger barb (Puntius tetrazona) G8309 NA non-coding NC_056700.1 CM032069.1 774259 ~ 776958 (-)