XLOC_015232


Basic Information

Item Value
gene id XLOC_015232
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9316319 ~ 9318279 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033479
GTTGTACTCTATTTTAATTGTGAACTGATTATACCCCAGAATACAGTAAACTATTATTAGTAATAGAAATCATATTATTGCAAAAGAACTTATGCCTAACCTTCTCAATCCAACAAATGGATTTGCAATGAAGAACAGACATTCTTTACAGACCACAAAACAGACATAACAGGTAGCAAGACTGAATTTTACGCACCAACAATGTGAAATTCTTTGAAGAACACAGGACACAGTGCTTTGCAAAGGTTTTCAGACTCTTTTAGTATCTGAGTTACAAatccaaatttaaataaaatgctttacatttttataaaaatacaaatggtATATTCAGTACGTTATAAAGCTATATGCAGGCAATGACAGCTGCAAAGCCGGCTCCATAAGTCTTTTGTGTGATATGCACAGTTCTACTGAGACGTAATTGTATTCTATTTTGCCCAGGCAGATTGATATTTCAGTGTAGTCATTGACTCTGCAGCACCAGATATCCACAGTTAGGCTGAGTTCAGGGATTTGACAGGGCAATTGTAGGAAAATCACCTCTTAGGACACTCCATAGCTAGAATAATCCATTCttactttagtttttttaacaATATGCCAAGTCCTTGCTTTTGAAAAGCAGCCCCACTACATGACtccccataatatatatatatatatacaccttatatatatattatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033479 True 688 lncRNA 0.34 2 9316319 9318279
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015230 pigk coding upstream 177822 9061885 ~ 9138497 (+)
XLOC_015229 zzz3 coding upstream 473847 8778490 ~ 8842472 (+)
XLOC_015228 usp33 coding upstream 538823 8717155 ~ 8777496 (+)
XLOC_015227 NA coding upstream 625290 8690658 ~ 8691029 (+)
XLOC_015226 fubp1 coding upstream 653215 8649293 ~ 8663104 (+)
XLOC_015233 CU929379.1 coding downstream 217742 9536021 ~ 9558915 (+)
XLOC_015234 dnajb4 coding downstream 234177 9552456 ~ 9560307 (+)
XLOC_015235 gipc2 coding downstream 242461 9560740 ~ 9590850 (+)
XLOC_015236 NA coding downstream 333437 9651716 ~ 9657047 (+)
XLOC_015237 pcyt1aa coding downstream 437143 9755422 ~ 9779959 (+)
XLOC_015225 NA non-coding upstream 828181 8484394 ~ 8488138 (+)
XLOC_015223 BX248229.1 non-coding upstream 1126919 8189285 ~ 8189400 (+)
XLOC_015218 NA non-coding upstream 1548046 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 1592378 7723870 ~ 7723941 (+)
XLOC_015239 BX470264.2 non-coding downstream 557250 9875529 ~ 9875645 (+)
XLOC_015249 FO704816.1 non-coding downstream 887722 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 966482 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 1068200 10386479 ~ 10416272 (+)

Expression

Expression of XLOC_015232 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding NC_056700.1 CM032069.1 680687 ~ 782745 (+)
mexican tetra (Astyanax mexicanus) G9073 NA non-coding NC_035898.1 CM008301.1 8594824 ~ 8595863 (+)