XLOC_015236


Basic Information

Item Value
gene id XLOC_015236
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9651716 ~ 9657047 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033480
GGACCACTGAGCTGTAGTCTCATGACATCATCACCACACCTCAACTGTGGAGACATGGCTTCCCAGGCAGCTTCAGAAGAACTGTAGAGTTGACCTTTAATTGTGGATTTCTCCCGCAGGTCTCCCACAGAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033481
TTTATACCTGACATCGTCACTGAGAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033483
GGAAacttttatagtttattttggtTATAGTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGtttcaaaaacacagatttctttacaactcgacaaggcatctttggatatcttccttctctttggatataaaCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033482
GGAAacttttatagtttattttggtTATAGTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGtttcaaaaacacagatttctttacaactcgacaaggcatctttggatatcttccttctctttggatataaaATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033485
GTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033484
GTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033486
GAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033480 False 753 lncRNA 0.44 5 9651716 9657047
TCONS_00033481 False 644 lncRNA 0.42 5 9652000 9657047
TCONS_00033483 False 772 lncRNA 0.40 6 9652353 9657047
TCONS_00033482 False 769 lncRNA 0.40 6 9652353 9657047
TCONS_00033485 False 672 lncRNA 0.42 5 9652382 9657047
TCONS_00033484 False 669 lncRNA 0.42 5 9652382 9657047
TCONS_00033486 True 601 lncRNA 0.42 5 9652401 9657047
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_015235 gipc2 coding upstream 60866 9560740 ~ 9590850 (+)
XLOC_015234 dnajb4 coding upstream 91409 9552456 ~ 9560307 (+)
XLOC_015233 CU929379.1 coding upstream 92801 9536021 ~ 9558915 (+)
XLOC_015231 NA coding upstream 321507 9132585 ~ 9330209 (+)
XLOC_015232 NA coding upstream 333437 9316319 ~ 9318279 (+)
XLOC_015237 pcyt1aa coding downstream 98375 9755422 ~ 9779959 (+)
XLOC_015238 anxa13l coding downstream 164710 9821757 ~ 9842240 (+)
XLOC_015239 BX470264.2 coding downstream 218482 9875529 ~ 9875645 (+)
XLOC_015240 CR956623.1 coding downstream 261631 9918678 ~ 9941405 (+)
XLOC_015241 tsen15 coding downstream 289074 9946121 ~ 9957805 (+)
XLOC_015227 NA non-coding upstream 960687 8690658 ~ 8691029 (+)
XLOC_015225 NA non-coding upstream 1163578 8484394 ~ 8488138 (+)
XLOC_015223 BX248229.1 non-coding upstream 1462316 8189285 ~ 8189400 (+)
XLOC_015249 FO704816.1 non-coding downstream 548954 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 627714 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 729432 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 906452 10563499 ~ 10564386 (+)

Expression

Expression of XLOC_015236 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Expression of XLOC_015236 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network