Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_015239 (BX470264.2)

Basic Information

Item	Value
gene id	XLOC_015239
gene name	BX470264.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	9875529 ~ 9875645 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030571
acacacagccatatcaccctgcagcatAAGACCGGCtactcactgaagccaagcagggctgagcctggtcagtacctggatgggagaccactagggaatactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108522

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00030571	True	117	rRNA	0.54	1	9875529	9875645

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015238	anxa13l	coding	upstream	33289	9821757 ~ 9842240 (+)
XLOC_015237	pcyt1aa	coding	upstream	95570	9755422 ~ 9779959 (+)
XLOC_015236	NA	coding	upstream	218482	9651716 ~ 9657047 (+)
XLOC_015235	gipc2	coding	upstream	284679	9560740 ~ 9590850 (+)
XLOC_015234	dnajb4	coding	upstream	315222	9552456 ~ 9560307 (+)
XLOC_015240	CR956623.1	coding	downstream	43033	9918678 ~ 9941405 (+)
XLOC_015241	tsen15	coding	downstream	70476	9946121 ~ 9957805 (+)
XLOC_015242	sec22ba	coding	downstream	95297	9970942 ~ 9983661 (+)
XLOC_015243	slc35a3b	coding	downstream	114846	9990491 ~ 10040264 (+)
XLOC_015244	cmpk	coding	downstream	188102	10063747 ~ 10076929 (+)
XLOC_015231	NA	non-coding	upstream	545320	9132585 ~ 9330209 (+)
XLOC_015232	NA	non-coding	upstream	557250	9316319 ~ 9318279 (+)
XLOC_015227	NA	non-coding	upstream	1184500	8690658 ~ 8691029 (+)
XLOC_015225	NA	non-coding	upstream	1387391	8484394 ~ 8488138 (+)
XLOC_015249	FO704816.1	non-coding	downstream	330356	10206001 ~ 10206118 (+)
XLOC_015251	NA	non-coding	downstream	409116	10284761 ~ 10285629 (+)
XLOC_015252	BX927121.1	non-coding	downstream	510834	10386479 ~ 10416272 (+)
XLOC_015253	NA	non-coding	downstream	687854	10563499 ~ 10564386 (+)
XLOC_015254	NA	non-coding	downstream	728868	10604513 ~ 10607329 (+)

Expression

Co-expression Network