XLOC_015232


Basic Information

Item Value
gene id XLOC_015232
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9316319 ~ 9318279 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033479
GTTGTACTCTATTTTAATTGTGAACTGATTATACCCCAGAATACAGTAAACTATTATTAGTAATAGAAATCATATTATTGCAAAAGAACTTATGCCTAACCTTCTCAATCCAACAAATGGATTTGCAATGAAGAACAGACATTCTTTACAGACCACAAAACAGACATAACAGGTAGCAAGACTGAATTTTACGCACCAACAATGTGAAATTCTTTGAAGAACACAGGACACAGTGCTTTGCAAAGGTTTTCAGACTCTTTTAGTATCTGAGTTACAAatccaaatttaaataaaatgctttacatttttataaaaatacaaatggtATATTCAGTACGTTATAAAGCTATATGCAGGCAATGACAGCTGCAAAGCCGGCTCCATAAGTCTTTTGTGTGATATGCACAGTTCTACTGAGACGTAATTGTATTCTATTTTGCCCAGGCAGATTGATATTTCAGTGTAGTCATTGACTCTGCAGCACCAGATATCCACAGTTAGGCTGAGTTCAGGGATTTGACAGGGCAATTGTAGGAAAATCACCTCTTAGGACACTCCATAGCTAGAATAATCCATTCttactttagtttttttaacaATATGCCAAGTCCTTGCTTTTGAAAAGCAGCCCCACTACATGACtccccataatatatatatatatatacaccttatatatatattatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033479 True 688 lncRNA 0.34 2 9316319 9318279

Neighbor

gene id symbol gene type direction distance location
XLOC_015230 pigk coding upstream 177822 9061885 ~ 9138497 (+)
XLOC_015229 zzz3 coding upstream 473847 8778490 ~ 8842472 (+)
XLOC_015228 usp33 coding upstream 538823 8717155 ~ 8777496 (+)
XLOC_015227 NA coding upstream 625290 8690658 ~ 8691029 (+)
XLOC_015226 fubp1 coding upstream 653215 8649293 ~ 8663104 (+)
XLOC_015233 CU929379.1 coding downstream 217742 9536021 ~ 9558915 (+)
XLOC_015234 dnajb4 coding downstream 234177 9552456 ~ 9560307 (+)
XLOC_015235 gipc2 coding downstream 242461 9560740 ~ 9590850 (+)
XLOC_015236 NA coding downstream 333437 9651716 ~ 9657047 (+)
XLOC_015237 pcyt1aa coding downstream 437143 9755422 ~ 9779959 (+)
XLOC_015225 NA non-coding upstream 828181 8484394 ~ 8488138 (+)
XLOC_015223 BX248229.1 non-coding upstream 1126919 8189285 ~ 8189400 (+)
XLOC_015218 NA non-coding upstream 1548046 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 1592378 7723870 ~ 7723941 (+)
XLOC_015239 BX470264.2 non-coding downstream 557250 9875529 ~ 9875645 (+)
XLOC_015249 FO704816.1 non-coding downstream 887722 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 966482 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 1068200 10386479 ~ 10416272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding NC_056700.1 CM032069.1 680687 ~ 782745 (+)
mexican tetra (Astyanax mexicanus) G9073 NA non-coding NC_035898.1 CM008301.1 8594824 ~ 8595863 (+)