XLOC_015236


Basic Information

Item Value
gene id XLOC_015236
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9651716 ~ 9657047 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033480
GGACCACTGAGCTGTAGTCTCATGACATCATCACCACACCTCAACTGTGGAGACATGGCTTCCCAGGCAGCTTCAGAAGAACTGTAGAGTTGACCTTTAATTGTGGATTTCTCCCGCAGGTCTCCCACAGAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033481
TTTATACCTGACATCGTCACTGAGAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033483
GGAAacttttatagtttattttggtTATAGTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGtttcaaaaacacagatttctttacaactcgacaaggcatctttggatatcttccttctctttggatataaaCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033482
GGAAacttttatagtttattttggtTATAGTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGtttcaaaaacacagatttctttacaactcgacaaggcatctttggatatcttccttctctttggatataaaATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033485
GTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033484
GTCACATATTTTTCAGGTTGAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGGTGAATCTAAAATTCTTTCCTTCAGGTCCATGGTGTCAAGAAACTGCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC
>TCONS_00033486
GAGTTCTCGCAGGCAGTGCAAGAAAGAAAAAGTTTGGTGTTACAGTCACTGGACAGCTCTAATGCCAACTCTCAGATATCCATGGAGACCGTCAACACTGGCACTGGGTGAATACCTTCAGTGTACTGTTGCGGACAATCCAGATGGAGCAGGAGTATTTCCAGACAGTGGACTCTCACCAGATCTCTGTCCTGGGCTTCCAGGATGTCTAAGATACAATAGAGAGTCCCAGGAGAGGATGCACAGTTCTCAGCTCCAATTACAACAAGACACTCCGGTATGCTGTCAGTTCTGTGGTTCAAGAGCATGGCCTCCTTTAGATTTGGTTTTTGTAGAGTCGCAAGAGGACTTCTGCTGTGAGAACTACAGAGAGTTGTTTGAGATCATGGCCCatgaaaaacatctgaaaagttCTGAAGCAAGGTCTAGCAGACCTGCTCAACTGGATGACCCTTTCTTTGAGGAAGATGAAGATTTACAAGAGAAATCACAGGGAAATGGAAAGCTTAGGTTTGTGTTAAACTATATACTAGTTTTATaagttaaacaaatttaaataggaaataaaaaattttaatcagCAAGGCACATTGAACTTAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033480 False 753 lncRNA 0.44 5 9651716 9657047
TCONS_00033481 False 644 lncRNA 0.42 5 9652000 9657047
TCONS_00033483 False 772 lncRNA 0.40 6 9652353 9657047
TCONS_00033482 False 769 lncRNA 0.40 6 9652353 9657047
TCONS_00033485 False 672 lncRNA 0.42 5 9652382 9657047
TCONS_00033484 False 669 lncRNA 0.42 5 9652382 9657047
TCONS_00033486 True 601 lncRNA 0.42 5 9652401 9657047

Neighbor

gene id symbol gene type direction distance location
XLOC_015235 gipc2 coding upstream 60866 9560740 ~ 9590850 (+)
XLOC_015234 dnajb4 coding upstream 91409 9552456 ~ 9560307 (+)
XLOC_015233 CU929379.1 coding upstream 92801 9536021 ~ 9558915 (+)
XLOC_015231 NA coding upstream 321507 9132585 ~ 9330209 (+)
XLOC_015232 NA coding upstream 333437 9316319 ~ 9318279 (+)
XLOC_015237 pcyt1aa coding downstream 98375 9755422 ~ 9779959 (+)
XLOC_015238 anxa13l coding downstream 164710 9821757 ~ 9842240 (+)
XLOC_015239 BX470264.2 coding downstream 218482 9875529 ~ 9875645 (+)
XLOC_015240 CR956623.1 coding downstream 261631 9918678 ~ 9941405 (+)
XLOC_015241 tsen15 coding downstream 289074 9946121 ~ 9957805 (+)
XLOC_015227 NA non-coding upstream 960687 8690658 ~ 8691029 (+)
XLOC_015225 NA non-coding upstream 1163578 8484394 ~ 8488138 (+)
XLOC_015223 BX248229.1 non-coding upstream 1462316 8189285 ~ 8189400 (+)
XLOC_015249 FO704816.1 non-coding downstream 548954 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 627714 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 729432 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 906452 10563499 ~ 10564386 (+)

Expression


Co-expression Network