XLOC_015237 (pcyt1aa)


Basic Information

Item Value
gene id XLOC_015237
gene name pcyt1aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9755422 ~ 9779959 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030560
TGGCTTCTGTCAAATCGGAAGGTCTGAGATCACGAATATCGAGACATTTAAATCGCCGTACACTTCCGACTCCTGTCAGCCTTCGACTTGAGGAAACCCATAAACCTACACCTGCAAAGAGTCTTTCATCACCACCTTACCGCAAAACGCACATTAAAGCACACGGAGCCTGAATGGAGGCCCACGGTTCAGCGCGACTGTcaaggaagagaaagagagatggtTCAAACGGAGAGCCAGAGGAAGGAGAAAAACCACTGAAGTTCAAAAGATGCACGGTGGGTCTGAAATATCCAGCTCCTTATGCAGATCAGCTCGAGTCAATGGAAGATAAGCAGTATCAGCGTGTCACCATAGAGGAAGCTCGCAGAGGCACGCCACCCGACAGACCTGTGCGGGTGTACGCTGATGGGATCTTCGACATGTTCCACTCAGGACATGCTCGCGCTCTCATGCAGGCTAAATGCCTCTTTCCAAACACTCACCTTATTGTAGGTGTTTGCAGTGATGACCTCACGCACAAGCTAAAGGGCTTCACCGTCATGAACGAGGACGAGCGCTATGATGCTGTTAGTCACTGTCGCTATGTGGATGAGGTGGTCCGGAATGCCCCATGGACTCTTACACCAGAGTTCCTCACCAAACATCGGATTGACTTTGTGGCCCATGATGATATCCCATACTCCTCAGCTGACAGTGATGATGTTTACAAGCACATCAAAGATGCAGGAATGTTTGCACCAACCCAAAGGACAGAGGGCATCTCCACCTCTGACATCATCACGCGCATCGTGCGAGATTATGATGTGTACGTCAGACGGAATCTTCAGCGTGGCTACACTGCAAAAGAGCTGAACGTCAGCTTCATCAATGAAAAGAAGTACAACCTTCAGGAGCGTGTGGACAAGGTGAAGAAGAAGGTGAAGGACGTGGAGGAGAAAAGTAAAGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTGATCCAGAAATGGGAAGAGAAGTCCCGGGAATTCATTGGCAACTTCCTGCAGATGTTTGGACCGGAGGGAGCACTGAAGCACATGCTGAAGGAGGGTAAAGGTCGAATGCTTCAGGCCATCAGTCCAAGGCAGAGTCCCAGCAGCAGTCCCACACGAGAGCGCTCGCCTTCCCCAACCTTCCGTCTGCCCTTCTTCAACAAAACCTCCCCGCCGTCCTCCCCATCCTCACACCACAGCAGTGCCCTGTCCGGCTACACCTACGCCGCCCGTGGACAGGCCATCAGCGAGGACGAGGAGGACGACGAAGATTAGAGTGCCAAAGCACACCACACATCTGTCTTCCAACACCGGCAAGCCAACCTCAGAAACCAAGCAATCCCTTCACCAGTTTTGCGTTCTGTGTTATTAACCCATATGAAGGCTTAAAACGGAGTGCTGTGCAGAACTTGTTAACTGTGAGTCACTTACGGTGGTTTTTACGTCAATGTCAGCGATGGGATGTGAGTATTTAAACGCGTGGGATTGGCTTTTGTGGTGTTTTAGATCGAGTGCTCATGGTATTGAGTTtccttttaatttcagttttaaaaacttttgttCTTATTATTATAGTACGTAATTGTTTGACATCTCTCAGGTCACGTGTCTCTTCTTATAATGGCCGAGATTGATGTTTGATGTCCAAAACACTGCAACTCATAACTGTAAGATGACTACAAATAACTATACTAAAAGAGCTGTCGCACAA
>TCONS_00030561
ATAAAGGAATGACTGGAATGAGGAAGAATTCGGGCAACGTTTCCAAAGACTGTTTCCACACAGCTGTGTTCCTGTTGACCTAAGCTCAGAGCCTGAATGGAGGCCCACGGTTCAGCGCGACTGTcaaggaagagaaagagagatggtTCAAACGGAGAGCCAGAGGAAGGAGAAAAACCACTGAAGTTCAAAAGATGCACGGTGGGTCTGAAATATCCAGCTCCTTATGCAGATCAGCTCGAGTCAATGGAAGATAAGCAGTATCAGCGTGTCACCATAGAGGAAGCTCGCAGAGGCACGCCACCCGACAGACCTGTGCGGGTGTACGCTGATGGGATCTTCGACATGTTCCACTCAGGACATGCTCGCGCTCTCATGCAGGCTAAATGCCTCTTTCCAAACACTCACCTTATTGTAGGTGTTTGCAGTGATGACCTCACGCACAAGCTAAAGGGCTTCACCGTCATGAACGAGGACGAGCGCTATGATGCTGTTAGTCACTGTCGCTATGTGGATGAGGTGGTCCGGAATGCCCCATGGACTCTTACACCAGAGTTCCTCACCAAACATCGGATTGACTTTGTGGCCCATGATGATATCCCATACTCCTCAGCTGACAGTGATGATGTTTACAAGCACATCAAAGATGCAGGAATGTTTGCACCAACCCAAAGGACAGAGGGCATCTCCACCTCTGACATCATCACGCGCATCGTGCGAGATTATGATGTGTACGTCAGACGGAATCTTCAGCGTGGCTACACTGCAAAAGAGCTGAACGTCAGCTTCATCAATGAAAAGAAGTACAACCTTCAGGAGCGTGTGGACAAGGTGAAGAAGAAGGTGAAGGACGTGGAGGAGAAAAGTAAAGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTGATCCAGAAATGGGAAGAGAAGTCCCGGGAATTCATTGGCAACTTCCTGCAGATGTTTGGACCGGAGGGAGCACTGAAGCACATGCTGAAGGAGGGTAAAGGTCGAATGCTTCAGGCCATCAGTCCAAGGCAGAGTCCCAGCAGCAGTCCCACACGAGAGCGCTCGCCTTCCCCAACCTTCCGTCTGCCCTTCTTCAACAAAACCTCCCCGCCGTCCTCCCCATCCTCACACCACAGCAGTGCCCTGTCCGGCTACACCTACGCCGCCCGTGGACAGGCCATCAGCGAGGACGAGGAGGACGACGAAGATTAG

Function

symbol description
pcyt1aa Predicted to enable choline-phosphate cytidylyltransferase activity and phosphatidylcholine binding activity. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be active in endoplasmic reticulum. Is expressed in swim bladder. Human ortholog(s) of this gene implicated in spondylometaphyseal dysplasia with cone-rod dystrophy. Orthologous to human PCYT1A (phosphate cytidylyltransferase 1A, choline).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004105 choline-phosphate cytidylyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-108 Predicted to enable choline-phosphate cytidylyltransferase activity and phosphatidylcholine binding activity. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be active in endoplasmic reticulum. Is expressed in swim bladder. Human ortholog(s) of this gene implicated in spondylometaphyseal dysplasia with cone-rod dystrophy. Orthologous to human PCYT1A (phosphate cytidylyltransferase 1A, choline).

Ensembl:

ensembl_id ENSDARG00000011233

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030560 False 1734 mRNA 0.49 9 9755422 9779959
TCONS_00030561 True 1221 mRNA 0.52 9 9757453 9779523

Neighbor

gene id symbol gene type direction distance location
XLOC_015236 NA coding upstream 98375 9651716 ~ 9657047 (+)
XLOC_015235 gipc2 coding upstream 164572 9560740 ~ 9590850 (+)
XLOC_015234 dnajb4 coding upstream 195115 9552456 ~ 9560307 (+)
XLOC_015233 CU929379.1 coding upstream 196507 9536021 ~ 9558915 (+)
XLOC_015231 NA coding upstream 425213 9132585 ~ 9330209 (+)
XLOC_015238 anxa13l coding downstream 41798 9821757 ~ 9842240 (+)
XLOC_015239 BX470264.2 coding downstream 95570 9875529 ~ 9875645 (+)
XLOC_015240 CR956623.1 coding downstream 138719 9918678 ~ 9941405 (+)
XLOC_015241 tsen15 coding downstream 166162 9946121 ~ 9957805 (+)
XLOC_015242 sec22ba coding downstream 190983 9970942 ~ 9983661 (+)
XLOC_015232 NA non-coding upstream 437143 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1064393 8690658 ~ 8691029 (+)
XLOC_015225 NA non-coding upstream 1267284 8484394 ~ 8488138 (+)
XLOC_015249 FO704816.1 non-coding downstream 426042 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 504802 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 606520 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 783540 10563499 ~ 10564386 (+)

Expression

Expression of XLOC_015237(pcyt1aa) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_015237(pcyt1aa) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009173 pcyt1a,LOC103040438 coding CM030126.1 CM030126.1 27757223 ~ 27768167 (+)