XLOC_015241 (tsen15)


Basic Information

Item Value
gene id XLOC_015241
gene name tsen15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9946121 ~ 9957805 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030574
GAAAAGCGACTTACTAAATATTCATAACAACAGCCTTCGGGGTAGTAGGATTCGCAATTCACACATGTTCTAGTGTACGCGCACATGGTAAATCAGCAAACACGATTTTTGCCACACGCATTGATTCATTATGGGCTTTTAAAAAACGGAAGGAGAGTTGATAATTGTGATGGACGAAGCAAATCCAGCAAATCCTCCTCCGAACTGGATCCAGCAGCACACTGTCTACCAAGAGCTGATGCGTTTAGAAGTCGGAGACAGTGTTCAAGTACATGCTGCCTTCCTGGTGTACATGGATCTGACGGAAGTGCGTAAATGGAAAGATGTGGTCGGGGTTTCCTGTCCGGAGTTACAGGCGGTTCTTCTGGAGGGTCGAGAGAAGGAAGGAGAATCGGTCCAGATGATTTACCCTCTGCCTTCACACAGATCCATCAAGCACAGAGAGTTGCGCAGTATATTAGACAGAGGTTCCCCTATGCTCTTGTGTGCGGTGGCTTCTGACTCCACTCTGGTGTACCAGAGATTATGTGACGGCTTTCTAACTCCTGACCCTCCCGTGGACATCCAAGACCAAGGTCGCCGACAGCATCGCAAACGGAGGTTACAGACGTGATGGATTGTGATTTGAAGTGAGAATCTGGTCTGATTTATGATTGATGTTGCCGTTAAACTGGCATATGTAAAaacatatttgaataattttacgTTTTAAGCCAGTGGGGTTTAAATGAAAGAAATGAAAACATTTCTGCATTTGTCTAAGTGTGTGTTTACATATACATAACaattatacacagtacacatatgTAATCGCAAAAATGTAAATAGTTTATGTAATACATTACAGAAACATAAGAAAAGCTTGAAAACGGTACCTCATGAAAACAACATCACTTAGCTGCTTTTCTTTACCTCAGTATTTGAAACAGCTTATGTTTTGAATGTGATACACAATTTCCACTGACACAGGAAGACAGGGCAGGTCATATTCAGCAGCTTCTTCCActttaaaataagacaaaatctCCAATAGGTGTTTGTTTACATCACAGCAGAGCATTGTCAAGCCGCATTTGGTAACttgtcatagatatatacattagatgtcgcctaacctgttgttgtctattggaaggaatgcgtcagtagagccgccattttggtacagggtagcgctcctttgaaatgaatgcgggaccaagctgcagtggaggactgtggccatccaaagccagagatatacacatatacacatatatctatgatcgggagttttcctggaggtCAGTatgcagttatttttttttattacgaaagttataattttacatcacttttctacattgatggatcagtgatcgcacaacattcctgacaaaaagcttgtgtttatgtgtatgGAAATgaactatccaccctccctgttaaatttgatctgatccgtgtcctgaaacacagctcctctcctgctttcacttttcatactgacggagggagcgattcatttgtgaatgaatcgcTACGAAtgactccttcactagccgacattaatacaagtttctggcagcgcagcatctcgctgtcatttttcttttgcattgtttgctgatttttttttaacgcaAGTAGCAAAAGcagagtatttagtgcgagttggagctactttgccttatggtgaatgcagtaagtgcctgtattatcatcaacaacgttacctgattagcacaaaagttcataacatacaacaACGTAAAAAAAACGAactcttacctatgaaatgttctgcctttgtgctttgttttctttgtttgctcattatttCACCCGTATACAGCGCTAAAGCCCCGCATCTGcatgtaataacactgtcttgactagtgcggttgaatgacgtttgtcctgggagcactgtaccaatgtggcggcgctattgacacatgctcagggtccctatgcataatctagtgtatatatctatggtaacTTGCAAgtcaaataattttctttttcttctttatcTCTCTTTATAATACAGCTTACTGTGTAGAATTCCATTGTGTGTGATATGTTTTGTGTTCTGCACTGATTCCCATATGACCCTGCTGTCATTTACACTGAAACAAACTCTATGGTTGTGTCCCAATTCTCATACTAATACTACTCCCTAAAATGATGTACTTGTTTGTGAATGAtaagtatatacttttgagtccaatagaagagtatgcaagctttgagACATACTACCTCATTACATCTTGatacatcatccacatttccttcatatttaattacctacTTTATTGGAGACATAGCAGTAGGATAATCTGCCATTagtgagtctttcatgcagagaaatctcctcaactctttggataattatgcattcagacggTAATGTCCAAACTCATATTGATGGAAGATTCATTGTTTTTGTAGATGAAATATAACAtggaaaacgtgatttaaaatatttcccagttGGCTGGATATTAATTAATAGTAattcaaacaactttaccgaagcctctctgcTTGACGGTTACTCTTGGGCGTTGTAGTTTATTTCACTTGCGTTTGTTCAAATTAAATTCACGTGCATGGTTAGAGTACGGACAGTTctcgtaagttttttttttaccggaAATAGTAGAGCATACGGGAACCTTGGGCATACTCATTTCAACATATTATATAATTCTATTTTCCAGTACTATTTAGGATGCAGCACATGTCCTGCTGCAAAGGTTTGCCTGACATCCCCAGGAAACCAGATTTCATTCATTCCGTGGAAAGCATAAAACCGCTGTTTGAATTATTTAATGCTTGATAATGCTTGATTattttagcaggtttggcatgctgtcccgggagagaaccccgagctcggagatagatgagtttaaggctcctgcctggtcaataagcattaggagggatacgagatcaggtagttcttgatAACTTCCCAAGAGTAGACCGTTAACTGCGCGACTTTGTACGTAGTaggtgcttgtgactttaacttttgttgcatgtttttttaatgtgggaGGAAACGTGGAGTACCTGGAGAAAACCGaagcgaacaaggggagaacatgcaaactacacagagCGTGTCGACTGGCTCAGCTAGTGTTTGAACCAACGACccccttgctgtggggcaacagtgctagccactgagccaccatgtcacccgaacttaaggctgatttatacttctgcgtcaaacactggCGTATGCTACGACGCTGACGCAAAGCCCTTCACCGTTGCCgttggcgtcactgacgtgcacctctcaaaaaatgtaagcgcaagctctgtgattggtcggcttggtagcgccaacgagtctgggcgggacagagagccgcgcaAATGGCGCGAGCCTGAtaaagcgattgtttacaagtgtggagtcccgtgaaggagctccggatggaaagttttgttttgtgtttacctcatagttaaagttgttgcacgtccgccggttcctgcctcaaaatgagcgagtttgagccacttgtacatcccggaagcgttcaggaaaagcaaaaaagcagcaaagaaactcgacacagaggaacatttacacctcactgccaactagcgtttcggaagtgttaatgcagaccaacagagacagcgcgcagaagtataaatgcacagccacgcgcgttgcatgcgccatgggttacgccggtcacctgacgcagaagtataaatcaggctttagaatTGAGGAGAAGGGATGGATTGGGGAGTGGGGGTCCAAACTGAAGATGAGAAAGGAAGTacaggctggatatttatattaaatttgtaatgaTCTGATTGGCTAGTTAGTCACTAGTGATAGGGATCAACTGTAGTCAGTCCTATcccatgctcctctcaaaattagttctTAAATTCACTTGTGCTATTCACCATATCAAAATAGTAATTATGTGAACAACACTATGCACCATGTTTCATTTAGAGAGGGGTCATGCCTATGCCCTAATCCAGAGGTgatcaatctcggtcctggagatttggtgtcctgcagggtttagctctaacttgcctcaacacacctgcctgggtgtttcaagtatacctagtaagaccttgattagcttgttcaggagtgtttgattaaggttggagctcaaatctgcagacAACGGttccctccaggaacaagtttgatgacccctgccCTAATCCCCTTGAAGGGTTATTCCATGAAGTGACAGCTTTGAAGGGATTAAGTTATTGGAAATGAAGATTGTGTCTGTACAGCTGAATGATTTCTGGTTAATAGTAATATTTTTGATATATTTCAATCAGGTTTTAGAGCTGGTGGTCATAGCACAGAGTCAACTCTATTGAGGGTTTCAAATAATGTCTTGTTGGCGGTTGATTCAGGTAGACCTGCTGTTTTTCTATTATTGGATCTCACTGCTGCTTTTGATACAGTCGATCATGACATTCTCATTGATCGACTTATGCCGAGTTCTCacagcatgattttcaaactagttgtgtcacggatgttttcacattgcatgactatctgggctagtgtttcgtcgctgctttgtttacactgcaagatggatcggcgacaggggctttcacattgcatgactttacaataggaagaatcaccgacTTCGTTCAAACTACATCTTAcaaccaaaaacacgtagtatcttttgttattaactacataacgagaaagaagcctttaattaGGGTAGAAAATTACATgattgctcacctgggtttgaaggaaaTCAGCAATTTCTTCTCAACTTTCTTCTTTAACTTTCTGTGTGAAACATCAAACAGACaagggtgctcctgtcaaacctccgatagtttttcctccatttcttgggtccaaataaaccgaaaatgagggCTTTTAACTTCTTccactggcctgcaggtacacacatgcaagtgaatgctgctctatCATTgactgtaggcgatcgctgatgttattctcagtcaaaactcattacatttgaatcgctgacagctccagatatttagcatgccaattATCTCACgggcatcggcgattctctcaggtCACGTCCTTggtagttcatactgtgtgattgtcactcacaagCACGAGCActaatttgcctgtgatttcaggcatttgtcggcgatttctcaaaacctgttggcaagtcaaaatcggggctaaaatgaTGCAGTCTGAACTAAAGAACCTGCTGGTATCCAGGGTCTAGCCCTGGACTGGTTCACTTCATATCTTAAGGATAGACATATGTCATTCAGTTTGGGCAGCTCTTGTTCTTGTGTCATTGAAATAATATCTGGGGTTCCGCAGGGCTCGGATTGGTTTTCCATTTACTTTCGTTGGGAAAAATTTTCAAAAAGCATAGCATAAGTTACCATCTCTATGCTGATGGCTCTCAAATCTACTTTCCCATCAAGTCTGGGGATCAATCCTCCCTTCAGGCTTTGGTAAATTGTTTGGCTGATGTGAAGGGTTGGTTAGCGAATAACTTTCTTCAACTGAACGAGGACAAGTGTTAATGAATTGATTTTAGCCAAAAAGGTTCAGATTCTAATGGCAATCTGAATAATGGCAGGCTCCATTTCAgttgcctcaaaatagcaacaaactTGTAACTTAACAGCATGAAACAGGATGTGAAATTGACATTAGTGCTAGGCTGAATTTAGCAAAAAACACTTACATCATGCCTGGTGCCATGCTGCGCCAGGTTTAGGATAGGGCCCTTAAGAGTTTAGAGGGCTTTAGAGATTCTAGACAGGTATTTGATTGGACAAAAACCATTCTGAGAAAACATTGATCTGAATGTTTCTCAACTTAGTTATTGTTTTTGATAACTTGACTTACATAATTACCTCCTTAATCCCAGAGCAGTTTATATCAAAGTTTATATTTAGTCGCACAATGTTGGTGTTTCTTAAtatctaatttttacgaggtgggtcgttagcccaacgctcGACCACTAACCTGGAGGATCAggacatacacaacggacaatttagcttgcccagttcacctatagagcatgtctttggacttgagaaatgggagcacccggaggaaaaccacgcaaacacagggtTTCCTCAGGGGAACTCTCAGAATGACTGTGTCATACAAGAACATTGTTGGGCATATGTGATAACCCAAAGTCCCAGATCTCATATTGGTGTCCACATCTAAATACATTTTGAAGTGATTTTATGCATATTGAAGCCATATAAAATGCATGTATGTTTCAAATAACATGCATCAAAGAGTcaaaatatggttgaaataacTTTTATCAGCATGACgacccattcacacggggcttcagcgtaaACGCTTGACTGAAGCCGTGTCTGAAATTGGGGCTGAAGTGATCGtcatggaagcgtcagccaatgaaattcagtcagcaataggccactgtctacctgatgtatttgcatacagcgatctgattggctgacgctttcatCGGCGCTTGGAAAAGttaagctagtcccaacttctgcagcgagcaacgtctCTGAAGTGGCGCTGATGGATCCAtaatgcagttcagcaacgcctgacgtcacccattcaaagtgaatgataagcgttgacgctgacaccCCTGTGAATGGGGCATAATACTACATAGAAAACAAAATGGATTGActatacttattaaaatatattaaagaaatgGGTGATATTACtgaatgtttattacattttaaatgaacatCTTGCTGATAACTTGGTAAAACCTAGTGGTTTAAAGGATAGCagcaaagtatgaaaatacaagaCTCTTCATTTGTACATGTGCCTGAATAAGCGTGTTCTggaagttgtgtttttttttaaaggagaataAAATGAAGCGGGACATTCTAATGTTTGAAA

Function

symbol description
tsen15 Predicted to enable nuclease activity and nucleic acid binding activity. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TSEN15 (tRNA splicing endonuclease subunit 15).

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0005575 cellular_component cellular_component
GO:0004518 nuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-041008-211 Predicted to enable nuclease activity and nucleic acid binding activity. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TSEN15 (tRNA splicing endonuclease subunit 15).

Ensembl:

ensembl_id ENSDARG00000069280

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030574 True 6943 mRNA 0.41 4 9946121 9957805
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Neighbor

gene id symbol gene type direction distance location
XLOC_015240 CR956623.1 coding upstream 4716 9918678 ~ 9941405 (+)
XLOC_015239 BX470264.2 coding upstream 70476 9875529 ~ 9875645 (+)
XLOC_015238 anxa13l coding upstream 103881 9821757 ~ 9842240 (+)
XLOC_015237 pcyt1aa coding upstream 166162 9755422 ~ 9779959 (+)
XLOC_015236 NA coding upstream 289074 9651716 ~ 9657047 (+)
XLOC_015242 sec22ba coding downstream 13137 9970942 ~ 9983661 (+)
XLOC_015243 slc35a3b coding downstream 32686 9990491 ~ 10040264 (+)
XLOC_015244 cmpk coding downstream 105942 10063747 ~ 10076929 (+)
XLOC_015245 insl5b coding downstream 169957 10127762 ~ 10129061 (+)
XLOC_015246 ahsg2 coding downstream 176540 10134345 ~ 10141741 (+)
XLOC_015231 NA non-coding upstream 615912 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding upstream 627842 9316319 ~ 9318279 (+)
XLOC_015227 NA non-coding upstream 1255092 8690658 ~ 8691029 (+)
XLOC_015249 FO704816.1 non-coding downstream 248196 10206001 ~ 10206118 (+)
XLOC_015251 NA non-coding downstream 326956 10284761 ~ 10285629 (+)
XLOC_015252 BX927121.1 non-coding downstream 428674 10386479 ~ 10416272 (+)
XLOC_015253 NA non-coding downstream 605694 10563499 ~ 10564386 (+)
XLOC_015254 NA non-coding downstream 646708 10604513 ~ 10607329 (+)

Expression

Expression of XLOC_015241(tsen15) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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Expression of XLOC_015241(tsen15) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network